RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 ROCK2O75116 1388 aaKnown RBP29.02■■■□□ 2.24
PNKP-211ENST00000598020 PRAM1Q96QH2 718 aa29.02■■■□□ 2.24
PNKP-211ENST00000598020 ARHGEF28Q8N1W1 1705 aaKnown RBP29.01■■■□□ 2.23
PNKP-211ENST00000598020 ATF3P18847 181 aa29■■■□□ 2.23
PNKP-211ENST00000598020 POGKQ9P215 609 aa28.99■■■□□ 2.23
PNKP-211ENST00000598020 SLAIN2Q9P270 581 aa28.96■■■□□ 2.23
PNKP-211ENST00000598020 CDC42BPGQ6DT37 1551 aa28.96■■■□□ 2.23
PNKP-211ENST00000598020 CARD11Q9BXL7 1154 aa28.92■■■□□ 2.22
PNKP-211ENST00000598020 MST1RQ04912 1400 aa28.92■■■□□ 2.22
PNKP-211ENST00000598020 ADGRB2O60241 1585 aa28.91■■■□□ 2.22
PNKP-211ENST00000598020 PIP4K2BP78356 416 aa28.9■■■□□ 2.22
PNKP-211ENST00000598020 SAFB2Q14151 953 aaKnown RBP eCLIP28.9■■■□□ 2.22
PNKP-211ENST00000598020 ILDR1Q86SU0 546 aaPredicted RBP28.89■■■□□ 2.22
PNKP-211ENST00000598020 CENPJQ9HC77 1338 aaPredicted RBP28.88■■■□□ 2.21
PNKP-211ENST00000598020 EIF3AQ14152 1382 aaKnown RBP28.88■■■□□ 2.21
PNKP-211ENST00000598020 MINK1Q8N4C8 1332 aaPredicted RBP28.85■■■□□ 2.21
PNKP-211ENST00000598020 SCAF1Q9H7N4 1312 aaKnown RBP28.85■■■□□ 2.21
PNKP-211ENST00000598020 C1orf167Q5SNV9 1468 aa28.85■■■□□ 2.21
PNKP-211ENST00000598020 FMN2Q9NZ56 1722 aa28.84■■■□□ 2.21
PNKP-211ENST00000598020 ROBO1Q9Y6N7 1651 aa28.83■■■□□ 2.21
PNKP-211ENST00000598020 QRICH2Q9H0J4 1663 aa28.8■■■□□ 2.2
PNKP-211ENST00000598020 WASLO00401 505 aaPredicted RBP28.8■■■□□ 2.2
PNKP-211ENST00000598020 HIRIP3Q9BW71 556 aaPredicted RBP28.8■■■□□ 2.2
PNKP-211ENST00000598020 BRINP3Q76B58 766 aa28.79■■■□□ 2.2
PNKP-211ENST00000598020 ANKARQ7Z5J8 1434 aa28.77■■■□□ 2.2
PNKP-211ENST00000598020 SBNO2Q9Y2G9 1366 aa28.77■■■□□ 2.2
PNKP-211ENST00000598020 TULP4Q9NRJ4 1543 aa28.74■■■□□ 2.19
PNKP-211ENST00000598020 ORAI2Q96SN7 254 aa28.73■■■□□ 2.19
PNKP-211ENST00000598020 HSPA1LP34931 641 aa28.72■■■□□ 2.19
PNKP-211ENST00000598020 CDK19Q9BWU1 502 aa28.72■■■□□ 2.19
PNKP-211ENST00000598020 USP47Q96K76 1375 aa28.72■■■□□ 2.19
PNKP-211ENST00000598020 USP32Q8NFA0 1604 aa28.72■■■□□ 2.19
PNKP-211ENST00000598020 NUTM2FA1L443 756 aa28.71■■■□□ 2.19
PNKP-211ENST00000598020 AHDC1Q5TGY3 1603 aaPredicted RBP28.71■■■□□ 2.19
PNKP-211ENST00000598020 ESCO1Q5FWF5 840 aa28.7■■■□□ 2.18
PNKP-211ENST00000598020 RGPD8O14715 1765 aaPredicted RBP28.7■■■□□ 2.18
PNKP-211ENST00000598020 PRR36Q9H6K5 1346 aa28.69■■■□□ 2.18
PNKP-211ENST00000598020 ST20-MTHFSA0A0A6YYL1 179 aa28.68■■■□□ 2.18
PNKP-211ENST00000598020 NHSL1Q5SYE7 1610 aa28.68■■■□□ 2.18
PNKP-211ENST00000598020 EVC2Q86UK5 1308 aa28.68■■■□□ 2.18
PNKP-211ENST00000598020 SLC24A1O60721 1099 aa28.67■■■□□ 2.18
PNKP-211ENST00000598020 ATP7BP35670 1465 aa28.66■■■□□ 2.18
PNKP-211ENST00000598020 TESK2Q96S53 571 aa28.66■■■□□ 2.18
PNKP-211ENST00000598020 KIF1AQ12756 1690 aa28.66■■■□□ 2.18
PNKP-211ENST00000598020 NUDT16Q96DE0 195 aaKnown RBP28.65■■■□□ 2.18
PNKP-211ENST00000598020 PHLPP1O60346 1717 aa28.64■■■□□ 2.18
PNKP-211ENST00000598020 PHF8Q9UPP1 1060 aa28.64■■■□□ 2.18
PNKP-211ENST00000598020 SRPK2P78362 688 aaKnown RBP28.62■■■□□ 2.17
PNKP-211ENST00000598020 ITSN1Q15811 1721 aa28.62■■■□□ 2.17
PNKP-211ENST00000598020 COL16A1Q07092 1604 aaPredicted RBP28.61■■■□□ 2.17
PNKP-211ENST00000598020 CCDC61Q9Y6R9 512 aa28.61■■■□□ 2.17
PNKP-211ENST00000598020 NPHP3Q7Z494 1330 aa28.61■■■□□ 2.17
PNKP-211ENST00000598020 CABP2Q9NPB3 220 aa28.6■■■□□ 2.17
PNKP-211ENST00000598020 TOPAZ1Q8N9V7 1692 aa28.6■■■□□ 2.17
PNKP-211ENST00000598020 PUS7Q96PZ0 661 aaKnown RBP28.59■■■□□ 2.17
PNKP-211ENST00000598020 SOS2Q07890 1332 aaPredicted RBP28.59■■■□□ 2.17
PNKP-211ENST00000598020 FOXO3O43524 673 aa28.58■■■□□ 2.17
PNKP-211ENST00000598020 EIF4G2P78344 907 aaKnown RBP eCLIP28.58■■■□□ 2.17
PNKP-211ENST00000598020 DDX17Q92841 729 aaKnown RBP28.57■■■□□ 2.16
PNKP-211ENST00000598020 PLEKHG3A1L390 1219 aa28.56■■■□□ 2.16
PNKP-211ENST00000598020 PXDNQ92626 1479 aa28.54■■■□□ 2.16
PNKP-211ENST00000598020 ATAD2Q6PL18 1390 aa28.54■■■□□ 2.16
PNKP-211ENST00000598020 PMFBP1Q8TBY8 1022 aa28.54■■■□□ 2.16
PNKP-211ENST00000598020 LRRC59Q96AG4 307 aaKnown RBP28.53■■■□□ 2.16
PNKP-211ENST00000598020 POLR3AO14802 1390 aaPredicted RBP28.52■■■□□ 2.16
PNKP-211ENST00000598020 PPIP5K1Q6PFW1 1433 aa28.52■■■□□ 2.16
PNKP-211ENST00000598020 HSPA5P11021 654 aaKnown RBP28.51■■■□□ 2.15
PNKP-211ENST00000598020 TMF1P82094 1093 aa28.51■■■□□ 2.15
PNKP-211ENST00000598020 JCADQ9P266 1359 aa28.5■■■□□ 2.15
PNKP-211ENST00000598020 KRT28Q7Z3Y7 464 aa28.49■■■□□ 2.15
PNKP-211ENST00000598020 NGDNQ8NEJ9 315 aaKnown RBP28.49■■■□□ 2.15
PNKP-211ENST00000598020 PSME1Q06323 249 aa28.48■■■□□ 2.15
PNKP-211ENST00000598020 DISP3Q9P2K9 1392 aa28.48■■■□□ 2.15
PNKP-211ENST00000598020 CABP1Q9NZU7 370 aa28.47■■■□□ 2.15
PNKP-211ENST00000598020 ACEP12821 1306 aa28.46■■■□□ 2.15
PNKP-211ENST00000598020 SBNO1A3KN83 1393 aa28.46■■■□□ 2.15
PNKP-211ENST00000598020 SHPRHQ149N8 1683 aa28.45■■■□□ 2.15
PNKP-211ENST00000598020 XPCQ01831 940 aaPredicted RBP28.45■■■□□ 2.14
PNKP-211ENST00000598020 CDCA8Q53HL2 280 aa28.45■■■□□ 2.14
PNKP-211ENST00000598020 ZEB1P37275 1124 aaPredicted RBP28.43■■■□□ 2.14
PNKP-211ENST00000598020 SPATA31A3Q5VYP0 1347 aa28.43■■■□□ 2.14
PNKP-211ENST00000598020 TRPM3Q9HCF6 1732 aaPredicted RBP28.42■■■□□ 2.14
PNKP-211ENST00000598020 PNPLA6Q8IY17 1366 aa28.41■■■□□ 2.14
PNKP-211ENST00000598020 NINLQ9Y2I6 1382 aa28.41■■■□□ 2.14
PNKP-211ENST00000598020 BRD4O60885 1362 aaPredicted RBP28.4■■■□□ 2.14
PNKP-211ENST00000598020 TNS3Q68CZ2 1445 aa28.39■■■□□ 2.14
PNKP-211ENST00000598020 ZNF692Q9BU19 519 aaPredicted RBP28.39■■■□□ 2.14
PNKP-211ENST00000598020 SPATA31A6Q5VVP1 1343 aa28.39■■■□□ 2.13
PNKP-211ENST00000598020 CPSF1Q10570 1443 aaKnown RBP28.38■■■□□ 2.13
PNKP-211ENST00000598020 COL22A1Q8NFW1 1626 aaPredicted RBP28.37■■■□□ 2.13
PNKP-211ENST00000598020 AKAP12Q02952 1782 aa28.36■■■□□ 2.13
PNKP-211ENST00000598020 TMC1Q8TDI8 760 aa28.35■■■□□ 2.13
PNKP-211ENST00000598020 SLC12A5Q9H2X9 1139 aa28.35■■■□□ 2.13
PNKP-211ENST00000598020 ARHGEF10O15013 1369 aa28.35■■■□□ 2.13
PNKP-211ENST00000598020 USP6P35125 1406 aa28.35■■■□□ 2.13
PNKP-211ENST00000598020 CD163L1Q9NR16 1453 aa28.34■■■□□ 2.13
PNKP-211ENST00000598020 ALS2Q96Q42 1657 aa28.34■■■□□ 2.13
PNKP-211ENST00000598020 SSH2Q76I76 1423 aa28.34■■■□□ 2.13
PNKP-211ENST00000598020 TERF2IPQ9NYB0 399 aa28.31■■■□□ 2.12
PNKP-211ENST00000598020 MON2Q7Z3U7 1717 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms