RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 NUTM2AQ8IVF1 878 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-211ENST00000597968 IFT172Q9UG01 1749 aa20.19■□□□□ 0.82
TRIM28-211ENST00000597968 NPHP3Q7Z494 1330 aa20.19■□□□□ 0.82
TRIM28-211ENST00000597968 ORAI2Q96SN7 254 aa20.18■□□□□ 0.82
TRIM28-211ENST00000597968 AFF2P51816 1311 aa20.18■□□□□ 0.82
TRIM28-211ENST00000597968 DDX17Q92841 729 aaKnown RBP20.16■□□□□ 0.82
TRIM28-211ENST00000597968 KNDC1Q76NI1 1749 aa20.16■□□□□ 0.82
TRIM28-211ENST00000597968 MYOM2P54296 1465 aa20.15■□□□□ 0.82
TRIM28-211ENST00000597968 NRXN1Q9ULB1 1477 aa20.15■□□□□ 0.82
TRIM28-211ENST00000597968 C14orf93Q9H972 538 aaKnown RBP20.14■□□□□ 0.81
TRIM28-211ENST00000597968 YTHDC2Q9H6S0 1430 aaKnown RBP20.13■□□□□ 0.81
TRIM28-211ENST00000597968 RBM6P78332 1123 aaKnown RBP20.13■□□□□ 0.81
TRIM28-211ENST00000597968 ESCO1Q5FWF5 840 aa20.13■□□□□ 0.81
TRIM28-211ENST00000597968 STAC3Q96MF2 364 aa20.13■□□□□ 0.81
TRIM28-211ENST00000597968 C8orf37Q96NL8 207 aa20.13■□□□□ 0.81
TRIM28-211ENST00000597968 HRCP23327 699 aa20.12■□□□□ 0.81
TRIM28-211ENST00000597968 COL22A1Q8NFW1 1626 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-211ENST00000597968 DHX57Q6P158 1386 aaKnown RBP20.1■□□□□ 0.81
TRIM28-211ENST00000597968 RAB3GAP2Q9H2M9 1393 aa20.1■□□□□ 0.81
TRIM28-211ENST00000597968 NGLY1Q96IV0 654 aa20.1■□□□□ 0.81
TRIM28-211ENST00000597968 QTRT2Q9H974 415 aaKnown RBP20.1■□□□□ 0.81
TRIM28-211ENST00000597968 STK26Q9P289 416 aa20.1■□□□□ 0.81
TRIM28-211ENST00000597968 TMEM132EQ6IEE7 984 aa20.09■□□□□ 0.81
TRIM28-211ENST00000597968 WAPLQ7Z5K2 1190 aa20.09■□□□□ 0.81
TRIM28-211ENST00000597968 FNBP4Q8N3X1 1017 aaPredicted RBP20.09■□□□□ 0.81
TRIM28-211ENST00000597968 UPF1Q92900 1129 aaKnown RBP eCLIP20.09■□□□□ 0.81
TRIM28-211ENST00000597968 PXDNQ92626 1479 aa20.09■□□□□ 0.81
TRIM28-211ENST00000597968 ADAMTS2O95450 1211 aa20.06■□□□□ 0.8
TRIM28-211ENST00000597968 TRPC5Q9UL62 973 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-211ENST00000597968 FOXO3O43524 673 aa20.05■□□□□ 0.8
TRIM28-211ENST00000597968 KIF1AQ12756 1690 aa20.05■□□□□ 0.8
TRIM28-211ENST00000597968 PLEKHH1Q9ULM0 1364 aa20.05■□□□□ 0.8
TRIM28-211ENST00000597968 DLC1Q96QB1 1528 aa20.04■□□□□ 0.8
TRIM28-211ENST00000597968 USP21Q9UK80 565 aa20.04■□□□□ 0.8
TRIM28-211ENST00000597968 FMN2Q9NZ56 1722 aa20.04■□□□□ 0.8
TRIM28-211ENST00000597968 CFAP70Q5T0N1 1121 aa20.02■□□□□ 0.8
TRIM28-211ENST00000597968 RGS12O14924 1447 aa20.02■□□□□ 0.79
TRIM28-211ENST00000597968 SPATA31A3Q5VYP0 1347 aa20.01■□□□□ 0.79
TRIM28-211ENST00000597968 PSME1Q06323 249 aa20■□□□□ 0.79
TRIM28-211ENST00000597968 ATRNO75882 1429 aa19.99■□□□□ 0.79
TRIM28-211ENST00000597968 ANKARQ7Z5J8 1434 aa19.99■□□□□ 0.79
TRIM28-211ENST00000597968 PRAM1Q96QH2 718 aa19.98■□□□□ 0.79
TRIM28-211ENST00000597968 PHF8Q9UPP1 1060 aa19.98■□□□□ 0.79
TRIM28-211ENST00000597968 EIF3AQ14152 1382 aaKnown RBP19.97■□□□□ 0.79
TRIM28-211ENST00000597968 NUTM2FA1L443 756 aa19.97■□□□□ 0.79
TRIM28-211ENST00000597968 KRT28Q7Z3Y7 464 aa19.97■□□□□ 0.79
TRIM28-211ENST00000597968 SBNO1A3KN83 1393 aa19.96■□□□□ 0.79
TRIM28-211ENST00000597968 ADGRB1O14514 1584 aa19.96■□□□□ 0.79
TRIM28-211ENST00000597968 POGKQ9P215 609 aa19.96■□□□□ 0.79
TRIM28-211ENST00000597968 ATAD2Q6PL18 1390 aa19.95■□□□□ 0.79
TRIM28-211ENST00000597968 ADGRB2O60241 1585 aa19.95■□□□□ 0.78
TRIM28-211ENST00000597968 BCL9LQ86UU0 1499 aa19.95■□□□□ 0.78
TRIM28-211ENST00000597968 TNS3Q68CZ2 1445 aa19.94■□□□□ 0.78
TRIM28-211ENST00000597968 MARF1Q9Y4F3 1742 aaKnown RBP19.94■□□□□ 0.78
TRIM28-211ENST00000597968 XPCQ01831 940 aaPredicted RBP19.94■□□□□ 0.78
TRIM28-211ENST00000597968 ARHGEF10O15013 1369 aa19.94■□□□□ 0.78
TRIM28-211ENST00000597968 DCAF11Q8TEB1 546 aa19.92■□□□□ 0.78
TRIM28-211ENST00000597968 SLIT2O94813 1529 aa19.92■□□□□ 0.78
TRIM28-211ENST00000597968 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.91■□□□□ 0.78
TRIM28-211ENST00000597968 UNC5CLQ8IV45 518 aa19.91■□□□□ 0.78
TRIM28-211ENST00000597968 GJD4Q96KN9 370 aaPredicted RBP19.91■□□□□ 0.78
TRIM28-211ENST00000597968 CCDC125Q86Z20 511 aa19.9■□□□□ 0.78
TRIM28-211ENST00000597968 USP32Q8NFA0 1604 aa19.88■□□□□ 0.77
TRIM28-211ENST00000597968 TRAK1Q9UPV9 953 aa19.88■□□□□ 0.77
TRIM28-211ENST00000597968 SAFB2Q14151 953 aaKnown RBP eCLIP19.87■□□□□ 0.77
TRIM28-211ENST00000597968 WASLO00401 505 aaPredicted RBP19.86■□□□□ 0.77
TRIM28-211ENST00000597968 HAP1P54257 671 aaPredicted RBP19.86■□□□□ 0.77
TRIM28-211ENST00000597968 KDM2AQ9Y2K7 1162 aa19.86■□□□□ 0.77
TRIM28-211ENST00000597968 TULP4Q9NRJ4 1543 aa19.86■□□□□ 0.77
TRIM28-211ENST00000597968 GPRASP1Q5JY77 1395 aa19.85■□□□□ 0.77
TRIM28-211ENST00000597968 EP400Q96L91 3159 aa19.84■□□□□ 0.77
TRIM28-211ENST00000597968 RGPD8O14715 1765 aaPredicted RBP19.84■□□□□ 0.77
TRIM28-211ENST00000597968 VPS72Q15906 364 aa19.82■□□□□ 0.76
TRIM28-211ENST00000597968 RALGAPBQ86X10 1494 aa19.81■□□□□ 0.76
TRIM28-211ENST00000597968 PMFBP1Q8TBY8 1022 aa19.81■□□□□ 0.76
TRIM28-211ENST00000597968 NWD2Q9ULI1 1742 aa19.81■□□□□ 0.76
TRIM28-211ENST00000597968 MINK1Q8N4C8 1332 aaPredicted RBP19.8■□□□□ 0.76
TRIM28-211ENST00000597968 ONECUT3O60422 494 aaPredicted RBP19.8■□□□□ 0.76
TRIM28-211ENST00000597968 LMOD2Q6P5Q4 547 aa19.79■□□□□ 0.76
TRIM28-211ENST00000597968 HIRIP3Q9BW71 556 aaPredicted RBP19.79■□□□□ 0.76
TRIM28-211ENST00000597968 KIAA1210Q9ULL0 1709 aa19.79■□□□□ 0.76
TRIM28-211ENST00000597968 PRR36Q9H6K5 1346 aa19.78■□□□□ 0.76
TRIM28-211ENST00000597968 GLI3P10071 1580 aa19.78■□□□□ 0.76
TRIM28-211ENST00000597968 TRPM3Q9HCF6 1732 aaPredicted RBP19.77■□□□□ 0.76
TRIM28-211ENST00000597968 NGDNQ8NEJ9 315 aaKnown RBP19.77■□□□□ 0.76
TRIM28-211ENST00000597968 CABLES1Q8TDN4 633 aa19.77■□□□□ 0.76
TRIM28-211ENST00000597968 ARHGEF28Q8N1W1 1705 aaKnown RBP19.76■□□□□ 0.75
TRIM28-211ENST00000597968 ABCA3Q99758 1704 aa19.76■□□□□ 0.75
TRIM28-211ENST00000597968 ALS2Q96Q42 1657 aa19.75■□□□□ 0.75
TRIM28-211ENST00000597968 ATP7BP35670 1465 aa19.74■□□□□ 0.75
TRIM28-211ENST00000597968 ITSN1Q15811 1721 aa19.74■□□□□ 0.75
TRIM28-211ENST00000597968 FAM83GA6ND36 823 aa19.74■□□□□ 0.75
TRIM28-211ENST00000597968 NUDT16Q96DE0 195 aaKnown RBP19.74■□□□□ 0.75
TRIM28-211ENST00000597968 BLMP54132 1417 aaPredicted RBP19.74■□□□□ 0.75
TRIM28-211ENST00000597968 PLCH1Q4KWH8 1693 aa19.73■□□□□ 0.75
TRIM28-211ENST00000597968 SEPT12Q8IYM1 358 aa19.72■□□□□ 0.75
TRIM28-211ENST00000597968 CCDC61Q9Y6R9 512 aa19.72■□□□□ 0.75
TRIM28-211ENST00000597968 POLR3AO14802 1390 aaPredicted RBP19.71■□□□□ 0.75
TRIM28-211ENST00000597968 COL14A1Q05707 1796 aaKnown RBP19.71■□□□□ 0.75
TRIM28-211ENST00000597968 ZRANB1Q9UGI0 708 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms