RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ARHGEF28Q8N1W1 1705 aaKnown RBP21■□□□□ 0.95
TRIM28-209ENST00000597423 CDK19Q9BWU1 502 aa20.99■□□□□ 0.95
TRIM28-209ENST00000597423 CPS1P31327 1500 aa20.99■□□□□ 0.95
TRIM28-209ENST00000597423 KNDC1Q76NI1 1749 aa20.98■□□□□ 0.95
TRIM28-209ENST00000597423 PLEKHH1Q9ULM0 1364 aa20.97■□□□□ 0.95
TRIM28-209ENST00000597423 QRICH2Q9H0J4 1663 aa20.97■□□□□ 0.95
TRIM28-209ENST00000597423 WASLO00401 505 aaPredicted RBP20.97■□□□□ 0.95
TRIM28-209ENST00000597423 ATAD2Q6PL18 1390 aa20.95■□□□□ 0.94
TRIM28-209ENST00000597423 ANP32CO43423 234 aa20.94■□□□□ 0.94
TRIM28-209ENST00000597423 TMC1Q8TDI8 760 aa20.94■□□□□ 0.94
TRIM28-209ENST00000597423 CABP2Q9NPB3 220 aa20.94■□□□□ 0.94
TRIM28-209ENST00000597423 AEBP2Q6ZN18 517 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-209ENST00000597423 PROSER2Q86WR7 435 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-209ENST00000597423 PANK3Q9H999 370 aa20.93■□□□□ 0.94
TRIM28-209ENST00000597423 NINLQ9Y2I6 1382 aa20.93■□□□□ 0.94
TRIM28-209ENST00000597423 C14orf37Q86TY3 774 aa20.9■□□□□ 0.94
TRIM28-209ENST00000597423 XRN1Q8IZH2 1706 aaKnown RBP20.9■□□□□ 0.94
TRIM28-209ENST00000597423 CHD2O14647 1828 aaKnown RBP20.89■□□□□ 0.93
TRIM28-209ENST00000597423 TERF2IPQ9NYB0 399 aa20.88■□□□□ 0.93
TRIM28-209ENST00000597423 KNSTRNQ9Y448 316 aa20.88■□□□□ 0.93
TRIM28-209ENST00000597423 TULP4Q9NRJ4 1543 aa20.88■□□□□ 0.93
TRIM28-209ENST00000597423 NUDT16Q96DE0 195 aaKnown RBP20.87■□□□□ 0.93
TRIM28-209ENST00000597423 CCDC61Q9Y6R9 512 aa20.87■□□□□ 0.93
TRIM28-209ENST00000597423 SLC12A5Q9H2X9 1139 aa20.86■□□□□ 0.93
TRIM28-209ENST00000597423 NKTRP30414 1462 aaKnown RBP20.86■□□□□ 0.93
TRIM28-209ENST00000597423 HDGFL2Q7Z4V5 671 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-209ENST00000597423 NCOA3Q9Y6Q9 1424 aa20.85■□□□□ 0.93
TRIM28-209ENST00000597423 STRCQ7RTU9 1775 aa20.85■□□□□ 0.93
TRIM28-209ENST00000597423 MIER1Q8N108 512 aa20.84■□□□□ 0.93
TRIM28-209ENST00000597423 NWD1Q149M9 1564 aa20.84■□□□□ 0.93
TRIM28-209ENST00000597423 C19orf44Q9H6X5 657 aa20.83■□□□□ 0.93
TRIM28-209ENST00000597423 CABP1Q9NZU7 370 aa20.83■□□□□ 0.93
TRIM28-209ENST00000597423 PER1O15534 1290 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-209ENST00000597423 ADGRB2O60241 1585 aa20.81■□□□□ 0.92
TRIM28-209ENST00000597423 ZNF692Q9BU19 519 aaPredicted RBP20.8■□□□□ 0.92
TRIM28-209ENST00000597423 ANKRD36BQ8N2N9 1353 aa20.8■□□□□ 0.92
TRIM28-209ENST00000597423 ADGRL3Q9HAR2 1447 aa20.79■□□□□ 0.92
TRIM28-209ENST00000597423 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-209ENST00000597423 KTN1Q86UP2 1357 aaKnown RBP20.79■□□□□ 0.92
TRIM28-209ENST00000597423 PLEKHG3A1L390 1219 aa20.78■□□□□ 0.92
TRIM28-209ENST00000597423 ATF3P18847 181 aa20.78■□□□□ 0.92
TRIM28-209ENST00000597423 RALBP1Q15311 655 aa20.78■□□□□ 0.92
TRIM28-209ENST00000597423 RBM33Q96EV2 1170 aaKnown RBP20.78■□□□□ 0.92
TRIM28-209ENST00000597423 TMEM94Q12767 1356 aa20.77■□□□□ 0.92
TRIM28-209ENST00000597423 ANKARQ7Z5J8 1434 aa20.77■□□□□ 0.91
TRIM28-209ENST00000597423 ZNF335Q9H4Z2 1342 aaPredicted RBP20.77■□□□□ 0.91
TRIM28-209ENST00000597423 CARD14Q9BXL6 1004 aa20.76■□□□□ 0.91
TRIM28-209ENST00000597423 PRKRIP1Q9H875 184 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-209ENST00000597423 PPIP5K1Q6PFW1 1433 aa20.76■□□□□ 0.91
TRIM28-209ENST00000597423 NUTM2FA1L443 756 aa20.75■□□□□ 0.91
TRIM28-209ENST00000597423 CADPS2Q86UW7 1296 aa20.75■□□□□ 0.91
TRIM28-209ENST00000597423 NPC1L1Q9UHC9 1359 aa20.74■□□□□ 0.91
TRIM28-209ENST00000597423 CCER2I3L3R5 266 aa20.74■□□□□ 0.91
TRIM28-209ENST00000597423 CGNL1Q0VF96 1302 aa20.74■□□□□ 0.91
TRIM28-209ENST00000597423 PRR36Q9H6K5 1346 aa20.74■□□□□ 0.91
TRIM28-209ENST00000597423 ATP7BP35670 1465 aa20.73■□□□□ 0.91
TRIM28-209ENST00000597423 MSH6P52701 1360 aa20.72■□□□□ 0.91
TRIM28-209ENST00000597423 AMER1Q5JTC6 1135 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-209ENST00000597423 NGDNQ8NEJ9 315 aaKnown RBP20.72■□□□□ 0.91
TRIM28-209ENST00000597423 CDC42BPGQ6DT37 1551 aa20.72■□□□□ 0.91
TRIM28-209ENST00000597423 CNGB1Q14028 1251 aaPredicted RBP20.71■□□□□ 0.91
TRIM28-209ENST00000597423 CC2D1BQ5T0F9 858 aaKnown RBP20.71■□□□□ 0.91
TRIM28-209ENST00000597423 MYOM1P52179 1685 aa20.7■□□□□ 0.9
TRIM28-209ENST00000597423 A0A1W2PP64 1363 aa20.7■□□□□ 0.9
TRIM28-209ENST00000597423 DCCP43146 1447 aa20.7■□□□□ 0.9
TRIM28-209ENST00000597423 NSD3Q9BZ95 1437 aa20.7■□□□□ 0.9
TRIM28-209ENST00000597423 ACEP12821 1306 aa20.69■□□□□ 0.9
TRIM28-209ENST00000597423 ESCO1Q5FWF5 840 aa20.68■□□□□ 0.9
TRIM28-209ENST00000597423 PHF8Q9UPP1 1060 aa20.68■□□□□ 0.9
TRIM28-209ENST00000597423 NSD2O96028 1365 aa20.67■□□□□ 0.9
TRIM28-209ENST00000597423 CPSF1Q10570 1443 aaKnown RBP20.67■□□□□ 0.9
TRIM28-209ENST00000597423 LRRC7Q96NW7 1537 aa20.67■□□□□ 0.9
TRIM28-209ENST00000597423 PMFBP1Q8TBY8 1022 aa20.66■□□□□ 0.9
TRIM28-209ENST00000597423 MORC1Q86VD1 984 aa20.65■□□□□ 0.9
TRIM28-209ENST00000597423 CD163L1Q9NR16 1453 aa20.64■□□□□ 0.89
TRIM28-209ENST00000597423 EDC4Q6P2E9 1401 aaKnown RBP20.64■□□□□ 0.89
TRIM28-209ENST00000597423 MYBBP1AQ9BQG0 1328 aaKnown RBP20.64■□□□□ 0.89
TRIM28-209ENST00000597423 NALCNQ8IZF0 1738 aa20.64■□□□□ 0.89
TRIM28-209ENST00000597423 POLR3AO14802 1390 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-209ENST00000597423 PARD3Q8TEW0 1356 aa20.63■□□□□ 0.89
TRIM28-209ENST00000597423 PSME1Q06323 249 aa20.63■□□□□ 0.89
TRIM28-209ENST00000597423 STRCP1A6NGW2 1772 aa20.63■□□□□ 0.89
TRIM28-209ENST00000597423 FMN2Q9NZ56 1722 aa20.63■□□□□ 0.89
TRIM28-209ENST00000597423 BRD4O60885 1362 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-209ENST00000597423 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.62■□□□□ 0.89
TRIM28-209ENST00000597423 FYB1O15117 783 aa20.61■□□□□ 0.89
TRIM28-209ENST00000597423 NLRP13Q86W25 1043 aa20.61■□□□□ 0.89
TRIM28-209ENST00000597423 TTC21AQ8NDW8 1320 aa20.6■□□□□ 0.89
TRIM28-209ENST00000597423 ITSN1Q15811 1721 aa20.6■□□□□ 0.89
TRIM28-209ENST00000597423 C1orf167Q5SNV9 1468 aa20.6■□□□□ 0.89
TRIM28-209ENST00000597423 TTC21BQ7Z4L5 1316 aa20.59■□□□□ 0.89
TRIM28-209ENST00000597423 SLAIN2Q9P270 581 aa20.59■□□□□ 0.89
TRIM28-209ENST00000597423 ORAI2Q96SN7 254 aa20.58■□□□□ 0.89
TRIM28-209ENST00000597423 USP32Q8NFA0 1604 aa20.57■□□□□ 0.88
TRIM28-209ENST00000597423 USP6P35125 1406 aa20.57■□□□□ 0.88
TRIM28-209ENST00000597423 COG3Q96JB2 828 aa20.57■□□□□ 0.88
TRIM28-209ENST00000597423 MRS2Q9HD23 443 aa20.57■□□□□ 0.88
TRIM28-209ENST00000597423 TOPAZ1Q8N9V7 1692 aa20.57■□□□□ 0.88
TRIM28-209ENST00000597423 MST1RQ04912 1400 aa20.56■□□□□ 0.88
TRIM28-209ENST00000597423 GGNBP2Q9H3C7 697 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms