RNA–Protein interactions for RNA: ENST00000596624.1

PNKP-208, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-208ENST00000596624 COL22A1Q8NFW1 1626 aaPredicted RBP15.9■□□□□ 0.14
PNKP-208ENST00000596624 MPHOSPH9Q99550 1183 aa15.9■□□□□ 0.14
PNKP-208ENST00000596624 LRPPRCP42704 1394 aaKnown RBP15.89■□□□□ 0.13
PNKP-208ENST00000596624 RBM6P78332 1123 aaKnown RBP15.89■□□□□ 0.13
PNKP-208ENST00000596624 FOXD1Q16676 465 aa15.89■□□□□ 0.13
PNKP-208ENST00000596624 KNDC1Q76NI1 1749 aa15.88■□□□□ 0.13
PNKP-208ENST00000596624 PIK3C2GO75747 1445 aa15.88■□□□□ 0.13
PNKP-208ENST00000596624 FNBP4Q8N3X1 1017 aaPredicted RBP15.88■□□□□ 0.13
PNKP-208ENST00000596624 SIRT1Q96EB6 747 aa15.88■□□□□ 0.13
PNKP-208ENST00000596624 MYOM2P54296 1465 aa15.87■□□□□ 0.13
PNKP-208ENST00000596624 PXDNQ92626 1479 aa15.87■□□□□ 0.13
PNKP-208ENST00000596624 QTRT2Q9H974 415 aaKnown RBP15.87■□□□□ 0.13
PNKP-208ENST00000596624 NRXN1Q9ULB1 1477 aa15.86■□□□□ 0.13
PNKP-208ENST00000596624 C8orf37Q96NL8 207 aa15.86■□□□□ 0.13
PNKP-208ENST00000596624 NPHP3Q7Z494 1330 aa15.86■□□□□ 0.13
PNKP-208ENST00000596624 RGS12O14924 1447 aa15.85■□□□□ 0.13
PNKP-208ENST00000596624 NGLY1Q96IV0 654 aa15.83■□□□□ 0.12
PNKP-208ENST00000596624 C14orf93Q9H972 538 aaKnown RBP15.83■□□□□ 0.12
PNKP-208ENST00000596624 RGL3Q3MIN7 710 aa15.82■□□□□ 0.12
PNKP-208ENST00000596624 WAPLQ7Z5K2 1190 aa15.82■□□□□ 0.12
PNKP-208ENST00000596624 ATRNO75882 1429 aa15.82■□□□□ 0.12
PNKP-208ENST00000596624 YTHDC2Q9H6S0 1430 aaKnown RBP15.82■□□□□ 0.12
PNKP-208ENST00000596624 ESCO1Q5FWF5 840 aa15.81■□□□□ 0.12
PNKP-208ENST00000596624 FMN2Q9NZ56 1722 aa15.81■□□□□ 0.12
PNKP-208ENST00000596624 PLEKHH1Q9ULM0 1364 aa15.81■□□□□ 0.12
PNKP-208ENST00000596624 ADAMTS2O95450 1211 aa15.8■□□□□ 0.12
PNKP-208ENST00000596624 TRPC5Q9UL62 973 aaPredicted RBP15.8■□□□□ 0.12
PNKP-208ENST00000596624 BCL9LQ86UU0 1499 aa15.79■□□□□ 0.12
PNKP-208ENST00000596624 FOXO3O43524 673 aa15.79■□□□□ 0.12
PNKP-208ENST00000596624 TMEM132EQ6IEE7 984 aa15.79■□□□□ 0.12
PNKP-208ENST00000596624 USP21Q9UK80 565 aa15.79■□□□□ 0.12
PNKP-208ENST00000596624 MARF1Q9Y4F3 1742 aaKnown RBP15.79■□□□□ 0.12
PNKP-208ENST00000596624 STK26Q9P289 416 aa15.78■□□□□ 0.12
PNKP-208ENST00000596624 KIF1AQ12756 1690 aa15.77■□□□□ 0.12
PNKP-208ENST00000596624 SPATA31A3Q5VYP0 1347 aa15.76■□□□□ 0.11
PNKP-208ENST00000596624 DLC1Q96QB1 1528 aa15.75■□□□□ 0.11
PNKP-208ENST00000596624 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.75■□□□□ 0.11
PNKP-208ENST00000596624 DHX57Q6P158 1386 aaKnown RBP15.75■□□□□ 0.11
PNKP-208ENST00000596624 SLIT2O94813 1529 aa15.74■□□□□ 0.11
PNKP-208ENST00000596624 ATAD2Q6PL18 1390 aa15.74■□□□□ 0.11
PNKP-208ENST00000596624 CFAP70Q5T0N1 1121 aa15.73■□□□□ 0.11
PNKP-208ENST00000596624 ADGRB1O14514 1584 aa15.72■□□□□ 0.11
PNKP-208ENST00000596624 XPCQ01831 940 aaPredicted RBP15.72■□□□□ 0.11
PNKP-208ENST00000596624 RGPD8O14715 1765 aaPredicted RBP15.72■□□□□ 0.11
PNKP-208ENST00000596624 ADGRB2O60241 1585 aa15.71■□□□□ 0.11
PNKP-208ENST00000596624 HRCP23327 699 aa15.71■□□□□ 0.11
PNKP-208ENST00000596624 KRT28Q7Z3Y7 464 aa15.71■□□□□ 0.11
PNKP-208ENST00000596624 GJD4Q96KN9 370 aaPredicted RBP15.71■□□□□ 0.11
PNKP-208ENST00000596624 STAC3Q96MF2 364 aa15.71■□□□□ 0.11
PNKP-208ENST00000596624 EP400Q96L91 3159 aa15.71■□□□□ 0.11
PNKP-208ENST00000596624 SBNO1A3KN83 1393 aa15.71■□□□□ 0.11
PNKP-208ENST00000596624 RAB3GAP2Q9H2M9 1393 aa15.71■□□□□ 0.11
PNKP-208ENST00000596624 ANKARQ7Z5J8 1434 aa15.7■□□□□ 0.1
PNKP-208ENST00000596624 NUTM2FA1L443 756 aa15.7■□□□□ 0.1
PNKP-208ENST00000596624 PHF8Q9UPP1 1060 aa15.7■□□□□ 0.1
PNKP-208ENST00000596624 USP32Q8NFA0 1604 aa15.69■□□□□ 0.1
PNKP-208ENST00000596624 UNC5CLQ8IV45 518 aa15.69■□□□□ 0.1
PNKP-208ENST00000596624 TNS3Q68CZ2 1445 aa15.68■□□□□ 0.1
PNKP-208ENST00000596624 CCDC125Q86Z20 511 aa15.68■□□□□ 0.1
PNKP-208ENST00000596624 PRAM1Q96QH2 718 aa15.68■□□□□ 0.1
PNKP-208ENST00000596624 GLI3P10071 1580 aa15.67■□□□□ 0.1
PNKP-208ENST00000596624 PSME1Q06323 249 aa15.67■□□□□ 0.1
PNKP-208ENST00000596624 ONECUT3O60422 494 aaPredicted RBP15.66■□□□□ 0.1
PNKP-208ENST00000596624 RALGAPBQ86X10 1494 aa15.65■□□□□ 0.1
PNKP-208ENST00000596624 ARHGEF10O15013 1369 aa15.65■□□□□ 0.1
PNKP-208ENST00000596624 NWD2Q9ULI1 1742 aa15.65■□□□□ 0.1
PNKP-208ENST00000596624 ABCA3Q99758 1704 aa15.64■□□□□ 0.09
PNKP-208ENST00000596624 TRPM3Q9HCF6 1732 aaPredicted RBP15.63■□□□□ 0.09
PNKP-208ENST00000596624 SRCAPQ6ZRS2 3230 aa15.63■□□□□ 0.09
PNKP-208ENST00000596624 VPS72Q15906 364 aa15.63■□□□□ 0.09
PNKP-208ENST00000596624 EIF3AQ14152 1382 aaKnown RBP15.62■□□□□ 0.09
PNKP-208ENST00000596624 ALS2Q96Q42 1657 aa15.61■□□□□ 0.09
PNKP-208ENST00000596624 POGKQ9P215 609 aa15.61■□□□□ 0.09
PNKP-208ENST00000596624 TULP4Q9NRJ4 1543 aa15.61■□□□□ 0.09
PNKP-208ENST00000596624 PRR36Q9H6K5 1346 aa15.61■□□□□ 0.09
PNKP-208ENST00000596624 PLCH1Q4KWH8 1693 aa15.6■□□□□ 0.09
PNKP-208ENST00000596624 BRWD3Q6RI45 1802 aa15.59■□□□□ 0.09
PNKP-208ENST00000596624 FAM83GA6ND36 823 aa15.59■□□□□ 0.09
PNKP-208ENST00000596624 WASLO00401 505 aaPredicted RBP15.59■□□□□ 0.09
PNKP-208ENST00000596624 SAFB2Q14151 953 aaKnown RBP eCLIP15.59■□□□□ 0.09
PNKP-208ENST00000596624 CABLES1Q8TDN4 633 aa15.59■□□□□ 0.09
PNKP-208ENST00000596624 BLMP54132 1417 aaPredicted RBP15.59■□□□□ 0.09
PNKP-208ENST00000596624 PMFBP1Q8TBY8 1022 aa15.58■□□□□ 0.08
PNKP-208ENST00000596624 DCAF11Q8TEB1 546 aa15.58■□□□□ 0.08
PNKP-208ENST00000596624 TRAK1Q9UPV9 953 aa15.58■□□□□ 0.08
PNKP-208ENST00000596624 NRAPQ86VF7 1730 aa15.57■□□□□ 0.08
PNKP-208ENST00000596624 CRYBG1Q9Y4K1 1723 aa15.57■□□□□ 0.08
PNKP-208ENST00000596624 SEPT12Q8IYM1 358 aa15.56■□□□□ 0.08
PNKP-208ENST00000596624 ARHGEF28Q8N1W1 1705 aaKnown RBP15.56■□□□□ 0.08
PNKP-208ENST00000596624 GPRASP1Q5JY77 1395 aa15.55■□□□□ 0.08
PNKP-208ENST00000596624 ATP7BP35670 1465 aa15.54■□□□□ 0.08
PNKP-208ENST00000596624 MINK1Q8N4C8 1332 aaPredicted RBP15.54■□□□□ 0.08
PNKP-208ENST00000596624 HIRIP3Q9BW71 556 aaPredicted RBP15.54■□□□□ 0.08
PNKP-208ENST00000596624 ZRANB1Q9UGI0 708 aa15.54■□□□□ 0.08
PNKP-208ENST00000596624 KDM2AQ9Y2K7 1162 aa15.54■□□□□ 0.08
PNKP-208ENST00000596624 COL14A1Q05707 1796 aaKnown RBP15.54■□□□□ 0.08
PNKP-208ENST00000596624 KIAA1210Q9ULL0 1709 aa15.54■□□□□ 0.08
PNKP-208ENST00000596624 HAP1P54257 671 aaPredicted RBP15.53■□□□□ 0.08
PNKP-208ENST00000596624 POLR3AO14802 1390 aaPredicted RBP15.51■□□□□ 0.07
PNKP-208ENST00000596624 LMOD2Q6P5Q4 547 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms