RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 KNDC1Q76NI1 1749 aa23.76■■□□□ 1.39
USHBP1-206ENST00000596436 MYOM2P54296 1465 aa23.75■■□□□ 1.39
USHBP1-206ENST00000596436 PXDNQ92626 1479 aa23.75■■□□□ 1.39
USHBP1-206ENST00000596436 ADAMTS2O95450 1211 aa23.73■■□□□ 1.39
USHBP1-206ENST00000596436 FNBP4Q8N3X1 1017 aaPredicted RBP23.73■■□□□ 1.39
USHBP1-206ENST00000596436 NGLY1Q96IV0 654 aa23.73■■□□□ 1.39
USHBP1-206ENST00000596436 ADGRF5Q8IZF2 1346 aa23.73■■□□□ 1.39
USHBP1-206ENST00000596436 CCDC144AA2RUR9 1427 aa23.73■■□□□ 1.39
USHBP1-206ENST00000596436 MARF1Q9Y4F3 1742 aaKnown RBP23.71■■□□□ 1.39
USHBP1-206ENST00000596436 LRPPRCP42704 1394 aaKnown RBP23.71■■□□□ 1.39
USHBP1-206ENST00000596436 ANKRD30BQ9BXX2 1392 aa23.71■■□□□ 1.39
USHBP1-206ENST00000596436 NPHP3Q7Z494 1330 aa23.71■■□□□ 1.39
USHBP1-206ENST00000596436 FOXD1Q16676 465 aa23.71■■□□□ 1.39
USHBP1-206ENST00000596436 PIK3C2GO75747 1445 aa23.7■■□□□ 1.38
USHBP1-206ENST00000596436 ATRNO75882 1429 aa23.7■■□□□ 1.38
USHBP1-206ENST00000596436 ABCC11Q96J66 1382 aa23.7■■□□□ 1.38
USHBP1-206ENST00000596436 RAB3GAP2Q9H2M9 1393 aa23.68■■□□□ 1.38
USHBP1-206ENST00000596436 USP21Q9UK80 565 aa23.68■■□□□ 1.38
USHBP1-206ENST00000596436 FMN2Q9NZ56 1722 aa23.67■■□□□ 1.38
USHBP1-206ENST00000596436 EP400Q96L91 3159 aa23.67■■□□□ 1.38
USHBP1-206ENST00000596436 ESCO1Q5FWF5 840 aa23.66■■□□□ 1.38
USHBP1-206ENST00000596436 TRPC5Q9UL62 973 aaPredicted RBP23.66■■□□□ 1.38
USHBP1-206ENST00000596436 BCL9LQ86UU0 1499 aa23.66■■□□□ 1.38
USHBP1-206ENST00000596436 MPHOSPH9Q99550 1183 aa23.64■■□□□ 1.37
USHBP1-206ENST00000596436 ATAD2Q6PL18 1390 aa23.64■■□□□ 1.37
USHBP1-206ENST00000596436 PLEKHH1Q9ULM0 1364 aa23.64■■□□□ 1.37
USHBP1-206ENST00000596436 KIF1AQ12756 1690 aa23.64■■□□□ 1.37
USHBP1-206ENST00000596436 WAPLQ7Z5K2 1190 aa23.63■■□□□ 1.37
USHBP1-206ENST00000596436 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.63■■□□□ 1.37
USHBP1-206ENST00000596436 NRXN1Q9ULB1 1477 aa23.62■■□□□ 1.37
USHBP1-206ENST00000596436 YTHDC2Q9H6S0 1430 aaKnown RBP23.62■■□□□ 1.37
USHBP1-206ENST00000596436 FOXO3O43524 673 aa23.62■■□□□ 1.37
USHBP1-206ENST00000596436 RGL3Q3MIN7 710 aa23.62■■□□□ 1.37
USHBP1-206ENST00000596436 SRCAPQ6ZRS2 3230 aa23.61■■□□□ 1.37
USHBP1-206ENST00000596436 SIRT1Q96EB6 747 aa23.6■■□□□ 1.37
USHBP1-206ENST00000596436 STK26Q9P289 416 aa23.6■■□□□ 1.37
USHBP1-206ENST00000596436 TMEM132EQ6IEE7 984 aa23.59■■□□□ 1.37
USHBP1-206ENST00000596436 XPCQ01831 940 aaPredicted RBP23.57■■□□□ 1.36
USHBP1-206ENST00000596436 SLIT2O94813 1529 aa23.56■■□□□ 1.36
USHBP1-206ENST00000596436 SPATA31A3Q5VYP0 1347 aa23.56■■□□□ 1.36
USHBP1-206ENST00000596436 C14orf93Q9H972 538 aaKnown RBP23.55■■□□□ 1.36
USHBP1-206ENST00000596436 ACIN1Q9UKV3 1341 aaKnown RBP23.55■■□□□ 1.36
USHBP1-206ENST00000596436 USP32Q8NFA0 1604 aa23.55■■□□□ 1.36
USHBP1-206ENST00000596436 RGPD8O14715 1765 aaPredicted RBP23.53■■□□□ 1.36
USHBP1-206ENST00000596436 NUTM2FA1L443 756 aa23.53■■□□□ 1.36
USHBP1-206ENST00000596436 GLI3P10071 1580 aa23.52■■□□□ 1.36
USHBP1-206ENST00000596436 GJD4Q96KN9 370 aaPredicted RBP23.52■■□□□ 1.36
USHBP1-206ENST00000596436 DLC1Q96QB1 1528 aa23.5■■□□□ 1.35
USHBP1-206ENST00000596436 HRCP23327 699 aa23.49■■□□□ 1.35
USHBP1-206ENST00000596436 ABCA3Q99758 1704 aa23.49■■□□□ 1.35
USHBP1-206ENST00000596436 TNS3Q68CZ2 1445 aa23.49■■□□□ 1.35
USHBP1-206ENST00000596436 RALGAPBQ86X10 1494 aa23.49■■□□□ 1.35
USHBP1-206ENST00000596436 KRT28Q7Z3Y7 464 aa23.48■■□□□ 1.35
USHBP1-206ENST00000596436 DHX57Q6P158 1386 aaKnown RBP23.48■■□□□ 1.35
USHBP1-206ENST00000596436 ADGRB2O60241 1585 aa23.48■■□□□ 1.35
USHBP1-206ENST00000596436 CCDC125Q86Z20 511 aa23.47■■□□□ 1.35
USHBP1-206ENST00000596436 UNC5CLQ8IV45 518 aa23.47■■□□□ 1.35
USHBP1-206ENST00000596436 SBNO1A3KN83 1393 aa23.46■■□□□ 1.35
USHBP1-206ENST00000596436 ADGRB1O14514 1584 aa23.46■■□□□ 1.35
USHBP1-206ENST00000596436 CFAP70Q5T0N1 1121 aa23.46■■□□□ 1.35
USHBP1-206ENST00000596436 NWD2Q9ULI1 1742 aa23.46■■□□□ 1.35
USHBP1-206ENST00000596436 PHF8Q9UPP1 1060 aa23.46■■□□□ 1.35
USHBP1-206ENST00000596436 PLCH1Q4KWH8 1693 aa23.44■■□□□ 1.34
USHBP1-206ENST00000596436 ANKARQ7Z5J8 1434 aa23.44■■□□□ 1.34
USHBP1-206ENST00000596436 TRIM26Q12899 539 aaPredicted RBP23.43■■□□□ 1.34
USHBP1-206ENST00000596436 BRWD3Q6RI45 1802 aa23.43■■□□□ 1.34
USHBP1-206ENST00000596436 PRAM1Q96QH2 718 aa23.41■■□□□ 1.34
USHBP1-206ENST00000596436 TRPM3Q9HCF6 1732 aaPredicted RBP23.41■■□□□ 1.34
USHBP1-206ENST00000596436 PSME1Q06323 249 aa23.4■■□□□ 1.34
USHBP1-206ENST00000596436 ARHGEF10O15013 1369 aa23.4■■□□□ 1.34
USHBP1-206ENST00000596436 BLMP54132 1417 aaPredicted RBP23.38■■□□□ 1.33
USHBP1-206ENST00000596436 ONECUT3O60422 494 aaPredicted RBP23.37■■□□□ 1.33
USHBP1-206ENST00000596436 VPS72Q15906 364 aa23.37■■□□□ 1.33
USHBP1-206ENST00000596436 ZRANB1Q9UGI0 708 aa23.37■■□□□ 1.33
USHBP1-206ENST00000596436 ALS2Q96Q42 1657 aa23.37■■□□□ 1.33
USHBP1-206ENST00000596436 CABLES1Q8TDN4 633 aa23.36■■□□□ 1.33
USHBP1-206ENST00000596436 NRAPQ86VF7 1730 aa23.36■■□□□ 1.33
USHBP1-206ENST00000596436 TULP4Q9NRJ4 1543 aa23.33■■□□□ 1.33
USHBP1-206ENST00000596436 SAFB2Q14151 953 aaKnown RBP eCLIP23.33■■□□□ 1.33
USHBP1-206ENST00000596436 CRYBG1Q9Y4K1 1723 aa23.33■■□□□ 1.32
USHBP1-206ENST00000596436 SEPT12Q8IYM1 358 aa23.31■■□□□ 1.32
USHBP1-206ENST00000596436 POGKQ9P215 609 aa23.31■■□□□ 1.32
USHBP1-206ENST00000596436 PRR36Q9H6K5 1346 aa23.31■■□□□ 1.32
USHBP1-206ENST00000596436 EIF3AQ14152 1382 aaKnown RBP23.3■■□□□ 1.32
USHBP1-206ENST00000596436 HAP1P54257 671 aaPredicted RBP23.3■■□□□ 1.32
USHBP1-206ENST00000596436 FAM83GA6ND36 823 aa23.29■■□□□ 1.32
USHBP1-206ENST00000596436 PMFBP1Q8TBY8 1022 aa23.29■■□□□ 1.32
USHBP1-206ENST00000596436 COL14A1Q05707 1796 aaKnown RBP23.29■■□□□ 1.32
USHBP1-206ENST00000596436 STAC3Q96MF2 364 aa23.28■■□□□ 1.32
USHBP1-206ENST00000596436 TRAK1Q9UPV9 953 aa23.27■■□□□ 1.32
USHBP1-206ENST00000596436 ARHGEF28Q8N1W1 1705 aaKnown RBP23.26■■□□□ 1.31
USHBP1-206ENST00000596436 LMOD2Q6P5Q4 547 aa23.25■■□□□ 1.31
USHBP1-206ENST00000596436 GPRASP1Q5JY77 1395 aa23.25■■□□□ 1.31
USHBP1-206ENST00000596436 WASLO00401 505 aaPredicted RBP23.24■■□□□ 1.31
USHBP1-206ENST00000596436 HIRIP3Q9BW71 556 aaPredicted RBP23.24■■□□□ 1.31
USHBP1-206ENST00000596436 ITSN1Q15811 1721 aa23.23■■□□□ 1.31
USHBP1-206ENST00000596436 KRT27Q7Z3Y8 459 aa23.23■■□□□ 1.31
USHBP1-206ENST00000596436 DEFB132Q7Z7B7 95 aa23.23■■□□□ 1.31
USHBP1-206ENST00000596436 MINK1Q8N4C8 1332 aaPredicted RBP23.23■■□□□ 1.31
USHBP1-206ENST00000596436 ATP7BP35670 1465 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms