RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 NPHP4O75161 1426 aaPredicted RBP20.87■□□□□ 0.93
VRK3-207ENST00000594092 AMOTL2Q9Y2J4 779 aa20.86■□□□□ 0.93
VRK3-207ENST00000594092 PIK3R4Q99570 1358 aa20.86■□□□□ 0.93
VRK3-207ENST00000594092 PER1O15534 1290 aaPredicted RBP20.85■□□□□ 0.93
VRK3-207ENST00000594092 NCKAP5LQ9HCH0 1330 aa20.85■□□□□ 0.93
VRK3-207ENST00000594092 PRKRIP1Q9H875 184 aaPredicted RBP20.84■□□□□ 0.93
VRK3-207ENST00000594092 XRN1Q8IZH2 1706 aaKnown RBP20.84■□□□□ 0.93
VRK3-207ENST00000594092 CABP2Q9NPB3 220 aa20.83■□□□□ 0.93
VRK3-207ENST00000594092 PTCH1Q13635 1447 aa20.83■□□□□ 0.92
VRK3-207ENST00000594092 SRPK2P78362 688 aaKnown RBP20.81■□□□□ 0.92
VRK3-207ENST00000594092 CCER2I3L3R5 266 aa20.81■□□□□ 0.92
VRK3-207ENST00000594092 CDK19Q9BWU1 502 aa20.81■□□□□ 0.92
VRK3-207ENST00000594092 LMTK3Q96Q04 1460 aa20.8■□□□□ 0.92
VRK3-207ENST00000594092 HSPA2P54652 639 aa20.79■□□□□ 0.92
VRK3-207ENST00000594092 CHD2O14647 1828 aaKnown RBP20.79■□□□□ 0.92
VRK3-207ENST00000594092 TMC1Q8TDI8 760 aa20.78■□□□□ 0.92
VRK3-207ENST00000594092 ATAD2Q6PL18 1390 aa20.78■□□□□ 0.92
VRK3-207ENST00000594092 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.78■□□□□ 0.92
VRK3-207ENST00000594092 KCNA6P17658 529 aa20.78■□□□□ 0.92
VRK3-207ENST00000594092 SLC12A5Q9H2X9 1139 aa20.78■□□□□ 0.92
VRK3-207ENST00000594092 WASLO00401 505 aaPredicted RBP20.77■□□□□ 0.92
VRK3-207ENST00000594092 CNGB1Q14028 1251 aaPredicted RBP20.77■□□□□ 0.92
VRK3-207ENST00000594092 ADGRB2O60241 1585 aa20.76■□□□□ 0.91
VRK3-207ENST00000594092 NINLQ9Y2I6 1382 aa20.75■□□□□ 0.91
VRK3-207ENST00000594092 YTHDC1Q96MU7 727 aaKnown RBP20.75■□□□□ 0.91
VRK3-207ENST00000594092 KNSTRNQ9Y448 316 aa20.75■□□□□ 0.91
VRK3-207ENST00000594092 CARD14Q9BXL6 1004 aa20.74■□□□□ 0.91
VRK3-207ENST00000594092 KTN1Q86UP2 1357 aaKnown RBP20.73■□□□□ 0.91
VRK3-207ENST00000594092 ANKRD36BQ8N2N9 1353 aa20.72■□□□□ 0.91
VRK3-207ENST00000594092 AMER1Q5JTC6 1135 aaPredicted RBP20.71■□□□□ 0.91
VRK3-207ENST00000594092 RALBP1Q15311 655 aa20.71■□□□□ 0.91
VRK3-207ENST00000594092 PARD3Q8TEW0 1356 aa20.7■□□□□ 0.9
VRK3-207ENST00000594092 CENPBP07199 599 aaPredicted RBP20.7■□□□□ 0.9
VRK3-207ENST00000594092 CC2D1BQ5T0F9 858 aaKnown RBP20.7■□□□□ 0.9
VRK3-207ENST00000594092 NWD1Q149M9 1564 aa20.69■□□□□ 0.9
VRK3-207ENST00000594092 NPC1L1Q9UHC9 1359 aa20.69■□□□□ 0.9
VRK3-207ENST00000594092 NUDT16Q96DE0 195 aaKnown RBP20.68■□□□□ 0.9
VRK3-207ENST00000594092 CABP1Q9NZU7 370 aa20.68■□□□□ 0.9
VRK3-207ENST00000594092 NSD3Q9BZ95 1437 aa20.68■□□□□ 0.9
VRK3-207ENST00000594092 A0A1W2PP64 1363 aa20.67■□□□□ 0.9
VRK3-207ENST00000594092 CD163L1Q9NR16 1453 aa20.67■□□□□ 0.9
VRK3-207ENST00000594092 STRCQ7RTU9 1775 aa20.67■□□□□ 0.9
VRK3-207ENST00000594092 ATP7BP35670 1465 aa20.67■□□□□ 0.9
VRK3-207ENST00000594092 CCDC184Q52MB2 194 aa20.67■□□□□ 0.9
VRK3-207ENST00000594092 PRR36Q9H6K5 1346 aa20.66■□□□□ 0.9
VRK3-207ENST00000594092 MYBBP1AQ9BQG0 1328 aaKnown RBP20.65■□□□□ 0.9
VRK3-207ENST00000594092 TERF2IPQ9NYB0 399 aa20.65■□□□□ 0.9
VRK3-207ENST00000594092 PPIP5K1Q6PFW1 1433 aa20.65■□□□□ 0.9
VRK3-207ENST00000594092 CCDC61Q9Y6R9 512 aa20.64■□□□□ 0.9
VRK3-207ENST00000594092 USP32Q8NFA0 1604 aa20.64■□□□□ 0.89
VRK3-207ENST00000594092 HDGFL2Q7Z4V5 671 aaPredicted RBP20.62■□□□□ 0.89
VRK3-207ENST00000594092 NALCNQ8IZF0 1738 aa20.62■□□□□ 0.89
VRK3-207ENST00000594092 MRS2Q9HD23 443 aa20.62■□□□□ 0.89
VRK3-207ENST00000594092 NKTRP30414 1462 aaKnown RBP20.61■□□□□ 0.89
VRK3-207ENST00000594092 RBM33Q96EV2 1170 aaKnown RBP20.61■□□□□ 0.89
VRK3-207ENST00000594092 TOPAZ1Q8N9V7 1692 aa20.61■□□□□ 0.89
VRK3-207ENST00000594092 CGNL1Q0VF96 1302 aa20.6■□□□□ 0.89
VRK3-207ENST00000594092 CPSF1Q10570 1443 aaKnown RBP20.6■□□□□ 0.89
VRK3-207ENST00000594092 ADGRL3Q9HAR2 1447 aa20.6■□□□□ 0.89
VRK3-207ENST00000594092 NUTM2FA1L443 756 aa20.6■□□□□ 0.89
VRK3-207ENST00000594092 CDC42BPGQ6DT37 1551 aa20.59■□□□□ 0.89
VRK3-207ENST00000594092 NLRP13Q86W25 1043 aa20.58■□□□□ 0.89
VRK3-207ENST00000594092 PROSER2Q86WR7 435 aaPredicted RBP20.58■□□□□ 0.89
VRK3-207ENST00000594092 BRD4O60885 1362 aaPredicted RBP20.58■□□□□ 0.89
VRK3-207ENST00000594092 STRCP1A6NGW2 1772 aa20.58■□□□□ 0.89
VRK3-207ENST00000594092 FMN2Q9NZ56 1722 aa20.58■□□□□ 0.88
VRK3-207ENST00000594092 ANKARQ7Z5J8 1434 aa20.57■□□□□ 0.88
VRK3-207ENST00000594092 PLEKHG3A1L390 1219 aa20.56■□□□□ 0.88
VRK3-207ENST00000594092 NSD2O96028 1365 aa20.56■□□□□ 0.88
VRK3-207ENST00000594092 ITSN1Q15811 1721 aa20.54■□□□□ 0.88
VRK3-207ENST00000594092 AKAP12Q02952 1782 aa20.54■□□□□ 0.88
VRK3-207ENST00000594092 PPP2R1AP30153 589 aa20.54■□□□□ 0.88
VRK3-207ENST00000594092 RGPD8O14715 1765 aaPredicted RBP20.54■□□□□ 0.88
VRK3-207ENST00000594092 C14orf37Q86TY3 774 aa20.53■□□□□ 0.88
VRK3-207ENST00000594092 EDC4Q6P2E9 1401 aaKnown RBP20.53■□□□□ 0.88
VRK3-207ENST00000594092 ZNF692Q9BU19 519 aaPredicted RBP20.53■□□□□ 0.88
VRK3-207ENST00000594092 ACEP12821 1306 aa20.52■□□□□ 0.88
VRK3-207ENST00000594092 MON2Q7Z3U7 1717 aa20.52■□□□□ 0.88
VRK3-207ENST00000594092 MORC1Q86VD1 984 aa20.52■□□□□ 0.88
VRK3-207ENST00000594092 FYB1O15117 783 aa20.51■□□□□ 0.87
VRK3-207ENST00000594092 TMEM94Q12767 1356 aa20.5■□□□□ 0.87
VRK3-207ENST00000594092 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.49■□□□□ 0.87
VRK3-207ENST00000594092 FAM9BQ8IZU0 186 aa20.49■□□□□ 0.87
VRK3-207ENST00000594092 GGNBP2Q9H3C7 697 aa20.49■□□□□ 0.87
VRK3-207ENST00000594092 NCOA3Q9Y6Q9 1424 aa20.49■□□□□ 0.87
VRK3-207ENST00000594092 KIF20BQ96Q89 1820 aa20.48■□□□□ 0.87
VRK3-207ENST00000594092 POLR3AO14802 1390 aaPredicted RBP20.48■□□□□ 0.87
VRK3-207ENST00000594092 PMFBP1Q8TBY8 1022 aa20.48■□□□□ 0.87
VRK3-207ENST00000594092 PNISRQ8TF01 805 aaKnown RBP20.48■□□□□ 0.87
VRK3-207ENST00000594092 C19orf44Q9H6X5 657 aa20.48■□□□□ 0.87
VRK3-207ENST00000594092 ANKRD26Q9UPS8 1709 aa20.47■□□□□ 0.87
VRK3-207ENST00000594092 ZNF335Q9H4Z2 1342 aaPredicted RBP20.47■□□□□ 0.87
VRK3-207ENST00000594092 DMRT2Q9Y5R5 561 aa20.47■□□□□ 0.87
VRK3-207ENST00000594092 USP6P35125 1406 aa20.47■□□□□ 0.87
VRK3-207ENST00000594092 NRKQ7Z2Y5 1582 aa20.46■□□□□ 0.87
VRK3-207ENST00000594092 NGDNQ8NEJ9 315 aaKnown RBP20.46■□□□□ 0.87
VRK3-207ENST00000594092 TNNT2P45379 298 aaPredicted RBP20.45■□□□□ 0.86
VRK3-207ENST00000594092 TTC21BQ7Z4L5 1316 aa20.44■□□□□ 0.86
VRK3-207ENST00000594092 NME9Q86XW9 330 aa20.43■□□□□ 0.86
VRK3-207ENST00000594092 SSH2Q76I76 1423 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms