RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 AMER1Q5JTC6 1135 aaPredicted RBP18.16■□□□□ 0.5
VRK3-205ENST00000593919 WAPLQ7Z5K2 1190 aa18.16■□□□□ 0.5
VRK3-205ENST00000593919 EVC2Q86UK5 1308 aa18.16■□□□□ 0.5
VRK3-205ENST00000593919 MINK1Q8N4C8 1332 aaPredicted RBP18.15■□□□□ 0.5
VRK3-205ENST00000593919 FAM135BQ49AJ0 1406 aa18.15■□□□□ 0.5
VRK3-205ENST00000593919 PANK3Q9H999 370 aa18.13■□□□□ 0.49
VRK3-205ENST00000593919 XRN1Q8IZH2 1706 aaKnown RBP18.13■□□□□ 0.49
VRK3-205ENST00000593919 ROBO2Q9HCK4 1378 aa18.13■□□□□ 0.49
VRK3-205ENST00000593919 SIRT1Q96EB6 747 aa18.12■□□□□ 0.49
VRK3-205ENST00000593919 PRKRIP1Q9H875 184 aaPredicted RBP18.12■□□□□ 0.49
VRK3-205ENST00000593919 CHD2O14647 1828 aaKnown RBP18.12■□□□□ 0.49
VRK3-205ENST00000593919 PER1O15534 1290 aaPredicted RBP18.11■□□□□ 0.49
VRK3-205ENST00000593919 NPHP4O75161 1426 aaPredicted RBP18.11■□□□□ 0.49
VRK3-205ENST00000593919 AMOTL2Q9Y2J4 779 aa18.1■□□□□ 0.49
VRK3-205ENST00000593919 PTCH1Q13635 1447 aa18.1■□□□□ 0.49
VRK3-205ENST00000593919 PIK3R4Q99570 1358 aa18.1■□□□□ 0.49
VRK3-205ENST00000593919 PUS7Q96PZ0 661 aaKnown RBP18.1■□□□□ 0.49
VRK3-205ENST00000593919 CABP2Q9NPB3 220 aa18.1■□□□□ 0.49
VRK3-205ENST00000593919 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.09■□□□□ 0.49
VRK3-205ENST00000593919 NCKAP5LQ9HCH0 1330 aa18.08■□□□□ 0.49
VRK3-205ENST00000593919 CCER2I3L3R5 266 aa18.08■□□□□ 0.48
VRK3-205ENST00000593919 SRPK2P78362 688 aaKnown RBP18.08■□□□□ 0.48
VRK3-205ENST00000593919 CNGB1Q14028 1251 aaPredicted RBP18.08■□□□□ 0.48
VRK3-205ENST00000593919 LMTK3Q96Q04 1460 aa18.07■□□□□ 0.48
VRK3-205ENST00000593919 ADGRB2O60241 1585 aa18.06■□□□□ 0.48
VRK3-205ENST00000593919 TMC1Q8TDI8 760 aa18.06■□□□□ 0.48
VRK3-205ENST00000593919 CDK19Q9BWU1 502 aa18.06■□□□□ 0.48
VRK3-205ENST00000593919 ATAD2Q6PL18 1390 aa18.05■□□□□ 0.48
VRK3-205ENST00000593919 SLC12A5Q9H2X9 1139 aa18.05■□□□□ 0.48
VRK3-205ENST00000593919 HSPA2P54652 639 aa18.04■□□□□ 0.48
VRK3-205ENST00000593919 KCNA6P17658 529 aa18.04■□□□□ 0.48
VRK3-205ENST00000593919 KNSTRNQ9Y448 316 aa18.03■□□□□ 0.48
VRK3-205ENST00000593919 KTN1Q86UP2 1357 aaKnown RBP18.02■□□□□ 0.48
VRK3-205ENST00000593919 NINLQ9Y2I6 1382 aa18.02■□□□□ 0.48
VRK3-205ENST00000593919 WASLO00401 505 aaPredicted RBP18.02■□□□□ 0.48
VRK3-205ENST00000593919 CARD14Q9BXL6 1004 aa18■□□□□ 0.47
VRK3-205ENST00000593919 ANKRD36BQ8N2N9 1353 aa18■□□□□ 0.47
VRK3-205ENST00000593919 PARD3Q8TEW0 1356 aa18■□□□□ 0.47
VRK3-205ENST00000593919 CC2D1BQ5T0F9 858 aaKnown RBP18■□□□□ 0.47
VRK3-205ENST00000593919 STRCQ7RTU9 1775 aa18■□□□□ 0.47
VRK3-205ENST00000593919 NWD1Q149M9 1564 aa17.99■□□□□ 0.47
VRK3-205ENST00000593919 NSD3Q9BZ95 1437 aa17.99■□□□□ 0.47
VRK3-205ENST00000593919 RALBP1Q15311 655 aa17.99■□□□□ 0.47
VRK3-205ENST00000593919 ATP7BP35670 1465 aa17.97■□□□□ 0.47
VRK3-205ENST00000593919 CD163L1Q9NR16 1453 aa17.97■□□□□ 0.47
VRK3-205ENST00000593919 USP32Q8NFA0 1604 aa17.97■□□□□ 0.47
VRK3-205ENST00000593919 A0A1W2PP64 1363 aa17.97■□□□□ 0.47
VRK3-205ENST00000593919 NALCNQ8IZF0 1738 aa17.97■□□□□ 0.47
VRK3-205ENST00000593919 CCDC184Q52MB2 194 aa17.97■□□□□ 0.47
VRK3-205ENST00000593919 NPC1L1Q9UHC9 1359 aa17.96■□□□□ 0.47
VRK3-205ENST00000593919 TOPAZ1Q8N9V7 1692 aa17.96■□□□□ 0.46
VRK3-205ENST00000593919 CABP1Q9NZU7 370 aa17.95■□□□□ 0.46
VRK3-205ENST00000593919 MYBBP1AQ9BQG0 1328 aaKnown RBP17.95■□□□□ 0.46
VRK3-205ENST00000593919 PPIP5K1Q6PFW1 1433 aa17.95■□□□□ 0.46
VRK3-205ENST00000593919 RGPD8O14715 1765 aaPredicted RBP17.95■□□□□ 0.46
VRK3-205ENST00000593919 PRR36Q9H6K5 1346 aa17.94■□□□□ 0.46
VRK3-205ENST00000593919 NCBP3Q53F19 620 aaKnown RBP17.94■□□□□ 0.46
VRK3-205ENST00000593919 NUDT16Q96DE0 195 aaKnown RBP17.94■□□□□ 0.46
VRK3-205ENST00000593919 STRCP1A6NGW2 1772 aa17.94■□□□□ 0.46
VRK3-205ENST00000593919 MRS2Q9HD23 443 aa17.93■□□□□ 0.46
VRK3-205ENST00000593919 TERF2IPQ9NYB0 399 aa17.93■□□□□ 0.46
VRK3-205ENST00000593919 ITSN1Q15811 1721 aa17.92■□□□□ 0.46
VRK3-205ENST00000593919 CCDC61Q9Y6R9 512 aa17.92■□□□□ 0.46
VRK3-205ENST00000593919 FMN2Q9NZ56 1722 aa17.92■□□□□ 0.46
VRK3-205ENST00000593919 CDC42BPGQ6DT37 1551 aa17.91■□□□□ 0.46
VRK3-205ENST00000593919 AKAP12Q02952 1782 aa17.91■□□□□ 0.46
VRK3-205ENST00000593919 RBM33Q96EV2 1170 aaKnown RBP17.91■□□□□ 0.46
VRK3-205ENST00000593919 NKTRP30414 1462 aaKnown RBP17.91■□□□□ 0.46
VRK3-205ENST00000593919 NUTM2FA1L443 756 aa17.9■□□□□ 0.46
VRK3-205ENST00000593919 HDGFL2Q7Z4V5 671 aaPredicted RBP17.9■□□□□ 0.46
VRK3-205ENST00000593919 MON2Q7Z3U7 1717 aa17.9■□□□□ 0.46
VRK3-205ENST00000593919 CGNL1Q0VF96 1302 aa17.9■□□□□ 0.46
VRK3-205ENST00000593919 DAXXQ9UER7 740 aaPredicted RBP17.9■□□□□ 0.46
VRK3-205ENST00000593919 ADGRL3Q9HAR2 1447 aa17.89■□□□□ 0.46
VRK3-205ENST00000593919 CPSF1Q10570 1443 aaKnown RBP17.89■□□□□ 0.45
VRK3-205ENST00000593919 KIF20BQ96Q89 1820 aa17.89■□□□□ 0.45
VRK3-205ENST00000593919 BRD4O60885 1362 aaPredicted RBP17.89■□□□□ 0.45
VRK3-205ENST00000593919 NLRP13Q86W25 1043 aa17.88■□□□□ 0.45
VRK3-205ENST00000593919 ANKRD26Q9UPS8 1709 aa17.87■□□□□ 0.45
VRK3-205ENST00000593919 NSD2O96028 1365 aa17.86■□□□□ 0.45
VRK3-205ENST00000593919 ANKARQ7Z5J8 1434 aa17.85■□□□□ 0.45
VRK3-205ENST00000593919 PPP2R1AP30153 589 aa17.84■□□□□ 0.45
VRK3-205ENST00000593919 PROSER2Q86WR7 435 aaPredicted RBP17.84■□□□□ 0.45
VRK3-205ENST00000593919 EDC4Q6P2E9 1401 aaKnown RBP17.84■□□□□ 0.45
VRK3-205ENST00000593919 NRKQ7Z2Y5 1582 aa17.83■□□□□ 0.45
VRK3-205ENST00000593919 PLEKHG3A1L390 1219 aa17.83■□□□□ 0.44
VRK3-205ENST00000593919 C14orf37Q86TY3 774 aa17.83■□□□□ 0.44
VRK3-205ENST00000593919 FAM9BQ8IZU0 186 aa17.83■□□□□ 0.44
VRK3-205ENST00000593919 KCNA4P22459 653 aa17.82■□□□□ 0.44
VRK3-205ENST00000593919 MORC1Q86VD1 984 aa17.82■□□□□ 0.44
VRK3-205ENST00000593919 ACEP12821 1306 aa17.82■□□□□ 0.44
VRK3-205ENST00000593919 FYB1O15117 783 aa17.81■□□□□ 0.44
VRK3-205ENST00000593919 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.8■□□□□ 0.44
VRK3-205ENST00000593919 GGNBP2Q9H3C7 697 aa17.8■□□□□ 0.44
VRK3-205ENST00000593919 XIRP1Q702N8 1843 aaKnown RBP17.8■□□□□ 0.44
VRK3-205ENST00000593919 PNISRQ8TF01 805 aaKnown RBP17.8■□□□□ 0.44
VRK3-205ENST00000593919 ZNF692Q9BU19 519 aaPredicted RBP17.8■□□□□ 0.44
VRK3-205ENST00000593919 SUPT16HQ9Y5B9 1047 aaKnown RBP17.8■□□□□ 0.44
VRK3-205ENST00000593919 TMEM94Q12767 1356 aa17.8■□□□□ 0.44
VRK3-205ENST00000593919 PMFBP1Q8TBY8 1022 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms