RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CDCA7LQ96GN5 454 aa26.16■■□□□ 1.78
CLIP3-206ENST00000593074 B4GALNT3Q6L9W6 998 aa26.15■■□□□ 1.78
CLIP3-206ENST00000593074 RRP1P56182 461 aaKnown RBP26.14■■□□□ 1.77
CLIP3-206ENST00000593074 SAFB2Q14151 953 aaKnown RBP eCLIP26.14■■□□□ 1.77
CLIP3-206ENST00000593074 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.14■■□□□ 1.77
CLIP3-206ENST00000593074 ANKRD36BQ8N2N9 1353 aa26.14■■□□□ 1.77
CLIP3-206ENST00000593074 POGKQ9P215 609 aa26.13■■□□□ 1.77
CLIP3-206ENST00000593074 POLR3AO14802 1390 aaPredicted RBP26.12■■□□□ 1.77
CLIP3-206ENST00000593074 TNRQ92752 1358 aa26.12■■□□□ 1.77
CLIP3-206ENST00000593074 PLEKHH1Q9ULM0 1364 aa26.12■■□□□ 1.77
CLIP3-206ENST00000593074 NINLQ9Y2I6 1382 aa26.12■■□□□ 1.77
CLIP3-206ENST00000593074 TRHP20396 242 aaPredicted RBP26.11■■□□□ 1.77
CLIP3-206ENST00000593074 ZNF521Q96K83 1311 aa26.11■■□□□ 1.77
CLIP3-206ENST00000593074 PRAM1Q96QH2 718 aa26.11■■□□□ 1.77
CLIP3-206ENST00000593074 HDGFP51858 240 aaKnown RBP26.1■■□□□ 1.77
CLIP3-206ENST00000593074 CABP2Q9NPB3 220 aa26.09■■□□□ 1.77
CLIP3-206ENST00000593074 CGNL1Q0VF96 1302 aa26.09■■□□□ 1.77
CLIP3-206ENST00000593074 NSD2O96028 1365 aa26.08■■□□□ 1.77
CLIP3-206ENST00000593074 SETD1AO15047 1707 aaKnown RBP26.08■■□□□ 1.77
CLIP3-206ENST00000593074 SHPRHQ149N8 1683 aa26.07■■□□□ 1.76
CLIP3-206ENST00000593074 SRPK2P78362 688 aaKnown RBP26.05■■□□□ 1.76
CLIP3-206ENST00000593074 MORC1Q86VD1 984 aa26.05■■□□□ 1.76
CLIP3-206ENST00000593074 MINK1Q8N4C8 1332 aaPredicted RBP26.05■■□□□ 1.76
CLIP3-206ENST00000593074 DLC1Q96QB1 1528 aa26.05■■□□□ 1.76
CLIP3-206ENST00000593074 RBM19Q9Y4C8 960 aaKnown RBP26.05■■□□□ 1.76
CLIP3-206ENST00000593074 ATAD2Q6PL18 1390 aa26.04■■□□□ 1.76
CLIP3-206ENST00000593074 ABCC11Q96J66 1382 aa26■■□□□ 1.75
CLIP3-206ENST00000593074 CCDC136Q96JN2 1154 aa26■■□□□ 1.75
CLIP3-206ENST00000593074 NRXN3Q9Y4C0 1643 aa26■■□□□ 1.75
CLIP3-206ENST00000593074 A0A1W2PP64 1363 aa26■■□□□ 1.75
CLIP3-206ENST00000593074 DUSP27Q5VZP5 1158 aa25.99■■□□□ 1.75
CLIP3-206ENST00000593074 CCDC146Q8IYE0 955 aa25.99■■□□□ 1.75
CLIP3-206ENST00000593074 NGEFQ8N5V2 710 aa25.99■■□□□ 1.75
CLIP3-206ENST00000593074 GOLGA2Q08379 1002 aa25.99■■□□□ 1.75
CLIP3-206ENST00000593074 TMEM2Q9UHN6 1383 aa25.98■■□□□ 1.75
CLIP3-206ENST00000593074 CEBPAP49715 358 aaPredicted RBP25.97■■□□□ 1.75
CLIP3-206ENST00000593074 CDK19Q9BWU1 502 aa25.97■■□□□ 1.75
CLIP3-206ENST00000593074 CD163L1Q9NR16 1453 aa25.96■■□□□ 1.75
CLIP3-206ENST00000593074 APAF1O14727 1248 aa25.95■■□□□ 1.75
CLIP3-206ENST00000593074 WAPLQ7Z5K2 1190 aa25.95■■□□□ 1.74
CLIP3-206ENST00000593074 ANKRD26Q9UPS8 1709 aa25.95■■□□□ 1.74
CLIP3-206ENST00000593074 NLRP1Q9C000 1473 aa25.94■■□□□ 1.74
CLIP3-206ENST00000593074 TRMT2AQ8IZ69 625 aaKnown RBP25.94■■□□□ 1.74
CLIP3-206ENST00000593074 TERF2IPQ9NYB0 399 aa25.94■■□□□ 1.74
CLIP3-206ENST00000593074 METP08581 1390 aa25.94■■□□□ 1.74
CLIP3-206ENST00000593074 MED14O60244 1454 aa25.93■■□□□ 1.74
CLIP3-206ENST00000593074 TNNT2P45379 298 aaPredicted RBP25.93■■□□□ 1.74
CLIP3-206ENST00000593074 SLFN5Q08AF3 891 aa25.93■■□□□ 1.74
CLIP3-206ENST00000593074 EXOC6Q8TAG9 804 aa25.93■■□□□ 1.74
CLIP3-206ENST00000593074 UBR1Q8IWV7 1749 aa25.93■■□□□ 1.74
CLIP3-206ENST00000593074 IQSEC2Q5JU85 1478 aa25.91■■□□□ 1.74
CLIP3-206ENST00000593074 MTHFSP49914 203 aa25.91■■□□□ 1.74
CLIP3-206ENST00000593074 SIRT1Q96EB6 747 aa25.9■■□□□ 1.74
CLIP3-206ENST00000593074 KNDC1Q76NI1 1749 aa25.89■■□□□ 1.74
CLIP3-206ENST00000593074 CFAP53Q96M91 514 aa25.89■■□□□ 1.73
CLIP3-206ENST00000593074 HDGFL2Q7Z4V5 671 aaPredicted RBP25.87■■□□□ 1.73
CLIP3-206ENST00000593074 TXNDC2Q86VQ3 553 aa25.87■■□□□ 1.73
CLIP3-206ENST00000593074 NKTRP30414 1462 aaKnown RBP25.87■■□□□ 1.73
CLIP3-206ENST00000593074 CABP1Q9NZU7 370 aa25.86■■□□□ 1.73
CLIP3-206ENST00000593074 E9PSI1 815 aa25.85■■□□□ 1.73
CLIP3-206ENST00000593074 PLIN1O60240 522 aa25.85■■□□□ 1.73
CLIP3-206ENST00000593074 LTKP29376 864 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 PLPPR3Q6T4P5 718 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 ATP7BP35670 1465 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 TECPR2O15040 1411 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 FAM135BQ49AJ0 1406 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 KIF20BQ96Q89 1820 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 RUNDC1Q96C34 613 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 SPINK5Q9NQ38 1064 aaPredicted RBP25.84■■□□□ 1.73
CLIP3-206ENST00000593074 EID1Q9Y6B2 187 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 C3P01024 1663 aa25.84■■□□□ 1.73
CLIP3-206ENST00000593074 PLEKHG1Q9ULL1 1385 aa25.83■■□□□ 1.73
CLIP3-206ENST00000593074 CPS1P31327 1500 aa25.83■■□□□ 1.72
CLIP3-206ENST00000593074 WASLO00401 505 aaPredicted RBP25.82■■□□□ 1.72
CLIP3-206ENST00000593074 FER1L4A9Z1Z3 1794 aa25.82■■□□□ 1.72
CLIP3-206ENST00000593074 COL3A1P02461 1466 aaPredicted RBP25.81■■□□□ 1.72
CLIP3-206ENST00000593074 FYB1O15117 783 aa25.81■■□□□ 1.72
CLIP3-206ENST00000593074 ADAMTS13Q76LX8 1427 aa25.81■■□□□ 1.72
CLIP3-206ENST00000593074 WWC1Q8IX03 1113 aa25.8■■□□□ 1.72
CLIP3-206ENST00000593074 ADGRB2O60241 1585 aa25.8■■□□□ 1.72
CLIP3-206ENST00000593074 PHF23Q9BUL5 403 aaPredicted RBP25.79■■□□□ 1.72
CLIP3-206ENST00000593074 GGNBP2Q9H3C7 697 aa25.79■■□□□ 1.72
CLIP3-206ENST00000593074 DMRT2Q9Y5R5 561 aa25.79■■□□□ 1.72
CLIP3-206ENST00000593074 THEMISQ8N1K5 641 aaPredicted RBP25.78■■□□□ 1.72
CLIP3-206ENST00000593074 CRBNQ96SW2 442 aa25.78■■□□□ 1.72
CLIP3-206ENST00000593074 NCBP3Q53F19 620 aaKnown RBP25.77■■□□□ 1.72
CLIP3-206ENST00000593074 FANCIQ9NVI1 1328 aa25.77■■□□□ 1.72
CLIP3-206ENST00000593074 TCP11L2Q8N4U5 519 aa25.76■■□□□ 1.71
CLIP3-206ENST00000593074 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.75■■□□□ 1.71
CLIP3-206ENST00000593074 SLIT1O75093 1534 aa25.74■■□□□ 1.71
CLIP3-206ENST00000593074 CCDC27Q2M243 656 aa25.74■■□□□ 1.71
CLIP3-206ENST00000593074 C20orf194Q5TEA3 1177 aa25.74■■□□□ 1.71
CLIP3-206ENST00000593074 ARHGAP23Q9P227 1491 aa25.74■■□□□ 1.71
CLIP3-206ENST00000593074 CPSF1Q10570 1443 aaKnown RBP25.72■■□□□ 1.71
CLIP3-206ENST00000593074 NUDT16Q96DE0 195 aaKnown RBP25.72■■□□□ 1.71
CLIP3-206ENST00000593074 SLC26A8Q96RN1 970 aa25.72■■□□□ 1.71
CLIP3-206ENST00000593074 ROBO2Q9HCK4 1378 aa25.72■■□□□ 1.71
CLIP3-206ENST00000593074 PNPLA6Q8IY17 1366 aa25.71■■□□□ 1.71
CLIP3-206ENST00000593074 U2AF1L5P0DN76 240 aaPredicted RBP25.7■■□□□ 1.71
CLIP3-206ENST00000593074 U2AF1Q01081 240 aaKnown RBP eCLIP25.7■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms