RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TRPM1Q7Z4N2 1603 aa17.11■□□□□ 0.33
LIG3-213ENST00000590630 CLSPNQ9HAW4 1339 aa17.11■□□□□ 0.33
LIG3-213ENST00000590630 PLEKHH1Q9ULM0 1364 aa17.11■□□□□ 0.33
LIG3-213ENST00000590630 PRAM1Q96QH2 718 aa17.09■□□□□ 0.33
LIG3-213ENST00000590630 TRAK1Q9UPV9 953 aa17.09■□□□□ 0.33
LIG3-213ENST00000590630 PHLPP1O60346 1717 aa17.09■□□□□ 0.33
LIG3-213ENST00000590630 FMN2Q9NZ56 1722 aa17.08■□□□□ 0.32
LIG3-213ENST00000590630 ADGRB2O60241 1585 aa17.08■□□□□ 0.32
LIG3-213ENST00000590630 POGKQ9P215 609 aa17.08■□□□□ 0.32
LIG3-213ENST00000590630 AHDC1Q5TGY3 1603 aaPredicted RBP17.07■□□□□ 0.32
LIG3-213ENST00000590630 C1orf167Q5SNV9 1468 aa17.07■□□□□ 0.32
LIG3-213ENST00000590630 NBPF1Q3BBV0 1214 aa17.06■□□□□ 0.32
LIG3-213ENST00000590630 BRINP3Q76B58 766 aa17.06■□□□□ 0.32
LIG3-213ENST00000590630 NHSL1Q5SYE7 1610 aa17.06■□□□□ 0.32
LIG3-213ENST00000590630 COL16A1Q07092 1604 aaPredicted RBP17.04■□□□□ 0.32
LIG3-213ENST00000590630 SAFB2Q14151 953 aaKnown RBP eCLIP17.04■□□□□ 0.32
LIG3-213ENST00000590630 ROCK2O75116 1388 aaKnown RBP17.02■□□□□ 0.32
LIG3-213ENST00000590630 RGPD8O14715 1765 aaPredicted RBP17.02■□□□□ 0.31
LIG3-213ENST00000590630 NBPF8Q3BBV2 869 aa17.01■□□□□ 0.31
LIG3-213ENST00000590630 CCER1Q8TC90 406 aaPredicted RBP17.01■□□□□ 0.31
LIG3-213ENST00000590630 RALGAPBQ86X10 1494 aa17■□□□□ 0.31
LIG3-213ENST00000590630 TIMELESSQ9UNS1 1208 aa17■□□□□ 0.31
LIG3-213ENST00000590630 KIF1AQ12756 1690 aa17■□□□□ 0.31
LIG3-213ENST00000590630 GPRASP1Q5JY77 1395 aa17■□□□□ 0.31
LIG3-213ENST00000590630 MINK1Q8N4C8 1332 aaPredicted RBP16.99■□□□□ 0.31
LIG3-213ENST00000590630 ORAI2Q96SN7 254 aa16.99■□□□□ 0.31
LIG3-213ENST00000590630 QRICH2Q9H0J4 1663 aa16.99■□□□□ 0.31
LIG3-213ENST00000590630 EIF3AQ14152 1382 aaKnown RBP16.99■□□□□ 0.31
LIG3-213ENST00000590630 ANKARQ7Z5J8 1434 aa16.98■□□□□ 0.31
LIG3-213ENST00000590630 USP32Q8NFA0 1604 aa16.97■□□□□ 0.31
LIG3-213ENST00000590630 ESCO1Q5FWF5 840 aa16.97■□□□□ 0.31
LIG3-213ENST00000590630 HIRIP3Q9BW71 556 aaPredicted RBP16.97■□□□□ 0.31
LIG3-213ENST00000590630 SHPRHQ149N8 1683 aa16.97■□□□□ 0.31
LIG3-213ENST00000590630 CENPJQ9HC77 1338 aaPredicted RBP16.96■□□□□ 0.31
LIG3-213ENST00000590630 TULP4Q9NRJ4 1543 aa16.96■□□□□ 0.31
LIG3-213ENST00000590630 NUTM2FA1L443 756 aa16.96■□□□□ 0.31
LIG3-213ENST00000590630 JCADQ9P266 1359 aa16.96■□□□□ 0.31
LIG3-213ENST00000590630 ITSN1Q15811 1721 aa16.96■□□□□ 0.3
LIG3-213ENST00000590630 WASLO00401 505 aaPredicted RBP16.95■□□□□ 0.3
LIG3-213ENST00000590630 MED1Q15648 1581 aaPredicted RBP16.94■□□□□ 0.3
LIG3-213ENST00000590630 NPHP3Q7Z494 1330 aa16.94■□□□□ 0.3
LIG3-213ENST00000590630 CARD11Q9BXL7 1154 aa16.93■□□□□ 0.3
LIG3-213ENST00000590630 SOS2Q07890 1332 aaPredicted RBP16.93■□□□□ 0.3
LIG3-213ENST00000590630 DDX17Q92841 729 aaKnown RBP16.92■□□□□ 0.3
LIG3-213ENST00000590630 LRRC59Q96AG4 307 aaKnown RBP16.92■□□□□ 0.3
LIG3-213ENST00000590630 PHF8Q9UPP1 1060 aa16.91■□□□□ 0.3
LIG3-213ENST00000590630 ATP7BP35670 1465 aa16.91■□□□□ 0.3
LIG3-213ENST00000590630 PXDNQ92626 1479 aa16.91■□□□□ 0.3
LIG3-213ENST00000590630 FOXO3O43524 673 aa16.9■□□□□ 0.3
LIG3-213ENST00000590630 TOPAZ1Q8N9V7 1692 aa16.9■□□□□ 0.3
LIG3-213ENST00000590630 CDK19Q9BWU1 502 aa16.89■□□□□ 0.29
LIG3-213ENST00000590630 SPATA31A6Q5VVP1 1343 aa16.89■□□□□ 0.29
LIG3-213ENST00000590630 PRR36Q9H6K5 1346 aa16.89■□□□□ 0.29
LIG3-213ENST00000590630 SBNO2Q9Y2G9 1366 aa16.88■□□□□ 0.29
LIG3-213ENST00000590630 DISP3Q9P2K9 1392 aa16.87■□□□□ 0.29
LIG3-213ENST00000590630 COL22A1Q8NFW1 1626 aaPredicted RBP16.86■□□□□ 0.29
LIG3-213ENST00000590630 NUDT16Q96DE0 195 aaKnown RBP16.86■□□□□ 0.29
LIG3-213ENST00000590630 EVC2Q86UK5 1308 aa16.86■□□□□ 0.29
LIG3-213ENST00000590630 PNPLA6Q8IY17 1366 aa16.86■□□□□ 0.29
LIG3-213ENST00000590630 SRPK2P78362 688 aaKnown RBP16.85■□□□□ 0.29
LIG3-213ENST00000590630 XPCQ01831 940 aaPredicted RBP16.84■□□□□ 0.29
LIG3-213ENST00000590630 PMFBP1Q8TBY8 1022 aa16.84■□□□□ 0.29
LIG3-213ENST00000590630 CCDC61Q9Y6R9 512 aa16.84■□□□□ 0.29
LIG3-213ENST00000590630 PSME1Q06323 249 aa16.83■□□□□ 0.28
LIG3-213ENST00000590630 KRT28Q7Z3Y7 464 aa16.83■□□□□ 0.28
LIG3-213ENST00000590630 TRPM3Q9HCF6 1732 aaPredicted RBP16.83■□□□□ 0.28
LIG3-213ENST00000590630 LRP6O75581 1613 aa16.82■□□□□ 0.28
LIG3-213ENST00000590630 SBNO1A3KN83 1393 aa16.82■□□□□ 0.28
LIG3-213ENST00000590630 TNS3Q68CZ2 1445 aa16.81■□□□□ 0.28
LIG3-213ENST00000590630 SPATA31A3Q5VYP0 1347 aa16.81■□□□□ 0.28
LIG3-213ENST00000590630 NGDNQ8NEJ9 315 aaKnown RBP16.81■□□□□ 0.28
LIG3-213ENST00000590630 PHF23Q9BUL5 403 aaPredicted RBP16.81■□□□□ 0.28
LIG3-213ENST00000590630 CABP2Q9NPB3 220 aa16.81■□□□□ 0.28
LIG3-213ENST00000590630 PPIP5K1Q6PFW1 1433 aa16.8■□□□□ 0.28
LIG3-213ENST00000590630 POLR3AO14802 1390 aaPredicted RBP16.8■□□□□ 0.28
LIG3-213ENST00000590630 USP47Q96K76 1375 aa16.8■□□□□ 0.28
LIG3-213ENST00000590630 PLEKHG3A1L390 1219 aa16.8■□□□□ 0.28
LIG3-213ENST00000590630 ALS2Q96Q42 1657 aa16.79■□□□□ 0.28
LIG3-213ENST00000590630 SLC24A1O60721 1099 aa16.79■□□□□ 0.28
LIG3-213ENST00000590630 ARHGEF10O15013 1369 aa16.78■□□□□ 0.28
LIG3-213ENST00000590630 ATAD2Q6PL18 1390 aa16.78■□□□□ 0.28
LIG3-213ENST00000590630 ST20-MTHFSA0A0A6YYL1 179 aa16.78■□□□□ 0.28
LIG3-213ENST00000590630 NUTM2BA6NNL0 878 aaPredicted RBP16.78■□□□□ 0.28
LIG3-213ENST00000590630 NUTM2EB1AL46 878 aaPredicted RBP16.78■□□□□ 0.28
LIG3-213ENST00000590630 NUTM2AQ8IVF1 878 aaPredicted RBP16.78■□□□□ 0.28
LIG3-213ENST00000590630 MARF1Q9Y4F3 1742 aaKnown RBP16.77■□□□□ 0.28
LIG3-213ENST00000590630 MEX3CQ5U5Q3 659 aaKnown RBP16.77■□□□□ 0.28
LIG3-213ENST00000590630 ACEP12821 1306 aa16.76■□□□□ 0.27
LIG3-213ENST00000590630 TESK2Q96S53 571 aa16.76■□□□□ 0.27
LIG3-213ENST00000590630 ABCA3Q99758 1704 aa16.75■□□□□ 0.27
LIG3-213ENST00000590630 AKAP12Q02952 1782 aa16.74■□□□□ 0.27
LIG3-213ENST00000590630 PUS7Q96PZ0 661 aaKnown RBP16.74■□□□□ 0.27
LIG3-213ENST00000590630 CABP1Q9NZU7 370 aa16.74■□□□□ 0.27
LIG3-213ENST00000590630 LMOD2Q6P5Q4 547 aa16.73■□□□□ 0.27
LIG3-213ENST00000590630 BRD4O60885 1362 aaPredicted RBP16.73■□□□□ 0.27
LIG3-213ENST00000590630 PAK3O75914 559 aaPredicted RBP16.71■□□□□ 0.27
LIG3-213ENST00000590630 RGS17Q9UGC6 210 aaPredicted RBP16.71■□□□□ 0.27
LIG3-213ENST00000590630 USP6P35125 1406 aa16.7■□□□□ 0.26
LIG3-213ENST00000590630 CRYBG1Q9Y4K1 1723 aa16.7■□□□□ 0.26
LIG3-213ENST00000590630 ADAMTS2O95450 1211 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms