RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 LRP5O75197 1615 aa16.96■□□□□ 0.31
ZNF540-209ENST00000590588 IQGAP3Q86VI3 1631 aa16.96■□□□□ 0.3
ZNF540-209ENST00000590588 RALGAPBQ86X10 1494 aa16.94■□□□□ 0.3
ZNF540-209ENST00000590588 ROBO2Q9HCK4 1378 aa16.94■□□□□ 0.3
ZNF540-209ENST00000590588 FOXO3O43524 673 aa16.94■□□□□ 0.3
ZNF540-209ENST00000590588 HRCP23327 699 aa16.94■□□□□ 0.3
ZNF540-209ENST00000590588 SEPT12Q8IYM1 358 aa16.94■□□□□ 0.3
ZNF540-209ENST00000590588 PSDA5PKW4 1024 aaPredicted RBP16.93■□□□□ 0.3
ZNF540-209ENST00000590588 LRPPRCP42704 1394 aaKnown RBP16.92■□□□□ 0.3
ZNF540-209ENST00000590588 VGFO15240 615 aaPredicted RBP16.91■□□□□ 0.3
ZNF540-209ENST00000590588 ONECUT3O60422 494 aaPredicted RBP16.91■□□□□ 0.3
ZNF540-209ENST00000590588 BAG6P46379 1132 aa16.91■□□□□ 0.3
ZNF540-209ENST00000590588 XPCQ01831 940 aaPredicted RBP16.91■□□□□ 0.3
ZNF540-209ENST00000590588 SLIT2O94813 1529 aa16.91■□□□□ 0.3
ZNF540-209ENST00000590588 ROCK1Q13464 1354 aa16.9■□□□□ 0.3
ZNF540-209ENST00000590588 KRT27Q7Z3Y8 459 aa16.9■□□□□ 0.3
ZNF540-209ENST00000590588 MARF1Q9Y4F3 1742 aaKnown RBP16.9■□□□□ 0.3
ZNF540-209ENST00000590588 GLI3P10071 1580 aa16.89■□□□□ 0.3
ZNF540-209ENST00000590588 HFM1A2PYH4 1435 aa16.89■□□□□ 0.29
ZNF540-209ENST00000590588 PXDNQ92626 1479 aa16.89■□□□□ 0.29
ZNF540-209ENST00000590588 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.88■□□□□ 0.29
ZNF540-209ENST00000590588 VPS72Q15906 364 aa16.88■□□□□ 0.29
ZNF540-209ENST00000590588 SPHKAPQ2M3C7 1700 aa16.87■□□□□ 0.29
ZNF540-209ENST00000590588 NEXMIFQ5QGS0 1516 aa16.87■□□□□ 0.29
ZNF540-209ENST00000590588 CCDC9Q9Y3X0 531 aaKnown RBP16.87■□□□□ 0.29
ZNF540-209ENST00000590588 PRAG1Q86YV5 1406 aa16.86■□□□□ 0.29
ZNF540-209ENST00000590588 BRWD3Q6RI45 1802 aa16.85■□□□□ 0.29
ZNF540-209ENST00000590588 SPATA31A3Q5VYP0 1347 aa16.85■□□□□ 0.29
ZNF540-209ENST00000590588 HAP1P54257 671 aaPredicted RBP16.84■□□□□ 0.29
ZNF540-209ENST00000590588 YY1P25490 414 aa16.83■□□□□ 0.28
ZNF540-209ENST00000590588 NUTM2FA1L443 756 aa16.82■□□□□ 0.28
ZNF540-209ENST00000590588 EN1Q05925 392 aaPredicted RBP16.82■□□□□ 0.28
ZNF540-209ENST00000590588 R3HDM1Q15032 1099 aaKnown RBP16.82■□□□□ 0.28
ZNF540-209ENST00000590588 RPGRIP1LQ68CZ1 1315 aa16.81■□□□□ 0.28
ZNF540-209ENST00000590588 A0A0G2JS52 829 aa16.81■□□□□ 0.28
ZNF540-209ENST00000590588 MYT1Q01538 1121 aa16.81■□□□□ 0.28
ZNF540-209ENST00000590588 KRT28Q7Z3Y7 464 aa16.81■□□□□ 0.28
ZNF540-209ENST00000590588 CDC42BPGQ6DT37 1551 aa16.79■□□□□ 0.28
ZNF540-209ENST00000590588 PSME1Q06323 249 aa16.78■□□□□ 0.28
ZNF540-209ENST00000590588 NAIPQ13075 1403 aa16.78■□□□□ 0.28
ZNF540-209ENST00000590588 CLTCL1P53675 1640 aa16.78■□□□□ 0.28
ZNF540-209ENST00000590588 ITGAEP38570 1179 aa16.77■□□□□ 0.28
ZNF540-209ENST00000590588 WAPLQ7Z5K2 1190 aa16.77■□□□□ 0.28
ZNF540-209ENST00000590588 CABLES1Q8TDN4 633 aa16.77■□□□□ 0.28
ZNF540-209ENST00000590588 CCDC144AA2RUR9 1427 aa16.77■□□□□ 0.27
ZNF540-209ENST00000590588 USP32Q8NFA0 1604 aa16.77■□□□□ 0.27
ZNF540-209ENST00000590588 FAM98CQ17RN3 349 aaKnown RBP16.76■□□□□ 0.27
ZNF540-209ENST00000590588 KIF1BO60333 1816 aa16.75■□□□□ 0.27
ZNF540-209ENST00000590588 FAM83GA6ND36 823 aa16.74■□□□□ 0.27
ZNF540-209ENST00000590588 PLEKHG5O94827 1062 aa16.74■□□□□ 0.27
ZNF540-209ENST00000590588 STK26Q9P289 416 aa16.74■□□□□ 0.27
ZNF540-209ENST00000590588 EZH2Q15910 746 aaKnown RBP16.72■□□□□ 0.27
ZNF540-209ENST00000590588 LMOD2Q6P5Q4 547 aa16.72■□□□□ 0.27
ZNF540-209ENST00000590588 NWD2Q9ULI1 1742 aa16.72■□□□□ 0.27
ZNF540-209ENST00000590588 DISP2A7MBM2 1401 aa16.71■□□□□ 0.27
ZNF540-209ENST00000590588 TNS3Q68CZ2 1445 aa16.71■□□□□ 0.27
ZNF540-209ENST00000590588 DCAF8L1A6NGE4 600 aa16.71■□□□□ 0.27
ZNF540-209ENST00000590588 FAM182BQ5T319 152 aa16.71■□□□□ 0.27
ZNF540-209ENST00000590588 PHF8Q9UPP1 1060 aa16.71■□□□□ 0.27
ZNF540-209ENST00000590588 BTG4Q9NY30 223 aa16.7■□□□□ 0.26
ZNF540-209ENST00000590588 SBNO1A3KN83 1393 aa16.69■□□□□ 0.26
ZNF540-209ENST00000590588 ARHGEF10O15013 1369 aa16.69■□□□□ 0.26
ZNF540-209ENST00000590588 CAMKK2Q96RR4 588 aa16.69■□□□□ 0.26
ZNF540-209ENST00000590588 KIF1AQ12756 1690 aa16.69■□□□□ 0.26
ZNF540-209ENST00000590588 ABCC11Q96J66 1382 aa16.68■□□□□ 0.26
ZNF540-209ENST00000590588 TECPR2O15040 1411 aa16.68■□□□□ 0.26
ZNF540-209ENST00000590588 PLCH1Q4KWH8 1693 aa16.68■□□□□ 0.26
ZNF540-209ENST00000590588 RGPD1P0DJD0 1748 aa16.67■□□□□ 0.26
ZNF540-209ENST00000590588 PLEKHH1Q9ULM0 1364 aa16.66■□□□□ 0.26
ZNF540-209ENST00000590588 ADGRF5Q8IZF2 1346 aa16.66■□□□□ 0.26
ZNF540-209ENST00000590588 NBPF8Q3BBV2 869 aa16.65■□□□□ 0.26
ZNF540-209ENST00000590588 NBPF14Q5TI25 921 aa16.65■□□□□ 0.26
ZNF540-209ENST00000590588 TMEM132EQ6IEE7 984 aa16.65■□□□□ 0.26
ZNF540-209ENST00000590588 FAM196AQ6ZSG2 479 aa16.65■□□□□ 0.26
ZNF540-209ENST00000590588 SIRT1Q96EB6 747 aa16.65■□□□□ 0.26
ZNF540-209ENST00000590588 SPATA31A5Q5VU36 1347 aa16.65■□□□□ 0.26
ZNF540-209ENST00000590588 SPATA31A7Q8IWB4 1347 aa16.65■□□□□ 0.26
ZNF540-209ENST00000590588 TRIM37O94972 964 aa16.64■□□□□ 0.25
ZNF540-209ENST00000590588 APBA3O96018 575 aa16.64■□□□□ 0.25
ZNF540-209ENST00000590588 PPP1R1BQ9UD71 204 aaPredicted RBP16.64■□□□□ 0.25
ZNF540-209ENST00000590588 PARD3Q8TEW0 1356 aa16.64■□□□□ 0.25
ZNF540-209ENST00000590588 FMN2Q9NZ56 1722 aa16.63■□□□□ 0.25
ZNF540-209ENST00000590588 PPLO60437 1756 aa16.62■□□□□ 0.25
ZNF540-209ENST00000590588 SPON1Q9HCB6 807 aa16.62■□□□□ 0.25
ZNF540-209ENST00000590588 NRXN1Q9ULB1 1477 aa16.61■□□□□ 0.25
ZNF540-209ENST00000590588 RRBP1Q9P2E9 1410 aaKnown RBP16.6■□□□□ 0.25
ZNF540-209ENST00000590588 KCNQ2O43526 872 aa16.59■□□□□ 0.25
ZNF540-209ENST00000590588 RGL3Q3MIN7 710 aa16.59■□□□□ 0.25
ZNF540-209ENST00000590588 PMFBP1Q8TBY8 1022 aa16.59■□□□□ 0.25
ZNF540-209ENST00000590588 SLC4A1APQ9BWU0 796 aaKnown RBP16.59■□□□□ 0.25
ZNF540-209ENST00000590588 NRAPQ86VF7 1730 aa16.59■□□□□ 0.25
ZNF540-209ENST00000590588 ANKRD30BQ9BXX2 1392 aa16.58■□□□□ 0.24
ZNF540-209ENST00000590588 YTHDC2Q9H6S0 1430 aaKnown RBP16.58■□□□□ 0.24
ZNF540-209ENST00000590588 ADGRB2O60241 1585 aa16.58■□□□□ 0.24
ZNF540-209ENST00000590588 TNS1Q9HBL0 1735 aaKnown RBP16.58■□□□□ 0.24
ZNF540-209ENST00000590588 ABCA3Q99758 1704 aa16.57■□□□□ 0.24
ZNF540-209ENST00000590588 NINLQ9Y2I6 1382 aa16.57■□□□□ 0.24
ZNF540-209ENST00000590588 SPATA31A1Q5TZJ5 1347 aa16.56■□□□□ 0.24
ZNF540-209ENST00000590588 COL14A1Q05707 1796 aaKnown RBP16.56■□□□□ 0.24
ZNF540-209ENST00000590588 KNDC1Q76NI1 1749 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms