RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 QTRT2Q9H974 415 aaKnown RBP15.51■□□□□ 0.07
LIG3-212ENST00000590181 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.51■□□□□ 0.07
LIG3-212ENST00000590181 ADAMTS2O95450 1211 aa15.5■□□□□ 0.07
LIG3-212ENST00000590181 STAC3Q96MF2 364 aa15.5■□□□□ 0.07
LIG3-212ENST00000590181 PRAG1Q86YV5 1406 aa15.5■□□□□ 0.07
LIG3-212ENST00000590181 ANKRD30BQ9BXX2 1392 aa15.49■□□□□ 0.07
LIG3-212ENST00000590181 NGLY1Q96IV0 654 aa15.48■□□□□ 0.07
LIG3-212ENST00000590181 ATRNO75882 1429 aa15.48■□□□□ 0.07
LIG3-212ENST00000590181 ROBO2Q9HCK4 1378 aa15.48■□□□□ 0.07
LIG3-212ENST00000590181 MYOM2P54296 1465 aa15.47■□□□□ 0.07
LIG3-212ENST00000590181 RAB3GAP2Q9H2M9 1393 aa15.46■□□□□ 0.07
LIG3-212ENST00000590181 PXDNQ92626 1479 aa15.46■□□□□ 0.06
LIG3-212ENST00000590181 KNDC1Q76NI1 1749 aa15.46■□□□□ 0.06
LIG3-212ENST00000590181 SOS2Q07890 1332 aaPredicted RBP15.44■□□□□ 0.06
LIG3-212ENST00000590181 IFT172Q9UG01 1749 aa15.44■□□□□ 0.06
LIG3-212ENST00000590181 USP21Q9UK80 565 aa15.44■□□□□ 0.06
LIG3-212ENST00000590181 KIF1AQ12756 1690 aa15.44■□□□□ 0.06
LIG3-212ENST00000590181 SPATA31E1Q6ZUB1 1445 aa15.43■□□□□ 0.06
LIG3-212ENST00000590181 ORAI2Q96SN7 254 aa15.43■□□□□ 0.06
LIG3-212ENST00000590181 TRPC5Q9UL62 973 aaPredicted RBP15.43■□□□□ 0.06
LIG3-212ENST00000590181 BRWD3Q6RI45 1802 aa15.43■□□□□ 0.06
LIG3-212ENST00000590181 FMN2Q9NZ56 1722 aa15.43■□□□□ 0.06
LIG3-212ENST00000590181 ABCA3Q99758 1704 aa15.42■□□□□ 0.06
LIG3-212ENST00000590181 PLCH1Q4KWH8 1693 aa15.41■□□□□ 0.06
LIG3-212ENST00000590181 USP32Q8NFA0 1604 aa15.41■□□□□ 0.06
LIG3-212ENST00000590181 GLI3P10071 1580 aa15.41■□□□□ 0.06
LIG3-212ENST00000590181 FOXD1Q16676 465 aa15.4■□□□□ 0.06
LIG3-212ENST00000590181 BCL9LQ86UU0 1499 aa15.39■□□□□ 0.05
LIG3-212ENST00000590181 RGL3Q3MIN7 710 aa15.38■□□□□ 0.05
LIG3-212ENST00000590181 FNBP4Q8N3X1 1017 aaPredicted RBP15.38■□□□□ 0.05
LIG3-212ENST00000590181 SIRT1Q96EB6 747 aa15.38■□□□□ 0.05
LIG3-212ENST00000590181 NPHP3Q7Z494 1330 aa15.38■□□□□ 0.05
LIG3-212ENST00000590181 ZRANB1Q9UGI0 708 aa15.37■□□□□ 0.05
LIG3-212ENST00000590181 LRP5O75197 1615 aa15.36■□□□□ 0.05
LIG3-212ENST00000590181 NWD2Q9ULI1 1742 aa15.36■□□□□ 0.05
LIG3-212ENST00000590181 RALGAPBQ86X10 1494 aa15.35■□□□□ 0.05
LIG3-212ENST00000590181 RGPD8O14715 1765 aaPredicted RBP15.35■□□□□ 0.05
LIG3-212ENST00000590181 ABCC11Q96J66 1382 aa15.35■□□□□ 0.05
LIG3-212ENST00000590181 C14orf93Q9H972 538 aaKnown RBP15.34■□□□□ 0.05
LIG3-212ENST00000590181 TECPR2O15040 1411 aa15.34■□□□□ 0.05
LIG3-212ENST00000590181 PIK3C2GO75747 1445 aa15.34■□□□□ 0.05
LIG3-212ENST00000590181 SLIT2O94813 1529 aa15.33■□□□□ 0.05
LIG3-212ENST00000590181 XPCQ01831 940 aaPredicted RBP15.33■□□□□ 0.04
LIG3-212ENST00000590181 ESCO1Q5FWF5 840 aa15.33■□□□□ 0.04
LIG3-212ENST00000590181 ADGRF5Q8IZF2 1346 aa15.33■□□□□ 0.04
LIG3-212ENST00000590181 LRPPRCP42704 1394 aaKnown RBP15.32■□□□□ 0.04
LIG3-212ENST00000590181 BLMP54132 1417 aaPredicted RBP15.32■□□□□ 0.04
LIG3-212ENST00000590181 NRXN1Q9ULB1 1477 aa15.32■□□□□ 0.04
LIG3-212ENST00000590181 DHX57Q6P158 1386 aaKnown RBP15.31■□□□□ 0.04
LIG3-212ENST00000590181 NRAPQ86VF7 1730 aa15.31■□□□□ 0.04
LIG3-212ENST00000590181 CCDC125Q86Z20 511 aa15.3■□□□□ 0.04
LIG3-212ENST00000590181 GJD4Q96KN9 370 aaPredicted RBP15.29■□□□□ 0.04
LIG3-212ENST00000590181 TNS3Q68CZ2 1445 aa15.28■□□□□ 0.04
LIG3-212ENST00000590181 FOXO3O43524 673 aa15.28■□□□□ 0.04
LIG3-212ENST00000590181 RGPD1P0DJD0 1748 aa15.27■□□□□ 0.04
LIG3-212ENST00000590181 NUTM2FA1L443 756 aa15.27■□□□□ 0.04
LIG3-212ENST00000590181 YTHDC2Q9H6S0 1430 aaKnown RBP15.26■□□□□ 0.03
LIG3-212ENST00000590181 PLEKHH1Q9ULM0 1364 aa15.26■□□□□ 0.03
LIG3-212ENST00000590181 UNC5CLQ8IV45 518 aa15.25■□□□□ 0.03
LIG3-212ENST00000590181 STK26Q9P289 416 aa15.25■□□□□ 0.03
LIG3-212ENST00000590181 SPATA31A3Q5VYP0 1347 aa15.24■□□□□ 0.03
LIG3-212ENST00000590181 TRPM3Q9HCF6 1732 aaPredicted RBP15.24■□□□□ 0.03
LIG3-212ENST00000590181 DCAF11Q8TEB1 546 aa15.23■□□□□ 0.03
LIG3-212ENST00000590181 TNS1Q9HBL0 1735 aaKnown RBP15.23■□□□□ 0.03
LIG3-212ENST00000590181 CRYBG1Q9Y4K1 1723 aa15.23■□□□□ 0.03
LIG3-212ENST00000590181 WAPLQ7Z5K2 1190 aa15.22■□□□□ 0.03
LIG3-212ENST00000590181 ADGRB2O60241 1585 aa15.22■□□□□ 0.03
LIG3-212ENST00000590181 DLC1Q96QB1 1528 aa15.22■□□□□ 0.03
LIG3-212ENST00000590181 ALS2Q96Q42 1657 aa15.22■□□□□ 0.03
LIG3-212ENST00000590181 COL14A1Q05707 1796 aaKnown RBP15.21■□□□□ 0.03
LIG3-212ENST00000590181 HAP1P54257 671 aaPredicted RBP15.21■□□□□ 0.03
LIG3-212ENST00000590181 SF3B2Q13435 895 aaKnown RBP15.21■□□□□ 0.03
LIG3-212ENST00000590181 CFAP70Q5T0N1 1121 aa15.21■□□□□ 0.03
LIG3-212ENST00000590181 TMEM132EQ6IEE7 984 aa15.21■□□□□ 0.03
LIG3-212ENST00000590181 DEFB132Q7Z7B7 95 aa15.21■□□□□ 0.03
LIG3-212ENST00000590181 SEPT12Q8IYM1 358 aa15.19■□□□□ 0.02
LIG3-212ENST00000590181 EIF3AQ14152 1382 aaKnown RBP15.19■□□□□ 0.02
LIG3-212ENST00000590181 VPS72Q15906 364 aa15.18■□□□□ 0.02
LIG3-212ENST00000590181 KRT28Q7Z3Y7 464 aa15.18■□□□□ 0.02
LIG3-212ENST00000590181 ARHGEF10O15013 1369 aa15.18■□□□□ 0.02
LIG3-212ENST00000590181 THSD7AQ9UPZ6 1657 aa15.18■□□□□ 0.02
LIG3-212ENST00000590181 KIAA1210Q9ULL0 1709 aa15.17■□□□□ 0.02
LIG3-212ENST00000590181 SBNO1A3KN83 1393 aa15.17■□□□□ 0.02
LIG3-212ENST00000590181 PLEKHG5O94827 1062 aa15.17■□□□□ 0.02
LIG3-212ENST00000590181 POGKQ9P215 609 aa15.17■□□□□ 0.02
LIG3-212ENST00000590181 KDM2AQ9Y2K7 1162 aa15.17■□□□□ 0.02
LIG3-212ENST00000590181 CCDC9Q9Y3X0 531 aaKnown RBP15.17■□□□□ 0.02
LIG3-212ENST00000590181 CABLES1Q8TDN4 633 aa15.16■□□□□ 0.02
LIG3-212ENST00000590181 ITSN1Q15811 1721 aa15.16■□□□□ 0.02
LIG3-212ENST00000590181 A0A0G2JS52 829 aa15.15■□□□□ 0.02
LIG3-212ENST00000590181 MYT1Q01538 1121 aa15.15■□□□□ 0.02
LIG3-212ENST00000590181 TRIM26Q12899 539 aaPredicted RBP15.15■□□□□ 0.02
LIG3-212ENST00000590181 KRT27Q7Z3Y8 459 aa15.15■□□□□ 0.02
LIG3-212ENST00000590181 PHF8Q9UPP1 1060 aa15.15■□□□□ 0.02
LIG3-212ENST00000590181 ANKARQ7Z5J8 1434 aa15.15■□□□□ 0.02
LIG3-212ENST00000590181 ADGRB1O14514 1584 aa15.15■□□□□ 0.02
LIG3-212ENST00000590181 PHRF1Q9P1Y6 1649 aaKnown RBP15.14■□□□□ 0.01
LIG3-212ENST00000590181 PSME1Q06323 249 aa15.14■□□□□ 0.01
LIG3-212ENST00000590181 PRAM1Q96QH2 718 aa15.14■□□□□ 0.01
LIG3-212ENST00000590181 LMOD2Q6P5Q4 547 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms