RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 NCOA3Q9Y6Q9 1424 aa21.31■■□□□ 1
ATG4D-211ENST00000589753 HIRIP3Q9BW71 556 aaPredicted RBP21.31■■□□□ 1
ATG4D-211ENST00000589753 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.31■■□□□ 1
ATG4D-211ENST00000589753 SBNO2Q9Y2G9 1366 aa21.31■■□□□ 1
ATG4D-211ENST00000589753 MINK1Q8N4C8 1332 aaPredicted RBP21.3■■□□□ 1
ATG4D-211ENST00000589753 C14orf37Q86TY3 774 aa21.3■■□□□ 1
ATG4D-211ENST00000589753 TESK2Q96S53 571 aa21.29■■□□□ 1
ATG4D-211ENST00000589753 ADGRL3Q9HAR2 1447 aa21.29■■□□□ 1
ATG4D-211ENST00000589753 SLC24A1O60721 1099 aa21.28■■□□□ 1
ATG4D-211ENST00000589753 NALCNQ8IZF0 1738 aa21.28■■□□□ 1
ATG4D-211ENST00000589753 XIRP1Q702N8 1843 aaKnown RBP21.27■■□□□ 1
ATG4D-211ENST00000589753 ADGRB2O60241 1585 aa21.27■□□□□ 0.99
ATG4D-211ENST00000589753 TMF1P82094 1093 aa21.24■□□□□ 0.99
ATG4D-211ENST00000589753 C19orf44Q9H6X5 657 aa21.24■□□□□ 0.99
ATG4D-211ENST00000589753 EVC2Q86UK5 1308 aa21.24■□□□□ 0.99
ATG4D-211ENST00000589753 TULP4Q9NRJ4 1543 aa21.23■□□□□ 0.99
ATG4D-211ENST00000589753 CDC42BPGQ6DT37 1551 aa21.23■□□□□ 0.99
ATG4D-211ENST00000589753 MSH6P52701 1360 aa21.23■□□□□ 0.99
ATG4D-211ENST00000589753 WASLO00401 505 aaPredicted RBP21.22■□□□□ 0.99
ATG4D-211ENST00000589753 DISP3Q9P2K9 1392 aa21.21■□□□□ 0.99
ATG4D-211ENST00000589753 DCCP43146 1447 aa21.21■□□□□ 0.99
ATG4D-211ENST00000589753 CDK19Q9BWU1 502 aa21.2■□□□□ 0.98
ATG4D-211ENST00000589753 ATF3P18847 181 aa21.18■□□□□ 0.98
ATG4D-211ENST00000589753 SRPK2P78362 688 aaKnown RBP21.18■□□□□ 0.98
ATG4D-211ENST00000589753 CDCA8Q53HL2 280 aa21.18■□□□□ 0.98
ATG4D-211ENST00000589753 CABP2Q9NPB3 220 aa21.17■□□□□ 0.98
ATG4D-211ENST00000589753 FMN2Q9NZ56 1722 aa21.17■□□□□ 0.98
ATG4D-211ENST00000589753 C11orf95C9JLR9 678 aaPredicted RBP21.16■□□□□ 0.98
ATG4D-211ENST00000589753 CADPS2Q86UW7 1296 aa21.16■□□□□ 0.98
ATG4D-211ENST00000589753 IQSEC2Q5JU85 1478 aa21.15■□□□□ 0.98
ATG4D-211ENST00000589753 PUS7Q96PZ0 661 aaKnown RBP21.15■□□□□ 0.98
ATG4D-211ENST00000589753 CERKQ8TCT0 537 aa21.14■□□□□ 0.97
ATG4D-211ENST00000589753 NUTM2FA1L443 756 aa21.13■□□□□ 0.97
ATG4D-211ENST00000589753 ANKARQ7Z5J8 1434 aa21.12■□□□□ 0.97
ATG4D-211ENST00000589753 ATAD2Q6PL18 1390 aa21.12■□□□□ 0.97
ATG4D-211ENST00000589753 KIF7Q2M1P5 1343 aa21.12■□□□□ 0.97
ATG4D-211ENST00000589753 ZNF316A6NFI3 1004 aaPredicted RBP21.12■□□□□ 0.97
ATG4D-211ENST00000589753 NUDT16Q96DE0 195 aaKnown RBP21.12■□□□□ 0.97
ATG4D-211ENST00000589753 POLR3GLQ9BT43 218 aa21.12■□□□□ 0.97
ATG4D-211ENST00000589753 ATP7BP35670 1465 aa21.12■□□□□ 0.97
ATG4D-211ENST00000589753 MST1RQ04912 1400 aa21.12■□□□□ 0.97
ATG4D-211ENST00000589753 USP32Q8NFA0 1604 aa21.11■□□□□ 0.97
ATG4D-211ENST00000589753 PRR36Q9H6K5 1346 aa21.11■□□□□ 0.97
ATG4D-211ENST00000589753 CCDC7Q96M83 1385 aa21.1■□□□□ 0.97
ATG4D-211ENST00000589753 WASHC2AQ641Q2 1341 aa21.1■□□□□ 0.97
ATG4D-211ENST00000589753 C1orf167Q5SNV9 1468 aa21.08■□□□□ 0.97
ATG4D-211ENST00000589753 CCDC61Q9Y6R9 512 aa21.08■□□□□ 0.97
ATG4D-211ENST00000589753 ITSN1Q15811 1721 aa21.07■□□□□ 0.96
ATG4D-211ENST00000589753 SLAIN2Q9P270 581 aa21.07■□□□□ 0.96
ATG4D-211ENST00000589753 TOPAZ1Q8N9V7 1692 aa21.07■□□□□ 0.96
ATG4D-211ENST00000589753 RGPD8O14715 1765 aaPredicted RBP21.07■□□□□ 0.96
ATG4D-211ENST00000589753 PPIP5K1Q6PFW1 1433 aa21.06■□□□□ 0.96
ATG4D-211ENST00000589753 ESCO1Q5FWF5 840 aa21.05■□□□□ 0.96
ATG4D-211ENST00000589753 TMC1Q8TDI8 760 aa21.05■□□□□ 0.96
ATG4D-211ENST00000589753 TOM1O60784 492 aa21.04■□□□□ 0.96
ATG4D-211ENST00000589753 CABP1Q9NZU7 370 aa21.04■□□□□ 0.96
ATG4D-211ENST00000589753 NINLQ9Y2I6 1382 aa21.04■□□□□ 0.96
ATG4D-211ENST00000589753 MYOM1P52179 1685 aa21.03■□□□□ 0.96
ATG4D-211ENST00000589753 ORAI2Q96SN7 254 aa21.03■□□□□ 0.96
ATG4D-211ENST00000589753 UBAP1LF5GYI3 381 aa21.02■□□□□ 0.96
ATG4D-211ENST00000589753 SLC12A5Q9H2X9 1139 aa21.02■□□□□ 0.96
ATG4D-211ENST00000589753 PHF8Q9UPP1 1060 aa21.02■□□□□ 0.96
ATG4D-211ENST00000589753 PLEKHG3A1L390 1219 aa21.01■□□□□ 0.95
ATG4D-211ENST00000589753 KIF1AQ12756 1690 aa21■□□□□ 0.95
ATG4D-211ENST00000589753 PMFBP1Q8TBY8 1022 aa21■□□□□ 0.95
ATG4D-211ENST00000589753 BRINP3Q76B58 766 aa20.99■□□□□ 0.95
ATG4D-211ENST00000589753 ACEP12821 1306 aa20.98■□□□□ 0.95
ATG4D-211ENST00000589753 NGDNQ8NEJ9 315 aaKnown RBP20.97■□□□□ 0.95
ATG4D-211ENST00000589753 TERF2IPQ9NYB0 399 aa20.97■□□□□ 0.95
ATG4D-211ENST00000589753 POLR3AO14802 1390 aaPredicted RBP20.97■□□□□ 0.95
ATG4D-211ENST00000589753 CD163L1Q9NR16 1453 aa20.96■□□□□ 0.95
ATG4D-211ENST00000589753 HDGFL2Q7Z4V5 671 aaPredicted RBP20.96■□□□□ 0.95
ATG4D-211ENST00000589753 ANKRD36BQ8N2N9 1353 aa20.96■□□□□ 0.95
ATG4D-211ENST00000589753 ROBO1Q9Y6N7 1651 aa20.96■□□□□ 0.95
ATG4D-211ENST00000589753 PIP4K2BP78356 416 aa20.95■□□□□ 0.94
ATG4D-211ENST00000589753 A0A1W2PP64 1363 aa20.95■□□□□ 0.94
ATG4D-211ENST00000589753 CPSF1Q10570 1443 aaKnown RBP20.95■□□□□ 0.94
ATG4D-211ENST00000589753 ZNF692Q9BU19 519 aaPredicted RBP20.94■□□□□ 0.94
ATG4D-211ENST00000589753 PANK3Q9H999 370 aa20.94■□□□□ 0.94
ATG4D-211ENST00000589753 AKAP12Q02952 1782 aa20.93■□□□□ 0.94
ATG4D-211ENST00000589753 FOXO3O43524 673 aa20.93■□□□□ 0.94
ATG4D-211ENST00000589753 SCAF1Q9H7N4 1312 aaKnown RBP20.93■□□□□ 0.94
ATG4D-211ENST00000589753 DDX10Q13206 875 aaKnown RBP20.92■□□□□ 0.94
ATG4D-211ENST00000589753 NPHP3Q7Z494 1330 aa20.92■□□□□ 0.94
ATG4D-211ENST00000589753 KTN1Q86UP2 1357 aaKnown RBP20.92■□□□□ 0.94
ATG4D-211ENST00000589753 PSME1Q06323 249 aa20.91■□□□□ 0.94
ATG4D-211ENST00000589753 USP6P35125 1406 aa20.9■□□□□ 0.94
ATG4D-211ENST00000589753 MON2Q7Z3U7 1717 aa20.9■□□□□ 0.94
ATG4D-211ENST00000589753 NHSL1Q5SYE7 1610 aa20.89■□□□□ 0.94
ATG4D-211ENST00000589753 DDX17Q92841 729 aaKnown RBP20.89■□□□□ 0.93
ATG4D-211ENST00000589753 KRT28Q7Z3Y7 464 aa20.88■□□□□ 0.93
ATG4D-211ENST00000589753 XPCQ01831 940 aaPredicted RBP20.87■□□□□ 0.93
ATG4D-211ENST00000589753 CARD14Q9BXL6 1004 aa20.87■□□□□ 0.93
ATG4D-211ENST00000589753 EDC4Q6P2E9 1401 aaKnown RBP20.87■□□□□ 0.93
ATG4D-211ENST00000589753 NSD3Q9BZ95 1437 aa20.87■□□□□ 0.93
ATG4D-211ENST00000589753 BRD4O60885 1362 aaPredicted RBP20.86■□□□□ 0.93
ATG4D-211ENST00000589753 AHDC1Q5TGY3 1603 aaPredicted RBP20.86■□□□□ 0.93
ATG4D-211ENST00000589753 FBXO41Q8TF61 875 aa20.86■□□□□ 0.93
ATG4D-211ENST00000589753 PXDNQ92626 1479 aa20.86■□□□□ 0.93
ATG4D-211ENST00000589753 NRKQ7Z2Y5 1582 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms