RNA–Protein interactions for RNA: ENST00000589007.5

RETREG3-207, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 3

Gene RETREG3, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-207ENST00000589007 TRPC5Q9UL62 973 aaPredicted RBP13.37□□□□□ -0.27
RETREG3-207ENST00000589007 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.36□□□□□ -0.27
RETREG3-207ENST00000589007 NWD2Q9ULI1 1742 aa13.36□□□□□ -0.27
RETREG3-207ENST00000589007 CHIC2Q9UKJ5 165 aa13.34□□□□□ -0.27
RETREG3-207ENST00000589007 DEFB132Q7Z7B7 95 aa13.33□□□□□ -0.28
RETREG3-207ENST00000589007 CCDC125Q86Z20 511 aa13.33□□□□□ -0.28
RETREG3-207ENST00000589007 RGPD1P0DJD0 1748 aa13.33□□□□□ -0.28
RETREG3-207ENST00000589007 ROBO2Q9HCK4 1378 aa13.32□□□□□ -0.28
RETREG3-207ENST00000589007 PPLO60437 1756 aa13.31□□□□□ -0.28
RETREG3-207ENST00000589007 ORAI2Q96SN7 254 aa13.31□□□□□ -0.28
RETREG3-207ENST00000589007 RREB1Q92766 1687 aa13.31□□□□□ -0.28
RETREG3-207ENST00000589007 FMN2Q9NZ56 1722 aa13.3□□□□□ -0.28
RETREG3-207ENST00000589007 KIF1BO60333 1816 aa13.29□□□□□ -0.28
RETREG3-207ENST00000589007 CRYBG1Q9Y4K1 1723 aa13.29□□□□□ -0.28
RETREG3-207ENST00000589007 THSD7AQ9UPZ6 1657 aa13.28□□□□□ -0.28
RETREG3-207ENST00000589007 KNDC1Q76NI1 1749 aa13.28□□□□□ -0.28
RETREG3-207ENST00000589007 HDGFP51858 240 aaKnown RBP13.28□□□□□ -0.28
RETREG3-207ENST00000589007 GJD4Q96KN9 370 aaPredicted RBP13.28□□□□□ -0.28
RETREG3-207ENST00000589007 RGPD8O14715 1765 aaPredicted RBP13.27□□□□□ -0.28
RETREG3-207ENST00000589007 KIF1AQ12756 1690 aa13.27□□□□□ -0.29
RETREG3-207ENST00000589007 NUP188Q5SRE5 1749 aa13.27□□□□□ -0.29
RETREG3-207ENST00000589007 HRCP23327 699 aa13.26□□□□□ -0.29
RETREG3-207ENST00000589007 IFT172Q9UG01 1749 aa13.25□□□□□ -0.29
RETREG3-207ENST00000589007 CHGAP10645 457 aaKnown RBP13.25□□□□□ -0.29
RETREG3-207ENST00000589007 DISP2A7MBM2 1401 aa13.24□□□□□ -0.29
RETREG3-207ENST00000589007 CAMTA1Q9Y6Y1 1673 aa13.23□□□□□ -0.29
RETREG3-207ENST00000589007 TRPM3Q9HCF6 1732 aaPredicted RBP13.22□□□□□ -0.29
RETREG3-207ENST00000589007 UTRNP46939 3433 aa13.22□□□□□ -0.29
RETREG3-207ENST00000589007 PSDA5PKW4 1024 aaPredicted RBP13.22□□□□□ -0.29
RETREG3-207ENST00000589007 FOXD1Q16676 465 aa13.22□□□□□ -0.29
RETREG3-207ENST00000589007 ROCK1Q13464 1354 aa13.21□□□□□ -0.29
RETREG3-207ENST00000589007 HFM1A2PYH4 1435 aa13.21□□□□□ -0.3
RETREG3-207ENST00000589007 ONECUT3O60422 494 aaPredicted RBP13.2□□□□□ -0.3
RETREG3-207ENST00000589007 ALS2Q96Q42 1657 aa13.19□□□□□ -0.3
RETREG3-207ENST00000589007 UNC5CLQ8IV45 518 aa13.19□□□□□ -0.3
RETREG3-207ENST00000589007 TECPR2O15040 1411 aa13.19□□□□□ -0.3
RETREG3-207ENST00000589007 NAIPQ13075 1403 aa13.18□□□□□ -0.3
RETREG3-207ENST00000589007 NPHP3Q7Z494 1330 aa13.17□□□□□ -0.3
RETREG3-207ENST00000589007 SEPT12Q8IYM1 358 aa13.17□□□□□ -0.3
RETREG3-207ENST00000589007 XPCQ01831 940 aaPredicted RBP13.16□□□□□ -0.3
RETREG3-207ENST00000589007 NUP155O75694 1391 aa13.15□□□□□ -0.3
RETREG3-207ENST00000589007 ADGRB2O60241 1585 aa13.15□□□□□ -0.3
RETREG3-207ENST00000589007 COL14A1Q05707 1796 aaKnown RBP13.15□□□□□ -0.31
RETREG3-207ENST00000589007 CASZ1Q86V15 1759 aa13.15□□□□□ -0.31
RETREG3-207ENST00000589007 SPATA31A3Q5VYP0 1347 aa13.14□□□□□ -0.31
RETREG3-207ENST00000589007 TNS3Q68CZ2 1445 aa13.14□□□□□ -0.31
RETREG3-207ENST00000589007 VPS72Q15906 364 aa13.14□□□□□ -0.31
RETREG3-207ENST00000589007 CCDC144AA2RUR9 1427 aa13.13□□□□□ -0.31
RETREG3-207ENST00000589007 PLEKHH1Q9ULM0 1364 aa13.12□□□□□ -0.31
RETREG3-207ENST00000589007 FOXO3O43524 673 aa13.11□□□□□ -0.31
RETREG3-207ENST00000589007 KRT27Q7Z3Y8 459 aa13.11□□□□□ -0.31
RETREG3-207ENST00000589007 NRXN1Q9ULB1 1477 aa13.1□□□□□ -0.31
RETREG3-207ENST00000589007 RGPD3A6NKT7 1758 aaPredicted RBP13.1□□□□□ -0.31
RETREG3-207ENST00000589007 RGPD4Q7Z3J3 1758 aa13.1□□□□□ -0.31
RETREG3-207ENST00000589007 LOC105371045A0A1W2PR82 267 aa13.09□□□□□ -0.31
RETREG3-207ENST00000589007 EN1Q05925 392 aaPredicted RBP13.09□□□□□ -0.31
RETREG3-207ENST00000589007 R3HDM1Q15032 1099 aaKnown RBP13.09□□□□□ -0.31
RETREG3-207ENST00000589007 PHRF1Q9P1Y6 1649 aaKnown RBP13.09□□□□□ -0.31
RETREG3-207ENST00000589007 ESCO1Q5FWF5 840 aa13.08□□□□□ -0.32
RETREG3-207ENST00000589007 BAG6P46379 1132 aa13.07□□□□□ -0.32
RETREG3-207ENST00000589007 MYOM1P52179 1685 aa13.07□□□□□ -0.32
RETREG3-207ENST00000589007 PEAK1Q9H792 1746 aa13.07□□□□□ -0.32
RETREG3-207ENST00000589007 YY1P25490 414 aa13.06□□□□□ -0.32
RETREG3-207ENST00000589007 FAM50AQ14320 339 aaKnown RBP13.06□□□□□ -0.32
RETREG3-207ENST00000589007 ZNF326Q5BKZ1 582 aaKnown RBP13.06□□□□□ -0.32
RETREG3-207ENST00000589007 NRKQ7Z2Y5 1582 aa13.06□□□□□ -0.32
RETREG3-207ENST00000589007 SBF2Q86WG5 1849 aa13.05□□□□□ -0.32
RETREG3-207ENST00000589007 FAM182BQ5T319 152 aa13.05□□□□□ -0.32
RETREG3-207ENST00000589007 CABLES1Q8TDN4 633 aa13.05□□□□□ -0.32
RETREG3-207ENST00000589007 CAMKK2Q96RR4 588 aa13.05□□□□□ -0.32
RETREG3-207ENST00000589007 SBNO1A3KN83 1393 aa13.05□□□□□ -0.32
RETREG3-207ENST00000589007 LRPPRCP42704 1394 aaKnown RBP13.05□□□□□ -0.32
RETREG3-207ENST00000589007 CEP350Q5VT06 3117 aa13.04□□□□□ -0.32
RETREG3-207ENST00000589007 SF3B2Q13435 895 aaKnown RBP13.04□□□□□ -0.32
RETREG3-207ENST00000589007 EZH2Q15910 746 aaKnown RBP13.04□□□□□ -0.32
RETREG3-207ENST00000589007 RRBP1Q9P2E9 1410 aaKnown RBP13.04□□□□□ -0.32
RETREG3-207ENST00000589007 CHD4Q14839 1912 aa13.03□□□□□ -0.32
RETREG3-207ENST00000589007 PIK3C2GO75747 1445 aa13.03□□□□□ -0.32
RETREG3-207ENST00000589007 LMO7Q8WWI1 1683 aa13.02□□□□□ -0.32
RETREG3-207ENST00000589007 FAM83GA6ND36 823 aa13.02□□□□□ -0.33
RETREG3-207ENST00000589007 SPATA31E1Q6ZUB1 1445 aa13.02□□□□□ -0.33
RETREG3-207ENST00000589007 PARP4Q9UKK3 1724 aaKnown RBP13.02□□□□□ -0.33
RETREG3-207ENST00000589007 NUTM2FA1L443 756 aa13.01□□□□□ -0.33
RETREG3-207ENST00000589007 FAM98CQ17RN3 349 aaKnown RBP13.01□□□□□ -0.33
RETREG3-207ENST00000589007 WAPLQ7Z5K2 1190 aa13.01□□□□□ -0.33
RETREG3-207ENST00000589007 ABCC11Q96J66 1382 aa13.01□□□□□ -0.33
RETREG3-207ENST00000589007 WNK3Q9BYP7 1800 aa13.01□□□□□ -0.33
RETREG3-207ENST00000589007 PARD3Q8TEW0 1356 aa13□□□□□ -0.33
RETREG3-207ENST00000589007 NINLQ9Y2I6 1382 aa13□□□□□ -0.33
RETREG3-207ENST00000589007 SPATA31A5Q5VU36 1347 aa13□□□□□ -0.33
RETREG3-207ENST00000589007 SPATA31A7Q8IWB4 1347 aa13□□□□□ -0.33
RETREG3-207ENST00000589007 ADGRF5Q8IZF2 1346 aa12.99□□□□□ -0.33
RETREG3-207ENST00000589007 KRT28Q7Z3Y7 464 aa12.99□□□□□ -0.33
RETREG3-207ENST00000589007 YTHDC2Q9H6S0 1430 aaKnown RBP12.98□□□□□ -0.33
RETREG3-207ENST00000589007 ARHGEF10O15013 1369 aa12.97□□□□□ -0.33
RETREG3-207ENST00000589007 VGFO15240 615 aaPredicted RBP12.97□□□□□ -0.33
RETREG3-207ENST00000589007 LRRC37A3O60309 1634 aa12.97□□□□□ -0.33
RETREG3-207ENST00000589007 RPGRIP1LQ68CZ1 1315 aa12.96□□□□□ -0.33
RETREG3-207ENST00000589007 TOPAZ1Q8N9V7 1692 aa12.96□□□□□ -0.34
RETREG3-207ENST00000589007 DLC1Q96QB1 1528 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms