RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 PPLO60437 1756 aa16.89■□□□□ 0.29
VPS4B-202ENST00000588059 HFM1A2PYH4 1435 aa16.88■□□□□ 0.29
VPS4B-202ENST00000588059 BCL9LQ86UU0 1499 aa16.88■□□□□ 0.29
VPS4B-202ENST00000588059 PXDNQ92626 1479 aa16.88■□□□□ 0.29
VPS4B-202ENST00000588059 ZRANB1Q9UGI0 708 aa16.87■□□□□ 0.29
VPS4B-202ENST00000588059 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.87■□□□□ 0.29
VPS4B-202ENST00000588059 VGFO15240 615 aaPredicted RBP16.85■□□□□ 0.29
VPS4B-202ENST00000588059 FOXD1Q16676 465 aa16.84■□□□□ 0.29
VPS4B-202ENST00000588059 NPHP3Q7Z494 1330 aa16.84■□□□□ 0.29
VPS4B-202ENST00000588059 GLI3P10071 1580 aa16.82■□□□□ 0.28
VPS4B-202ENST00000588059 NAIPQ13075 1403 aa16.82■□□□□ 0.28
VPS4B-202ENST00000588059 CCDC125Q86Z20 511 aa16.82■□□□□ 0.28
VPS4B-202ENST00000588059 RPGRIP1LQ68CZ1 1315 aa16.81■□□□□ 0.28
VPS4B-202ENST00000588059 ESCO1Q5FWF5 840 aa16.81■□□□□ 0.28
VPS4B-202ENST00000588059 BRWD3Q6RI45 1802 aa16.8■□□□□ 0.28
VPS4B-202ENST00000588059 XPCQ01831 940 aaPredicted RBP16.8■□□□□ 0.28
VPS4B-202ENST00000588059 GJD4Q96KN9 370 aaPredicted RBP16.8■□□□□ 0.28
VPS4B-202ENST00000588059 SLIT2O94813 1529 aa16.79■□□□□ 0.28
VPS4B-202ENST00000588059 RALGAPBQ86X10 1494 aa16.79■□□□□ 0.28
VPS4B-202ENST00000588059 FOXO3O43524 673 aa16.78■□□□□ 0.28
VPS4B-202ENST00000588059 FMN2Q9NZ56 1722 aa16.78■□□□□ 0.28
VPS4B-202ENST00000588059 USP32Q8NFA0 1604 aa16.78■□□□□ 0.28
VPS4B-202ENST00000588059 KNDC1Q76NI1 1749 aa16.77■□□□□ 0.28
VPS4B-202ENST00000588059 PPARGC1BQ86YN6 1023 aaKnown RBP16.77■□□□□ 0.28
VPS4B-202ENST00000588059 KIF1AQ12756 1690 aa16.77■□□□□ 0.28
VPS4B-202ENST00000588059 TECPR2O15040 1411 aa16.77■□□□□ 0.27
VPS4B-202ENST00000588059 BLMP54132 1417 aaPredicted RBP16.77■□□□□ 0.27
VPS4B-202ENST00000588059 RRBP1Q9P2E9 1410 aaKnown RBP16.76■□□□□ 0.27
VPS4B-202ENST00000588059 IFT172Q9UG01 1749 aa16.76■□□□□ 0.27
VPS4B-202ENST00000588059 LRPPRCP42704 1394 aaKnown RBP16.76■□□□□ 0.27
VPS4B-202ENST00000588059 UNC5CLQ8IV45 518 aa16.74■□□□□ 0.27
VPS4B-202ENST00000588059 PLCH1Q4KWH8 1693 aa16.73■□□□□ 0.27
VPS4B-202ENST00000588059 NUTM2FA1L443 756 aa16.73■□□□□ 0.27
VPS4B-202ENST00000588059 LRP5O75197 1615 aa16.73■□□□□ 0.27
VPS4B-202ENST00000588059 SPATA31A3Q5VYP0 1347 aa16.72■□□□□ 0.27
VPS4B-202ENST00000588059 ADGRF5Q8IZF2 1346 aa16.72■□□□□ 0.27
VPS4B-202ENST00000588059 CCDC144AA2RUR9 1427 aa16.72■□□□□ 0.27
VPS4B-202ENST00000588059 WAPLQ7Z5K2 1190 aa16.72■□□□□ 0.27
VPS4B-202ENST00000588059 ABCA3Q99758 1704 aa16.72■□□□□ 0.27
VPS4B-202ENST00000588059 NWD2Q9ULI1 1742 aa16.72■□□□□ 0.27
VPS4B-202ENST00000588059 PLEKHH1Q9ULM0 1364 aa16.72■□□□□ 0.27
VPS4B-202ENST00000588059 RGPD8O14715 1765 aaPredicted RBP16.72■□□□□ 0.27
VPS4B-202ENST00000588059 DEFB132Q7Z7B7 95 aa16.71■□□□□ 0.27
VPS4B-202ENST00000588059 ABCC11Q96J66 1382 aa16.7■□□□□ 0.26
VPS4B-202ENST00000588059 SLC4A1APQ9BWU0 796 aaKnown RBP16.7■□□□□ 0.26
VPS4B-202ENST00000588059 STK26Q9P289 416 aa16.7■□□□□ 0.26
VPS4B-202ENST00000588059 SPATA31E1Q6ZUB1 1445 aa16.69■□□□□ 0.26
VPS4B-202ENST00000588059 TNS3Q68CZ2 1445 aa16.68■□□□□ 0.26
VPS4B-202ENST00000588059 SEPT12Q8IYM1 358 aa16.67■□□□□ 0.26
VPS4B-202ENST00000588059 PIK3C2GO75747 1445 aa16.67■□□□□ 0.26
VPS4B-202ENST00000588059 ANKRD30BQ9BXX2 1392 aa16.66■□□□□ 0.26
VPS4B-202ENST00000588059 VPS72Q15906 364 aa16.66■□□□□ 0.26
VPS4B-202ENST00000588059 TMEM132EQ6IEE7 984 aa16.66■□□□□ 0.26
VPS4B-202ENST00000588059 KRT28Q7Z3Y7 464 aa16.66■□□□□ 0.26
VPS4B-202ENST00000588059 YTHDC2Q9H6S0 1430 aaKnown RBP16.66■□□□□ 0.26
VPS4B-202ENST00000588059 SF3B2Q13435 895 aaKnown RBP16.65■□□□□ 0.26
VPS4B-202ENST00000588059 NRAPQ86VF7 1730 aa16.65■□□□□ 0.26
VPS4B-202ENST00000588059 NRXN1Q9ULB1 1477 aa16.63■□□□□ 0.25
VPS4B-202ENST00000588059 ONECUT3O60422 494 aaPredicted RBP16.63■□□□□ 0.25
VPS4B-202ENST00000588059 HAP1P54257 671 aaPredicted RBP16.63■□□□□ 0.25
VPS4B-202ENST00000588059 RGL3Q3MIN7 710 aa16.63■□□□□ 0.25
VPS4B-202ENST00000588059 CABLES1Q8TDN4 633 aa16.63■□□□□ 0.25
VPS4B-202ENST00000588059 PHF8Q9UPP1 1060 aa16.62■□□□□ 0.25
VPS4B-202ENST00000588059 SBNO1A3KN83 1393 aa16.62■□□□□ 0.25
VPS4B-202ENST00000588059 KRT27Q7Z3Y8 459 aa16.61■□□□□ 0.25
VPS4B-202ENST00000588059 CCDC9Q9Y3X0 531 aaKnown RBP16.61■□□□□ 0.25
VPS4B-202ENST00000588059 ARHGEF10O15013 1369 aa16.6■□□□□ 0.25
VPS4B-202ENST00000588059 TRPM3Q9HCF6 1732 aaPredicted RBP16.59■□□□□ 0.25
VPS4B-202ENST00000588059 PLEKHG5O94827 1062 aa16.59■□□□□ 0.25
VPS4B-202ENST00000588059 PSME1Q06323 249 aa16.59■□□□□ 0.25
VPS4B-202ENST00000588059 SIRT1Q96EB6 747 aa16.59■□□□□ 0.25
VPS4B-202ENST00000588059 RGPD1P0DJD0 1748 aa16.59■□□□□ 0.25
VPS4B-202ENST00000588059 ALS2Q96Q42 1657 aa16.57■□□□□ 0.24
VPS4B-202ENST00000588059 PSDA5PKW4 1024 aaPredicted RBP16.57■□□□□ 0.24
VPS4B-202ENST00000588059 FAM83GA6ND36 823 aa16.57■□□□□ 0.24
VPS4B-202ENST00000588059 BAG6P46379 1132 aa16.57■□□□□ 0.24
VPS4B-202ENST00000588059 COL14A1Q05707 1796 aaKnown RBP16.56■□□□□ 0.24
VPS4B-202ENST00000588059 ADGRB2O60241 1585 aa16.56■□□□□ 0.24
VPS4B-202ENST00000588059 HRCP23327 699 aa16.56■□□□□ 0.24
VPS4B-202ENST00000588059 LMOD2Q6P5Q4 547 aa16.56■□□□□ 0.24
VPS4B-202ENST00000588059 TNS1Q9HBL0 1735 aaKnown RBP16.56■□□□□ 0.24
VPS4B-202ENST00000588059 ANKARQ7Z5J8 1434 aa16.55■□□□□ 0.24
VPS4B-202ENST00000588059 A0A0G2JS52 829 aa16.55■□□□□ 0.24
VPS4B-202ENST00000588059 MYT1Q01538 1121 aa16.55■□□□□ 0.24
VPS4B-202ENST00000588059 C14orf93Q9H972 538 aaKnown RBP16.55■□□□□ 0.24
VPS4B-202ENST00000588059 CRYBG1Q9Y4K1 1723 aa16.55■□□□□ 0.24
VPS4B-202ENST00000588059 THSD7AQ9UPZ6 1657 aa16.54■□□□□ 0.24
VPS4B-202ENST00000588059 FAM98CQ17RN3 349 aaKnown RBP16.54■□□□□ 0.24
VPS4B-202ENST00000588059 DLC1Q96QB1 1528 aa16.54■□□□□ 0.24
VPS4B-202ENST00000588059 DHX57Q6P158 1386 aaKnown RBP16.53■□□□□ 0.24
VPS4B-202ENST00000588059 PRAM1Q96QH2 718 aa16.53■□□□□ 0.24
VPS4B-202ENST00000588059 MPHOSPH9Q99550 1183 aa16.53■□□□□ 0.24
VPS4B-202ENST00000588059 SAFB2Q14151 953 aaKnown RBP eCLIP16.52■□□□□ 0.24
VPS4B-202ENST00000588059 CFAP70Q5T0N1 1121 aa16.52■□□□□ 0.24
VPS4B-202ENST00000588059 DISP2A7MBM2 1401 aa16.52■□□□□ 0.23
VPS4B-202ENST00000588059 PMFBP1Q8TBY8 1022 aa16.51■□□□□ 0.23
VPS4B-202ENST00000588059 BTG4Q9NY30 223 aa16.51■□□□□ 0.23
VPS4B-202ENST00000588059 EN1Q05925 392 aaPredicted RBP16.5■□□□□ 0.23
VPS4B-202ENST00000588059 FAM182BQ5T319 152 aa16.49■□□□□ 0.23
VPS4B-202ENST00000588059 SPATA31A5Q5VU36 1347 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms