RNA–Protein interactions for RNA: ENST00000587904.5

LINC01539-201, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 2 BASIC

Gene LINC01539, Length 2,068 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-201ENST00000587904 RIMS2Q9UQ26 1411 aa12.84□□□□□ -0.35
LINC01539-201ENST00000587904 PNISRQ8TF01 805 aaKnown RBP12.84□□□□□ -0.35
LINC01539-201ENST00000587904 TNRQ92752 1358 aa12.83□□□□□ -0.36
LINC01539-201ENST00000587904 DLC1Q96QB1 1528 aa12.82□□□□□ -0.36
LINC01539-201ENST00000587904 TMEM132EQ6IEE7 984 aa12.82□□□□□ -0.36
LINC01539-201ENST00000587904 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.82□□□□□ -0.36
LINC01539-201ENST00000587904 RTN4Q9NQC3 1192 aaKnown RBP12.82□□□□□ -0.36
LINC01539-201ENST00000587904 SETD1AO15047 1707 aaKnown RBP12.82□□□□□ -0.36
LINC01539-201ENST00000587904 YTHDC2Q9H6S0 1430 aaKnown RBP12.82□□□□□ -0.36
LINC01539-201ENST00000587904 USP32Q8NFA0 1604 aa12.81□□□□□ -0.36
LINC01539-201ENST00000587904 TULP4Q9NRJ4 1543 aa12.81□□□□□ -0.36
LINC01539-201ENST00000587904 KDM4FA0A1W2PPD8 638 aa12.81□□□□□ -0.36
LINC01539-201ENST00000587904 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
LINC01539-201ENST00000587904 PTPRMP28827 1452 aa12.81□□□□□ -0.36
LINC01539-201ENST00000587904 NLRP1Q9C000 1473 aa12.81□□□□□ -0.36
LINC01539-201ENST00000587904 EVC2Q86UK5 1308 aa12.81□□□□□ -0.36
LINC01539-201ENST00000587904 CNGB1Q14028 1251 aaPredicted RBP12.81□□□□□ -0.36
LINC01539-201ENST00000587904 NINLQ9Y2I6 1382 aa12.8□□□□□ -0.36
LINC01539-201ENST00000587904 CC2D1BQ5T0F9 858 aaKnown RBP12.8□□□□□ -0.36
LINC01539-201ENST00000587904 NUTM2DQ5VT03 806 aaPredicted RBP12.8□□□□□ -0.36
LINC01539-201ENST00000587904 UBR1Q8IWV7 1749 aa12.8□□□□□ -0.36
LINC01539-201ENST00000587904 HDGFP51858 240 aaKnown RBP12.79□□□□□ -0.36
LINC01539-201ENST00000587904 NBR1Q14596 966 aa12.79□□□□□ -0.36
LINC01539-201ENST00000587904 ZMYND15Q9H091 742 aa12.79□□□□□ -0.36
LINC01539-201ENST00000587904 FER1L4A9Z1Z3 1794 aa12.79□□□□□ -0.36
LINC01539-201ENST00000587904 NRXN3Q9Y4C0 1643 aa12.78□□□□□ -0.36
LINC01539-201ENST00000587904 KNDC1Q76NI1 1749 aa12.77□□□□□ -0.37
LINC01539-201ENST00000587904 C3P01024 1663 aa12.76□□□□□ -0.37
LINC01539-201ENST00000587904 ATAD2Q6PL18 1390 aa12.75□□□□□ -0.37
LINC01539-201ENST00000587904 TMEM2Q9UHN6 1383 aa12.75□□□□□ -0.37
LINC01539-201ENST00000587904 BLMP54132 1417 aaPredicted RBP12.75□□□□□ -0.37
LINC01539-201ENST00000587904 ANKRD36BQ8N2N9 1353 aa12.75□□□□□ -0.37
LINC01539-201ENST00000587904 ABCC11Q96J66 1382 aa12.75□□□□□ -0.37
LINC01539-201ENST00000587904 PPP2R1AP30153 589 aa12.74□□□□□ -0.37
LINC01539-201ENST00000587904 SMG6Q86US8 1419 aaKnown RBP12.74□□□□□ -0.37
LINC01539-201ENST00000587904 NSD3Q9BZ95 1437 aa12.74□□□□□ -0.37
LINC01539-201ENST00000587904 NSD2O96028 1365 aa12.73□□□□□ -0.37
LINC01539-201ENST00000587904 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
LINC01539-201ENST00000587904 TECPR2O15040 1411 aa12.73□□□□□ -0.37
LINC01539-201ENST00000587904 CPS1P31327 1500 aa12.73□□□□□ -0.37
LINC01539-201ENST00000587904 CARD14Q9BXL6 1004 aa12.72□□□□□ -0.37
LINC01539-201ENST00000587904 POGKQ9P215 609 aa12.72□□□□□ -0.37
LINC01539-201ENST00000587904 STK26Q9P289 416 aa12.72□□□□□ -0.37
LINC01539-201ENST00000587904 SLIT1O75093 1534 aa12.71□□□□□ -0.37
LINC01539-201ENST00000587904 PRAM1Q96QH2 718 aa12.71□□□□□ -0.37
LINC01539-201ENST00000587904 FAM135BQ49AJ0 1406 aa12.71□□□□□ -0.37
LINC01539-201ENST00000587904 PLEKHG1Q9ULL1 1385 aa12.71□□□□□ -0.38
LINC01539-201ENST00000587904 SIRT1Q96EB6 747 aa12.7□□□□□ -0.38
LINC01539-201ENST00000587904 CGNL1Q0VF96 1302 aa12.7□□□□□ -0.38
LINC01539-201ENST00000587904 ARHGAP23Q9P227 1491 aa12.7□□□□□ -0.38
LINC01539-201ENST00000587904 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
LINC01539-201ENST00000587904 SLC12A5Q9H2X9 1139 aa12.69□□□□□ -0.38
LINC01539-201ENST00000587904 PDE3BQ13370 1112 aa12.68□□□□□ -0.38
LINC01539-201ENST00000587904 NUDCQ9Y266 331 aa12.68□□□□□ -0.38
LINC01539-201ENST00000587904 DIP2AQ14689 1571 aa12.68□□□□□ -0.38
LINC01539-201ENST00000587904 PAK3O75914 559 aaPredicted RBP12.68□□□□□ -0.38
LINC01539-201ENST00000587904 SRPK2P78362 688 aaKnown RBP12.68□□□□□ -0.38
LINC01539-201ENST00000587904 MED14O60244 1454 aa12.67□□□□□ -0.38
LINC01539-201ENST00000587904 POLR3AO14802 1390 aaPredicted RBP12.67□□□□□ -0.38
LINC01539-201ENST00000587904 METP08581 1390 aa12.67□□□□□ -0.38
LINC01539-201ENST00000587904 MINK1Q8N4C8 1332 aaPredicted RBP12.67□□□□□ -0.38
LINC01539-201ENST00000587904 WDR43Q15061 677 aaKnown RBP eCLIP12.67□□□□□ -0.38
LINC01539-201ENST00000587904 CABP2Q9NPB3 220 aa12.67□□□□□ -0.38
LINC01539-201ENST00000587904 ATP7BP35670 1465 aa12.67□□□□□ -0.38
LINC01539-201ENST00000587904 ADAMTS13Q76LX8 1427 aa12.67□□□□□ -0.38
LINC01539-201ENST00000587904 ANKRD26Q9UPS8 1709 aa12.67□□□□□ -0.38
LINC01539-201ENST00000587904 SAFB2Q14151 953 aaKnown RBP eCLIP12.66□□□□□ -0.38
LINC01539-201ENST00000587904 TERF2IPQ9NYB0 399 aa12.66□□□□□ -0.38
LINC01539-201ENST00000587904 A0A1W2PP64 1363 aa12.65□□□□□ -0.38
LINC01539-201ENST00000587904 ADGRB2O60241 1585 aa12.65□□□□□ -0.38
LINC01539-201ENST00000587904 EID1Q9Y6B2 187 aa12.65□□□□□ -0.38
LINC01539-201ENST00000587904 FGD1P98174 961 aa12.65□□□□□ -0.39
LINC01539-201ENST00000587904 PDE4CQ08493 712 aa12.65□□□□□ -0.39
LINC01539-201ENST00000587904 MORC1Q86VD1 984 aa12.65□□□□□ -0.39
LINC01539-201ENST00000587904 CD163L1Q9NR16 1453 aa12.64□□□□□ -0.39
LINC01539-201ENST00000587904 IPO9Q96P70 1041 aaKnown RBP12.64□□□□□ -0.39
LINC01539-201ENST00000587904 CEP170BQ9Y4F5 1589 aaPredicted RBP12.63□□□□□ -0.39
LINC01539-201ENST00000587904 CDK19Q9BWU1 502 aa12.63□□□□□ -0.39
LINC01539-201ENST00000587904 RIMS1Q86UR5 1692 aaKnown RBP12.63□□□□□ -0.39
LINC01539-201ENST00000587904 ZNF142P52746 1687 aaPredicted RBP12.63□□□□□ -0.39
LINC01539-201ENST00000587904 CEBPAP49715 358 aaPredicted RBP12.63□□□□□ -0.39
LINC01539-201ENST00000587904 HDGFL2Q7Z4V5 671 aaPredicted RBP12.63□□□□□ -0.39
LINC01539-201ENST00000587904 THEMISQ8N1K5 641 aaPredicted RBP12.63□□□□□ -0.39
LINC01539-201ENST00000587904 PLEKHH1Q9ULM0 1364 aa12.63□□□□□ -0.39
LINC01539-201ENST00000587904 ADAMTSL3P82987 1691 aa12.62□□□□□ -0.39
LINC01539-201ENST00000587904 FAM43AQ8N2R8 423 aa12.62□□□□□ -0.39
LINC01539-201ENST00000587904 ADAMTS8Q9UP79 889 aa12.62□□□□□ -0.39
LINC01539-201ENST00000587904 KIF20BQ96Q89 1820 aa12.62□□□□□ -0.39
LINC01539-201ENST00000587904 NGEFQ8N5V2 710 aa12.61□□□□□ -0.39
LINC01539-201ENST00000587904 SHPRHQ149N8 1683 aa12.61□□□□□ -0.39
LINC01539-201ENST00000587904 AAMPQ13685 434 aa12.61□□□□□ -0.39
LINC01539-201ENST00000587904 TXNDC2Q86VQ3 553 aa12.61□□□□□ -0.39
LINC01539-201ENST00000587904 PTCH1Q13635 1447 aa12.61□□□□□ -0.39
LINC01539-201ENST00000587904 WASLO00401 505 aaPredicted RBP12.6□□□□□ -0.39
LINC01539-201ENST00000587904 LTKP29376 864 aa12.6□□□□□ -0.39
LINC01539-201ENST00000587904 PPP4R2Q9NY27 417 aa12.6□□□□□ -0.39
LINC01539-201ENST00000587904 RNF123Q5XPI4 1314 aa12.6□□□□□ -0.39
LINC01539-201ENST00000587904 ANP32AP39687 249 aaKnown RBP12.6□□□□□ -0.39
LINC01539-201ENST00000587904 WAPLQ7Z5K2 1190 aa12.6□□□□□ -0.39
LINC01539-201ENST00000587904 ZBTB47Q9UFB7 747 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms