RNA–Protein interactions for RNA: ENST00000583976.1

SKA2-209, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-209ENST00000583976 UPF1Q92900 1129 aaKnown RBP eCLIP23.42■■□□□ 1.34
SKA2-209ENST00000583976 ADAMTS2O95450 1211 aa23.41■■□□□ 1.34
SKA2-209ENST00000583976 TECPR2O15040 1411 aa23.41■■□□□ 1.34
SKA2-209ENST00000583976 PIK3C2GO75747 1445 aa23.41■■□□□ 1.34
SKA2-209ENST00000583976 RGL3Q3MIN7 710 aa23.4■■□□□ 1.34
SKA2-209ENST00000583976 PXDNQ92626 1479 aa23.4■■□□□ 1.34
SKA2-209ENST00000583976 PLEKHH1Q9ULM0 1364 aa23.4■■□□□ 1.34
SKA2-209ENST00000583976 FMN2Q9NZ56 1722 aa23.38■■□□□ 1.33
SKA2-209ENST00000583976 MYOM2P54296 1465 aa23.37■■□□□ 1.33
SKA2-209ENST00000583976 MPHOSPH9Q99550 1183 aa23.37■■□□□ 1.33
SKA2-209ENST00000583976 STK26Q9P289 416 aa23.37■■□□□ 1.33
SKA2-209ENST00000583976 LRPPRCP42704 1394 aaKnown RBP23.37■■□□□ 1.33
SKA2-209ENST00000583976 ANKRD30BQ9BXX2 1392 aa23.35■■□□□ 1.33
SKA2-209ENST00000583976 MARF1Q9Y4F3 1742 aaKnown RBP23.34■■□□□ 1.33
SKA2-209ENST00000583976 XPCQ01831 940 aaPredicted RBP23.34■■□□□ 1.33
SKA2-209ENST00000583976 WAPLQ7Z5K2 1190 aa23.34■■□□□ 1.33
SKA2-209ENST00000583976 NUTM2FA1L443 756 aa23.33■■□□□ 1.33
SKA2-209ENST00000583976 TMEM132EQ6IEE7 984 aa23.33■■□□□ 1.33
SKA2-209ENST00000583976 ESCO1Q5FWF5 840 aa23.32■■□□□ 1.32
SKA2-209ENST00000583976 YTHDC2Q9H6S0 1430 aaKnown RBP23.32■■□□□ 1.32
SKA2-209ENST00000583976 NGLY1Q96IV0 654 aa23.31■■□□□ 1.32
SKA2-209ENST00000583976 QTRT2Q9H974 415 aaKnown RBP23.31■■□□□ 1.32
SKA2-209ENST00000583976 KIF1AQ12756 1690 aa23.3■■□□□ 1.32
SKA2-209ENST00000583976 RBM6P78332 1123 aaKnown RBP23.3■■□□□ 1.32
SKA2-209ENST00000583976 NPHP3Q7Z494 1330 aa23.3■■□□□ 1.32
SKA2-209ENST00000583976 NRXN1Q9ULB1 1477 aa23.3■■□□□ 1.32
SKA2-209ENST00000583976 ABCC11Q96J66 1382 aa23.29■■□□□ 1.32
SKA2-209ENST00000583976 EP400Q96L91 3159 aa23.28■■□□□ 1.32
SKA2-209ENST00000583976 ATRNO75882 1429 aa23.28■■□□□ 1.32
SKA2-209ENST00000583976 RGPD8O14715 1765 aaPredicted RBP23.27■■□□□ 1.32
SKA2-209ENST00000583976 FOXO3O43524 673 aa23.26■■□□□ 1.31
SKA2-209ENST00000583976 USP21Q9UK80 565 aa23.26■■□□□ 1.31
SKA2-209ENST00000583976 BCL9LQ86UU0 1499 aa23.23■■□□□ 1.31
SKA2-209ENST00000583976 USP32Q8NFA0 1604 aa23.22■■□□□ 1.31
SKA2-209ENST00000583976 ABCA3Q99758 1704 aa23.22■■□□□ 1.31
SKA2-209ENST00000583976 FNBP4Q8N3X1 1017 aaPredicted RBP23.22■■□□□ 1.31
SKA2-209ENST00000583976 RAB3GAP2Q9H2M9 1393 aa23.22■■□□□ 1.31
SKA2-209ENST00000583976 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.22■■□□□ 1.31
SKA2-209ENST00000583976 TRPC5Q9UL62 973 aaPredicted RBP23.2■■□□□ 1.3
SKA2-209ENST00000583976 CFAP70Q5T0N1 1121 aa23.19■■□□□ 1.3
SKA2-209ENST00000583976 ADGRB1O14514 1584 aa23.18■■□□□ 1.3
SKA2-209ENST00000583976 ADGRB2O60241 1585 aa23.18■■□□□ 1.3
SKA2-209ENST00000583976 GLI3P10071 1580 aa23.18■■□□□ 1.3
SKA2-209ENST00000583976 ATAD2Q6PL18 1390 aa23.17■■□□□ 1.3
SKA2-209ENST00000583976 C14orf93Q9H972 538 aaKnown RBP23.17■■□□□ 1.3
SKA2-209ENST00000583976 SRCAPQ6ZRS2 3230 aa23.17■■□□□ 1.3
SKA2-209ENST00000583976 SAFB2Q14151 953 aaKnown RBP eCLIP23.16■■□□□ 1.3
SKA2-209ENST00000583976 DLC1Q96QB1 1528 aa23.16■■□□□ 1.3
SKA2-209ENST00000583976 TNS3Q68CZ2 1445 aa23.16■■□□□ 1.3
SKA2-209ENST00000583976 PLCH1Q4KWH8 1693 aa23.16■■□□□ 1.3
SKA2-209ENST00000583976 SPATA31A3Q5VYP0 1347 aa23.15■■□□□ 1.3
SKA2-209ENST00000583976 SLIT2O94813 1529 aa23.14■■□□□ 1.3
SKA2-209ENST00000583976 PRAM1Q96QH2 718 aa23.13■■□□□ 1.29
SKA2-209ENST00000583976 DHX57Q6P158 1386 aaKnown RBP23.13■■□□□ 1.29
SKA2-209ENST00000583976 RALGAPBQ86X10 1494 aa23.11■■□□□ 1.29
SKA2-209ENST00000583976 TRPM3Q9HCF6 1732 aaPredicted RBP23.11■■□□□ 1.29
SKA2-209ENST00000583976 PLEKHG5O94827 1062 aa23.1■■□□□ 1.29
SKA2-209ENST00000583976 PHF8Q9UPP1 1060 aa23.1■■□□□ 1.29
SKA2-209ENST00000583976 KRT28Q7Z3Y7 464 aa23.09■■□□□ 1.29
SKA2-209ENST00000583976 SIRT1Q96EB6 747 aa23.09■■□□□ 1.29
SKA2-209ENST00000583976 BRWD3Q6RI45 1802 aa23.08■■□□□ 1.29
SKA2-209ENST00000583976 ANKARQ7Z5J8 1434 aa23.08■■□□□ 1.28
SKA2-209ENST00000583976 CABLES1Q8TDN4 633 aa23.07■■□□□ 1.28
SKA2-209ENST00000583976 NWD2Q9ULI1 1742 aa23.06■■□□□ 1.28
SKA2-209ENST00000583976 GJD4Q96KN9 370 aaPredicted RBP23.06■■□□□ 1.28
SKA2-209ENST00000583976 NRAPQ86VF7 1730 aa23.05■■□□□ 1.28
SKA2-209ENST00000583976 ARHGEF28Q8N1W1 1705 aaKnown RBP23.05■■□□□ 1.28
SKA2-209ENST00000583976 TULP4Q9NRJ4 1543 aa23.04■■□□□ 1.28
SKA2-209ENST00000583976 ALS2Q96Q42 1657 aa23.04■■□□□ 1.28
SKA2-209ENST00000583976 UNC5CLQ8IV45 518 aa23.04■■□□□ 1.28
SKA2-209ENST00000583976 HIRIP3Q9BW71 556 aaPredicted RBP23.04■■□□□ 1.28
SKA2-209ENST00000583976 SBNO1A3KN83 1393 aa23.03■■□□□ 1.28
SKA2-209ENST00000583976 PMFBP1Q8TBY8 1022 aa23.03■■□□□ 1.28
SKA2-209ENST00000583976 CRYBG1Q9Y4K1 1723 aa23.02■■□□□ 1.28
SKA2-209ENST00000583976 POGKQ9P215 609 aa23.02■■□□□ 1.28
SKA2-209ENST00000583976 TRAK1Q9UPV9 953 aa23.02■■□□□ 1.28
SKA2-209ENST00000583976 PRR36Q9H6K5 1346 aa23.02■■□□□ 1.28
SKA2-209ENST00000583976 ACIN1Q9UKV3 1341 aaKnown RBP23.02■■□□□ 1.28
SKA2-209ENST00000583976 HAP1P54257 671 aaPredicted RBP23.01■■□□□ 1.27
SKA2-209ENST00000583976 MINK1Q8N4C8 1332 aaPredicted RBP23.01■■□□□ 1.27
SKA2-209ENST00000583976 LMOD2Q6P5Q4 547 aa23■■□□□ 1.27
SKA2-209ENST00000583976 ARHGEF10O15013 1369 aa23■■□□□ 1.27
SKA2-209ENST00000583976 KDM2AQ9Y2K7 1162 aa22.99■■□□□ 1.27
SKA2-209ENST00000583976 PSME1Q06323 249 aa22.97■■□□□ 1.27
SKA2-209ENST00000583976 DCAF11Q8TEB1 546 aa22.96■■□□□ 1.27
SKA2-209ENST00000583976 ATP7BP35670 1465 aa22.96■■□□□ 1.27
SKA2-209ENST00000583976 ITSN1Q15811 1721 aa22.96■■□□□ 1.27
SKA2-209ENST00000583976 COL14A1Q05707 1796 aaKnown RBP22.94■■□□□ 1.26
SKA2-209ENST00000583976 EIF3AQ14152 1382 aaKnown RBP22.93■■□□□ 1.26
SKA2-209ENST00000583976 TRIM26Q12899 539 aaPredicted RBP22.93■■□□□ 1.26
SKA2-209ENST00000583976 TOPAZ1Q8N9V7 1692 aa22.93■■□□□ 1.26
SKA2-209ENST00000583976 BLMP54132 1417 aaPredicted RBP22.92■■□□□ 1.26
SKA2-209ENST00000583976 VPS72Q15906 364 aa22.92■■□□□ 1.26
SKA2-209ENST00000583976 PHRF1Q9P1Y6 1649 aaKnown RBP22.92■■□□□ 1.26
SKA2-209ENST00000583976 CCDC9Q9Y3X0 531 aaKnown RBP22.91■■□□□ 1.26
SKA2-209ENST00000583976 SEPT12Q8IYM1 358 aa22.9■■□□□ 1.26
SKA2-209ENST00000583976 GPRASP1Q5JY77 1395 aa22.89■■□□□ 1.26
SKA2-209ENST00000583976 FAM83GA6ND36 823 aa22.89■■□□□ 1.25
SKA2-209ENST00000583976 WASLO00401 505 aaPredicted RBP22.89■■□□□ 1.25
SKA2-209ENST00000583976 KIAA1210Q9ULL0 1709 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms