RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PRR20BP86481 221 aa10.75□□□□□ -0.69
SMCHD1-208ENST00000583344 PRR20AP86496 221 aa10.75□□□□□ -0.69
SMCHD1-208ENST00000583344 TTLL12Q14166 644 aaPredicted RBP10.74□□□□□ -0.69
SMCHD1-208ENST00000583344 FOXC1Q12948 553 aa10.73□□□□□ -0.69
SMCHD1-208ENST00000583344 USB1Q9BQ65 265 aaKnown RBP10.73□□□□□ -0.69
SMCHD1-208ENST00000583344 SSTR3P32745 418 aaPredicted RBP10.72□□□□□ -0.69
SMCHD1-208ENST00000583344 RPIAP49247 311 aa10.72□□□□□ -0.69
SMCHD1-208ENST00000583344 NUTM1Q86Y26 1132 aa10.72□□□□□ -0.69
SMCHD1-208ENST00000583344 PKD2L1Q9P0L9 805 aa10.72□□□□□ -0.69
SMCHD1-208ENST00000583344 MMP16P51512 607 aa10.71□□□□□ -0.69
SMCHD1-208ENST00000583344 SYMPKQ92797 1274 aaKnown RBP10.71□□□□□ -0.69
SMCHD1-208ENST00000583344 FAM187AA6NFU0 413 aa10.7□□□□□ -0.7
SMCHD1-208ENST00000583344 AMHR2Q16671 573 aa10.7□□□□□ -0.7
SMCHD1-208ENST00000583344 PKDCCQ504Y2 493 aa10.7□□□□□ -0.7
SMCHD1-208ENST00000583344 DXOO77932 396 aaKnown RBP10.69□□□□□ -0.7
SMCHD1-208ENST00000583344 GIGYF2Q6Y7W6 1299 aaKnown RBP10.69□□□□□ -0.7
SMCHD1-208ENST00000583344 DGAT1O75907 488 aa10.67□□□□□ -0.7
SMCHD1-208ENST00000583344 CD2BP2O95400 341 aaKnown RBP10.67□□□□□ -0.7
SMCHD1-208ENST00000583344 SPIRE2Q8WWL2 714 aa10.67□□□□□ -0.7
SMCHD1-208ENST00000583344 ZBTB24O43167 697 aaPredicted RBP10.66□□□□□ -0.7
SMCHD1-208ENST00000583344 FDX1P10109 184 aa10.66□□□□□ -0.7
SMCHD1-208ENST00000583344 MYT1Q01538 1121 aa10.66□□□□□ -0.7
SMCHD1-208ENST00000583344 PCDHGC3Q9UN70 934 aa10.66□□□□□ -0.7
SMCHD1-208ENST00000583344 PARP9Q8IXQ6 854 aa10.65□□□□□ -0.7
SMCHD1-208ENST00000583344 TRIM66O15016 1216 aa10.64□□□□□ -0.71
SMCHD1-208ENST00000583344 NDUFV2P19404 249 aa10.64□□□□□ -0.71
SMCHD1-208ENST00000583344 TRIM32Q13049 653 aa10.64□□□□□ -0.71
SMCHD1-208ENST00000583344 CCDC24Q8N4L8 307 aa10.64□□□□□ -0.71
SMCHD1-208ENST00000583344 MOXD2PA6NHM9 499 aa10.63□□□□□ -0.71
SMCHD1-208ENST00000583344 C6orf229H3BNL8 230 aa10.62□□□□□ -0.71
SMCHD1-208ENST00000583344 JUNDP17535 347 aa10.62□□□□□ -0.71
SMCHD1-208ENST00000583344 RETREG3Q86VR2 466 aa10.62□□□□□ -0.71
SMCHD1-208ENST00000583344 BEGAINQ9BUH8 593 aa10.62□□□□□ -0.71
SMCHD1-208ENST00000583344 AK7Q96M32 723 aa10.61□□□□□ -0.71
SMCHD1-208ENST00000583344 TOR4AQ9NXH8 423 aa10.61□□□□□ -0.71
SMCHD1-208ENST00000583344 ST8SIA5O15466 376 aa10.6□□□□□ -0.71
SMCHD1-208ENST00000583344 MS4A1P11836 297 aa10.6□□□□□ -0.71
SMCHD1-208ENST00000583344 ZNF787Q6DD87 383 aa10.6□□□□□ -0.71
SMCHD1-208ENST00000583344 CYP4X1Q8N118 509 aa10.6□□□□□ -0.71
SMCHD1-208ENST00000583344 WNT7AO00755 349 aa10.57□□□□□ -0.72
SMCHD1-208ENST00000583344 NUDT12Q9BQG2 462 aa10.57□□□□□ -0.72
SMCHD1-208ENST00000583344 TBC1D2Q9BYX2 928 aa10.57□□□□□ -0.72
SMCHD1-208ENST00000583344 SLC24A3Q9HC58 644 aa10.56□□□□□ -0.72
SMCHD1-208ENST00000583344 AAASQ9NRG9 546 aa10.56□□□□□ -0.72
SMCHD1-208ENST00000583344 TTC24A2A3L6 582 aaPredicted RBP10.55□□□□□ -0.72
SMCHD1-208ENST00000583344 POTECB2RU33 542 aa10.55□□□□□ -0.72
SMCHD1-208ENST00000583344 SKOR1P84550 965 aa10.55□□□□□ -0.72
SMCHD1-208ENST00000583344 PTCRAQ6ISU1 281 aaPredicted RBP10.55□□□□□ -0.72
SMCHD1-208ENST00000583344 MRGPRX2Q96LB1 330 aa10.55□□□□□ -0.72
SMCHD1-208ENST00000583344 PDE4DQ08499 809 aa10.54□□□□□ -0.72
SMCHD1-208ENST00000583344 MTMR2Q13614 643 aa10.53□□□□□ -0.72
SMCHD1-208ENST00000583344 RSBN1LQ6PCB5 846 aaPredicted RBP10.53□□□□□ -0.72
SMCHD1-208ENST00000583344 PRR7Q8TB68 274 aa10.53□□□□□ -0.72
SMCHD1-208ENST00000583344 PCDHB15Q9Y5E8 787 aa10.52□□□□□ -0.73
SMCHD1-208ENST00000583344 AVPP01185 164 aa10.51□□□□□ -0.73
SMCHD1-208ENST00000583344 CCNYL3P0C7X3 344 aa10.51□□□□□ -0.73
SMCHD1-208ENST00000583344 SMPD1P17405 629 aa10.51□□□□□ -0.73
SMCHD1-208ENST00000583344 RC3H1Q5TC82 1133 aaKnown RBP10.51□□□□□ -0.73
SMCHD1-208ENST00000583344 SNIP1Q8TAD8 396 aaKnown RBP10.51□□□□□ -0.73
SMCHD1-208ENST00000583344 J3QL48 77 aa10.5□□□□□ -0.73
SMCHD1-208ENST00000583344 DACH1Q9UI36 760 aa10.5□□□□□ -0.73
SMCHD1-208ENST00000583344 WNT7BP56706 349 aa10.49□□□□□ -0.73
SMCHD1-208ENST00000583344 PTPRNQ16849 979 aa10.49□□□□□ -0.73
SMCHD1-208ENST00000583344 CRIPAKQ8N1N5 446 aa10.49□□□□□ -0.73
SMCHD1-208ENST00000583344 SPTLC1O15269 473 aa10.48□□□□□ -0.73
SMCHD1-208ENST00000583344 DIXDC1Q155Q3 683 aa10.48□□□□□ -0.73
SMCHD1-208ENST00000583344 CSPP1Q1MSJ5 1256 aa10.48□□□□□ -0.73
SMCHD1-208ENST00000583344 SPDYE5A6NIY4 337 aa10.47□□□□□ -0.73
SMCHD1-208ENST00000583344 AXIN1O15169 862 aa10.47□□□□□ -0.73
SMCHD1-208ENST00000583344 GJA5P36382 358 aa10.47□□□□□ -0.73
SMCHD1-208ENST00000583344 CABLES1Q8TDN4 633 aa10.47□□□□□ -0.73
SMCHD1-208ENST00000583344 CFAP99D6REC4 459 aa10.46□□□□□ -0.73
SMCHD1-208ENST00000583344 RIC3Q7Z5B4 369 aa10.46□□□□□ -0.73
SMCHD1-208ENST00000583344 ZNF775Q96BV0 537 aaPredicted RBP10.46□□□□□ -0.73
SMCHD1-208ENST00000583344 UNC93B1Q9H1C4 597 aa10.46□□□□□ -0.73
SMCHD1-208ENST00000583344 HRCP23327 699 aa10.45□□□□□ -0.74
SMCHD1-208ENST00000583344 CTC1Q2NKJ3 1217 aa10.45□□□□□ -0.74
SMCHD1-208ENST00000583344 LINC01559Q495D7 138 aa10.45□□□□□ -0.74
SMCHD1-208ENST00000583344 EVA1BQ9NVM1 165 aa10.45□□□□□ -0.74
SMCHD1-208ENST00000583344 SH3BP2P78314 561 aa10.44□□□□□ -0.74
SMCHD1-208ENST00000583344 KCNH2Q12809 1159 aa10.44□□□□□ -0.74
SMCHD1-208ENST00000583344 MYSM1Q5VVJ2 828 aa10.44□□□□□ -0.74
SMCHD1-208ENST00000583344 DESI1Q6ICB0 168 aa10.44□□□□□ -0.74
SMCHD1-208ENST00000583344 HPS1Q92902 700 aa10.44□□□□□ -0.74
SMCHD1-208ENST00000583344 ZBTB3Q9H5J0 574 aa10.44□□□□□ -0.74
SMCHD1-208ENST00000583344 LIMD1Q9UGP4 676 aa10.44□□□□□ -0.74
SMCHD1-208ENST00000583344 SMCPP49901 116 aaPredicted RBP10.43□□□□□ -0.74
SMCHD1-208ENST00000583344 EHBP1Q8NDI1 1231 aa10.43□□□□□ -0.74
SMCHD1-208ENST00000583344 ALDH1A1P00352 501 aa10.42□□□□□ -0.74
SMCHD1-208ENST00000583344 BAP1Q92560 729 aa10.42□□□□□ -0.74
SMCHD1-208ENST00000583344 GMPR2Q9P2T1 348 aaKnown RBP10.42□□□□□ -0.74
SMCHD1-208ENST00000583344 QPCTQ16769 361 aa10.41□□□□□ -0.74
SMCHD1-208ENST00000583344 SIAH2O43255 324 aa10.4□□□□□ -0.74
SMCHD1-208ENST00000583344 CTHP32929 405 aa10.4□□□□□ -0.74
SMCHD1-208ENST00000583344 PRPF38BQ5VTL8 546 aaKnown RBP10.4□□□□□ -0.74
SMCHD1-208ENST00000583344 LYPD8Q6UX82 237 aa10.4□□□□□ -0.74
SMCHD1-208ENST00000583344 MAP10Q9P2G4 905 aa10.39□□□□□ -0.75
SMCHD1-208ENST00000583344 ZNF511Q8NB15 262 aa10.38□□□□□ -0.75
SMCHD1-208ENST00000583344 TSC1Q92574 1164 aa10.38□□□□□ -0.75
SMCHD1-208ENST00000583344 PER1O15534 1290 aaPredicted RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms