RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 IFT172Q9UG01 1749 aa30.25■■■□□ 2.43
SHMT1-209ENST00000582653 RXRBP28702 533 aa30.25■■■□□ 2.43
SHMT1-209ENST00000582653 TECPR2O15040 1411 aa30.23■■■□□ 2.43
SHMT1-209ENST00000582653 AFF2P51816 1311 aa30.22■■■□□ 2.43
SHMT1-209ENST00000582653 PIK3C2GO75747 1445 aa30.22■■■□□ 2.43
SHMT1-209ENST00000582653 LAMC1P11047 1609 aa30.22■■■□□ 2.43
SHMT1-209ENST00000582653 ESCO1Q5FWF5 840 aa30.22■■■□□ 2.43
SHMT1-209ENST00000582653 C14orf93Q9H972 538 aaKnown RBP30.22■■■□□ 2.43
SHMT1-209ENST00000582653 SIRT1Q96EB6 747 aa30.21■■■□□ 2.43
SHMT1-209ENST00000582653 C8orf37Q96NL8 207 aa30.19■■■□□ 2.42
SHMT1-209ENST00000582653 QTRT2Q9H974 415 aaKnown RBP30.16■■■□□ 2.42
SHMT1-209ENST00000582653 NPHP3Q7Z494 1330 aa30.16■■■□□ 2.42
SHMT1-209ENST00000582653 CDC42BPGQ6DT37 1551 aa30.15■■■□□ 2.42
SHMT1-209ENST00000582653 YTHDC2Q9H6S0 1430 aaKnown RBP30.15■■■□□ 2.42
SHMT1-209ENST00000582653 FOXO3O43524 673 aa30.14■■■□□ 2.42
SHMT1-209ENST00000582653 ADAMTS2O95450 1211 aa30.14■■■□□ 2.42
SHMT1-209ENST00000582653 CFAP70Q5T0N1 1121 aa30.14■■■□□ 2.42
SHMT1-209ENST00000582653 NGLY1Q96IV0 654 aa30.14■■■□□ 2.42
SHMT1-209ENST00000582653 PLEKHH1Q9ULM0 1364 aa30.14■■■□□ 2.41
SHMT1-209ENST00000582653 NUTM2FA1L443 756 aa30.12■■■□□ 2.41
SHMT1-209ENST00000582653 DHX57Q6P158 1386 aaKnown RBP30.12■■■□□ 2.41
SHMT1-209ENST00000582653 NRXN1Q9ULB1 1477 aa30.12■■■□□ 2.41
SHMT1-209ENST00000582653 HRCP23327 699 aa30.11■■■□□ 2.41
SHMT1-209ENST00000582653 CDK12Q9NYV4 1490 aaPredicted RBP30.1■■■□□ 2.41
SHMT1-209ENST00000582653 RBM6P78332 1123 aaKnown RBP30.09■■■□□ 2.41
SHMT1-209ENST00000582653 KNDC1Q76NI1 1749 aa30.08■■■□□ 2.41
SHMT1-209ENST00000582653 UPF1Q92900 1129 aaKnown RBP eCLIP30.08■■■□□ 2.41
SHMT1-209ENST00000582653 MYOM2P54296 1465 aa30.07■■■□□ 2.4
SHMT1-209ENST00000582653 FNBP4Q8N3X1 1017 aaPredicted RBP30.06■■■□□ 2.4
SHMT1-209ENST00000582653 PXDNQ92626 1479 aa30.05■■■□□ 2.4
SHMT1-209ENST00000582653 XPCQ01831 940 aaPredicted RBP30.04■■■□□ 2.4
SHMT1-209ENST00000582653 USP21Q9UK80 565 aa30.03■■■□□ 2.4
SHMT1-209ENST00000582653 KDM2AQ9Y2K7 1162 aa30.02■■■□□ 2.4
SHMT1-209ENST00000582653 COL22A1Q8NFW1 1626 aaPredicted RBP30■■■□□ 2.39
SHMT1-209ENST00000582653 STAC3Q96MF2 364 aa30■■■□□ 2.39
SHMT1-209ENST00000582653 PRAM1Q96QH2 718 aa30■■■□□ 2.39
SHMT1-209ENST00000582653 DCAF11Q8TEB1 546 aa29.99■■■□□ 2.39
SHMT1-209ENST00000582653 KRT28Q7Z3Y7 464 aa29.98■■■□□ 2.39
SHMT1-209ENST00000582653 TRPC5Q9UL62 973 aaPredicted RBP29.98■■■□□ 2.39
SHMT1-209ENST00000582653 FMN2Q9NZ56 1722 aa29.97■■■□□ 2.39
SHMT1-209ENST00000582653 POGKQ9P215 609 aa29.97■■■□□ 2.39
SHMT1-209ENST00000582653 SAFB2Q14151 953 aaKnown RBP eCLIP29.96■■■□□ 2.39
SHMT1-209ENST00000582653 SPATA31A3Q5VYP0 1347 aa29.96■■■□□ 2.39
SHMT1-209ENST00000582653 PHF8Q9UPP1 1060 aa29.95■■■□□ 2.39
SHMT1-209ENST00000582653 PSME1Q06323 249 aa29.93■■■□□ 2.38
SHMT1-209ENST00000582653 RGS12O14924 1447 aa29.92■■■□□ 2.38
SHMT1-209ENST00000582653 DLC1Q96QB1 1528 aa29.91■■■□□ 2.38
SHMT1-209ENST00000582653 TRAK1Q9UPV9 953 aa29.91■■■□□ 2.38
SHMT1-209ENST00000582653 KIF1AQ12756 1690 aa29.89■■■□□ 2.38
SHMT1-209ENST00000582653 ADGRB1O14514 1584 aa29.89■■■□□ 2.38
SHMT1-209ENST00000582653 BCL9LQ86UU0 1499 aa29.87■■■□□ 2.37
SHMT1-209ENST00000582653 ATRNO75882 1429 aa29.87■■■□□ 2.37
SHMT1-209ENST00000582653 RGPD8O14715 1765 aaPredicted RBP29.85■■■□□ 2.37
SHMT1-209ENST00000582653 PMFBP1Q8TBY8 1022 aa29.83■■■□□ 2.37
SHMT1-209ENST00000582653 ANKARQ7Z5J8 1434 aa29.82■■■□□ 2.36
SHMT1-209ENST00000582653 SBNO1A3KN83 1393 aa29.82■■■□□ 2.36
SHMT1-209ENST00000582653 GJD4Q96KN9 370 aaPredicted RBP29.82■■■□□ 2.36
SHMT1-209ENST00000582653 HIRIP3Q9BW71 556 aaPredicted RBP29.82■■■□□ 2.36
SHMT1-209ENST00000582653 MARF1Q9Y4F3 1742 aaKnown RBP29.81■■■□□ 2.36
SHMT1-209ENST00000582653 UNC5CLQ8IV45 518 aa29.8■■■□□ 2.36
SHMT1-209ENST00000582653 TNS3Q68CZ2 1445 aa29.79■■■□□ 2.36
SHMT1-209ENST00000582653 MINK1Q8N4C8 1332 aaPredicted RBP29.79■■■□□ 2.36
SHMT1-209ENST00000582653 WASLO00401 505 aaPredicted RBP29.79■■■□□ 2.36
SHMT1-209ENST00000582653 CABLES1Q8TDN4 633 aa29.77■■■□□ 2.36
SHMT1-209ENST00000582653 ADGRB2O60241 1585 aa29.77■■■□□ 2.36
SHMT1-209ENST00000582653 HAP1P54257 671 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-209ENST00000582653 LMOD2Q6P5Q4 547 aa29.76■■■□□ 2.35
SHMT1-209ENST00000582653 ATAD2Q6PL18 1390 aa29.76■■■□□ 2.35
SHMT1-209ENST00000582653 SLIT2O94813 1529 aa29.76■■■□□ 2.35
SHMT1-209ENST00000582653 ARHGEF10O15013 1369 aa29.75■■■□□ 2.35
SHMT1-209ENST00000582653 EIF3AQ14152 1382 aaKnown RBP29.75■■■□□ 2.35
SHMT1-209ENST00000582653 USP32Q8NFA0 1604 aa29.74■■■□□ 2.35
SHMT1-209ENST00000582653 PRR36Q9H6K5 1346 aa29.73■■■□□ 2.35
SHMT1-209ENST00000582653 GPRASP1Q5JY77 1395 aa29.69■■■□□ 2.34
SHMT1-209ENST00000582653 PLEKHG5O94827 1062 aa29.69■■■□□ 2.34
SHMT1-209ENST00000582653 TULP4Q9NRJ4 1543 aa29.67■■■□□ 2.34
SHMT1-209ENST00000582653 NGDNQ8NEJ9 315 aaKnown RBP29.67■■■□□ 2.34
SHMT1-209ENST00000582653 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.67■■■□□ 2.34
SHMT1-209ENST00000582653 FAM83GA6ND36 823 aa29.66■■■□□ 2.34
SHMT1-209ENST00000582653 VPS72Q15906 364 aa29.66■■■□□ 2.34
SHMT1-209ENST00000582653 NBPF1Q3BBV0 1214 aa29.65■■■□□ 2.34
SHMT1-209ENST00000582653 CCDC125Q86Z20 511 aa29.65■■■□□ 2.34
SHMT1-209ENST00000582653 NUDT16Q96DE0 195 aaKnown RBP29.65■■■□□ 2.34
SHMT1-209ENST00000582653 RALGAPBQ86X10 1494 aa29.65■■■□□ 2.34
SHMT1-209ENST00000582653 ARHGEF28Q8N1W1 1705 aaKnown RBP29.63■■■□□ 2.33
SHMT1-209ENST00000582653 ONECUT3O60422 494 aaPredicted RBP29.62■■■□□ 2.33
SHMT1-209ENST00000582653 SIN3AQ96ST3 1273 aa29.62■■■□□ 2.33
SHMT1-209ENST00000582653 CDK19Q9BWU1 502 aa29.62■■■□□ 2.33
SHMT1-209ENST00000582653 GLI3P10071 1580 aa29.6■■■□□ 2.33
SHMT1-209ENST00000582653 TRPM3Q9HCF6 1732 aaPredicted RBP29.59■■■□□ 2.33
SHMT1-209ENST00000582653 PAK3O75914 559 aaPredicted RBP29.58■■■□□ 2.33
SHMT1-209ENST00000582653 L3MBTL2Q969R5 705 aa29.58■■■□□ 2.33
SHMT1-209ENST00000582653 KIAA1210Q9ULL0 1709 aa29.57■■■□□ 2.32
SHMT1-209ENST00000582653 SEPT12Q8IYM1 358 aa29.57■■■□□ 2.32
SHMT1-209ENST00000582653 CCDC9Q9Y3X0 531 aaKnown RBP29.57■■■□□ 2.32
SHMT1-209ENST00000582653 CCDC61Q9Y6R9 512 aa29.56■■■□□ 2.32
SHMT1-209ENST00000582653 NWD2Q9ULI1 1742 aa29.56■■■□□ 2.32
SHMT1-209ENST00000582653 NEUROD1Q13562 356 aa29.55■■■□□ 2.32
SHMT1-209ENST00000582653 BTG4Q9NY30 223 aa29.55■■■□□ 2.32
SHMT1-209ENST00000582653 ALS2Q96Q42 1657 aa29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms