RNA–Protein interactions for RNA: ENST00000582230.5

TOP3A-213, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 588 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-213ENST00000582230 ATF3P18847 181 aa28.44■■■□□ 2.14
TOP3A-213ENST00000582230 CADPS2Q86UW7 1296 aa28.44■■■□□ 2.14
TOP3A-213ENST00000582230 DCCP43146 1447 aa28.43■■■□□ 2.14
TOP3A-213ENST00000582230 EIF3AQ14152 1382 aaKnown RBP28.42■■■□□ 2.14
TOP3A-213ENST00000582230 SAFB2Q14151 953 aaKnown RBP eCLIP28.42■■■□□ 2.14
TOP3A-213ENST00000582230 CENPJQ9HC77 1338 aaPredicted RBP28.4■■■□□ 2.14
TOP3A-213ENST00000582230 ARHGEF28Q8N1W1 1705 aaKnown RBP28.39■■■□□ 2.14
TOP3A-213ENST00000582230 NALCNQ8IZF0 1738 aa28.37■■■□□ 2.13
TOP3A-213ENST00000582230 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.37■■■□□ 2.13
TOP3A-213ENST00000582230 FBXO41Q8TF61 875 aa28.35■■■□□ 2.13
TOP3A-213ENST00000582230 SLAIN2Q9P270 581 aa28.35■■■□□ 2.13
TOP3A-213ENST00000582230 MINK1Q8N4C8 1332 aaPredicted RBP28.34■■■□□ 2.13
TOP3A-213ENST00000582230 CDC42BPGQ6DT37 1551 aa28.33■■■□□ 2.12
TOP3A-213ENST00000582230 HIRIP3Q9BW71 556 aaPredicted RBP28.3■■■□□ 2.12
TOP3A-213ENST00000582230 ADGRB2O60241 1585 aa28.29■■■□□ 2.12
TOP3A-213ENST00000582230 PIP4K2BP78356 416 aa28.29■■■□□ 2.12
TOP3A-213ENST00000582230 MST1RQ04912 1400 aa28.28■■■□□ 2.12
TOP3A-213ENST00000582230 USP47Q96K76 1375 aa28.28■■■□□ 2.12
TOP3A-213ENST00000582230 WASLO00401 505 aaPredicted RBP28.28■■■□□ 2.12
TOP3A-213ENST00000582230 SCAF1Q9H7N4 1312 aaKnown RBP28.26■■■□□ 2.11
TOP3A-213ENST00000582230 SBNO2Q9Y2G9 1366 aa28.25■■■□□ 2.11
TOP3A-213ENST00000582230 SLC24A1O60721 1099 aa28.25■■■□□ 2.11
TOP3A-213ENST00000582230 ST20-MTHFSA0A0A6YYL1 179 aa28.24■■■□□ 2.11
TOP3A-213ENST00000582230 C1orf167Q5SNV9 1468 aa28.23■■■□□ 2.11
TOP3A-213ENST00000582230 ZEB1P37275 1124 aaPredicted RBP28.23■■■□□ 2.11
TOP3A-213ENST00000582230 QRICH2Q9H0J4 1663 aa28.23■■■□□ 2.11
TOP3A-213ENST00000582230 CDK19Q9BWU1 502 aa28.22■■■□□ 2.11
TOP3A-213ENST00000582230 EVC2Q86UK5 1308 aa28.21■■■□□ 2.11
TOP3A-213ENST00000582230 EIF4G2P78344 907 aaKnown RBP eCLIP28.21■■■□□ 2.11
TOP3A-213ENST00000582230 NUTM2FA1L443 756 aa28.2■■■□□ 2.1
TOP3A-213ENST00000582230 ANKARQ7Z5J8 1434 aa28.19■■■□□ 2.1
TOP3A-213ENST00000582230 FMN2Q9NZ56 1722 aa28.19■■■□□ 2.1
TOP3A-213ENST00000582230 BRINP3Q76B58 766 aa28.18■■■□□ 2.1
TOP3A-213ENST00000582230 TESK2Q96S53 571 aa28.17■■■□□ 2.1
TOP3A-213ENST00000582230 TULP4Q9NRJ4 1543 aa28.17■■■□□ 2.1
TOP3A-213ENST00000582230 SRPK2P78362 688 aaKnown RBP28.16■■■□□ 2.1
TOP3A-213ENST00000582230 ESCO1Q5FWF5 840 aa28.16■■■□□ 2.1
TOP3A-213ENST00000582230 ORAI2Q96SN7 254 aa28.15■■■□□ 2.1
TOP3A-213ENST00000582230 NUDT16Q96DE0 195 aaKnown RBP28.14■■■□□ 2.1
TOP3A-213ENST00000582230 ROBO1Q9Y6N7 1651 aa28.13■■■□□ 2.09
TOP3A-213ENST00000582230 HSPA5P11021 654 aaKnown RBP28.12■■■□□ 2.09
TOP3A-213ENST00000582230 CABP2Q9NPB3 220 aa28.12■■■□□ 2.09
TOP3A-213ENST00000582230 PRR36Q9H6K5 1346 aa28.12■■■□□ 2.09
TOP3A-213ENST00000582230 CCDC61Q9Y6R9 512 aa28.11■■■□□ 2.09
TOP3A-213ENST00000582230 TMF1P82094 1093 aa28.1■■■□□ 2.09
TOP3A-213ENST00000582230 PUS7Q96PZ0 661 aaKnown RBP28.1■■■□□ 2.09
TOP3A-213ENST00000582230 PHF8Q9UPP1 1060 aa28.09■■■□□ 2.09
TOP3A-213ENST00000582230 ATP7BP35670 1465 aa28.08■■■□□ 2.09
TOP3A-213ENST00000582230 USP32Q8NFA0 1604 aa28.07■■■□□ 2.08
TOP3A-213ENST00000582230 CDCA8Q53HL2 280 aa28.05■■■□□ 2.08
TOP3A-213ENST00000582230 ATAD2Q6PL18 1390 aa28.05■■■□□ 2.08
TOP3A-213ENST00000582230 NPHP3Q7Z494 1330 aa28.04■■■□□ 2.08
TOP3A-213ENST00000582230 HSPA1LP34931 641 aa28.04■■■□□ 2.08
TOP3A-213ENST00000582230 FOXO3O43524 673 aa28.03■■■□□ 2.08
TOP3A-213ENST00000582230 PLEKHG3A1L390 1219 aa28.02■■■□□ 2.08
TOP3A-213ENST00000582230 PMFBP1Q8TBY8 1022 aa28.02■■■□□ 2.08
TOP3A-213ENST00000582230 AHDC1Q5TGY3 1603 aaPredicted RBP28.02■■■□□ 2.08
TOP3A-213ENST00000582230 KIF1AQ12756 1690 aa28.01■■■□□ 2.07
TOP3A-213ENST00000582230 DISP3Q9P2K9 1392 aa28■■■□□ 2.07
TOP3A-213ENST00000582230 PPIP5K1Q6PFW1 1433 aa28■■■□□ 2.07
TOP3A-213ENST00000582230 NGDNQ8NEJ9 315 aaKnown RBP27.99■■■□□ 2.07
TOP3A-213ENST00000582230 DDX17Q92841 729 aaKnown RBP27.99■■■□□ 2.07
TOP3A-213ENST00000582230 RGPD8O14715 1765 aaPredicted RBP27.99■■■□□ 2.07
TOP3A-213ENST00000582230 ITSN1Q15811 1721 aa27.98■■■□□ 2.07
TOP3A-213ENST00000582230 CABP1Q9NZU7 370 aa27.98■■■□□ 2.07
TOP3A-213ENST00000582230 SOS2Q07890 1332 aaPredicted RBP27.97■■■□□ 2.07
TOP3A-213ENST00000582230 PSME1Q06323 249 aa27.97■■■□□ 2.07
TOP3A-213ENST00000582230 NHSL1Q5SYE7 1610 aa27.96■■■□□ 2.07
TOP3A-213ENST00000582230 TOPAZ1Q8N9V7 1692 aa27.96■■■□□ 2.07
TOP3A-213ENST00000582230 POLR3AO14802 1390 aaPredicted RBP27.96■■■□□ 2.07
TOP3A-213ENST00000582230 ACEP12821 1306 aa27.94■■■□□ 2.06
TOP3A-213ENST00000582230 KRT28Q7Z3Y7 464 aa27.94■■■□□ 2.06
TOP3A-213ENST00000582230 LRRC59Q96AG4 307 aaKnown RBP27.94■■■□□ 2.06
TOP3A-213ENST00000582230 PHLPP1O60346 1717 aa27.94■■■□□ 2.06
TOP3A-213ENST00000582230 NINLQ9Y2I6 1382 aa27.93■■■□□ 2.06
TOP3A-213ENST00000582230 PXDNQ92626 1479 aa27.91■■■□□ 2.06
TOP3A-213ENST00000582230 XPCQ01831 940 aaPredicted RBP27.91■■■□□ 2.06
TOP3A-213ENST00000582230 TMC1Q8TDI8 760 aa27.91■■■□□ 2.06
TOP3A-213ENST00000582230 COL16A1Q07092 1604 aaPredicted RBP27.9■■■□□ 2.06
TOP3A-213ENST00000582230 ZNF692Q9BU19 519 aaPredicted RBP27.9■■■□□ 2.06
TOP3A-213ENST00000582230 SLC12A5Q9H2X9 1139 aa27.88■■■□□ 2.05
TOP3A-213ENST00000582230 SBNO1A3KN83 1393 aa27.87■■■□□ 2.05
TOP3A-213ENST00000582230 JCADQ9P266 1359 aa27.86■■■□□ 2.05
TOP3A-213ENST00000582230 TERF2IPQ9NYB0 399 aa27.86■■■□□ 2.05
TOP3A-213ENST00000582230 BRD4O60885 1362 aaPredicted RBP27.86■■■□□ 2.05
TOP3A-213ENST00000582230 HDGFL2Q7Z4V5 671 aaPredicted RBP27.85■■■□□ 2.05
TOP3A-213ENST00000582230 CPSF1Q10570 1443 aaKnown RBP27.84■■■□□ 2.05
TOP3A-213ENST00000582230 C11orf95C9JLR9 678 aaPredicted RBP27.84■■■□□ 2.05
TOP3A-213ENST00000582230 SPATA31A3Q5VYP0 1347 aa27.84■■■□□ 2.05
TOP3A-213ENST00000582230 POLR3GLQ9BT43 218 aa27.82■■■□□ 2.04
TOP3A-213ENST00000582230 USP6P35125 1406 aa27.82■■■□□ 2.04
TOP3A-213ENST00000582230 PAK3O75914 559 aaPredicted RBP27.8■■■□□ 2.04
TOP3A-213ENST00000582230 KTN1Q86UP2 1357 aaKnown RBP27.8■■■□□ 2.04
TOP3A-213ENST00000582230 TNS3Q68CZ2 1445 aa27.8■■■□□ 2.04
TOP3A-213ENST00000582230 CD163L1Q9NR16 1453 aa27.79■■■□□ 2.04
TOP3A-213ENST00000582230 ARHGEF10O15013 1369 aa27.79■■■□□ 2.04
TOP3A-213ENST00000582230 PNPLA6Q8IY17 1366 aa27.79■■■□□ 2.04
TOP3A-213ENST00000582230 KIF7Q2M1P5 1343 aa27.79■■■□□ 2.04
TOP3A-213ENST00000582230 A0A1W2PP64 1363 aa27.77■■■□□ 2.04
TOP3A-213ENST00000582230 ANKRD36BQ8N2N9 1353 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms