RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CLTCL1P53675 1640 aa19.4■□□□□ 0.7
SS18-219ENST00000581570 MYOM2P54296 1465 aa19.39■□□□□ 0.69
SS18-219ENST00000581570 BCL9LQ86UU0 1499 aa19.39■□□□□ 0.69
SS18-219ENST00000581570 HFM1A2PYH4 1435 aa19.38■□□□□ 0.69
SS18-219ENST00000581570 RPGRIP1LQ68CZ1 1315 aa19.37■□□□□ 0.69
SS18-219ENST00000581570 FOXO3O43524 673 aa19.37■□□□□ 0.69
SS18-219ENST00000581570 COL22A1Q8NFW1 1626 aaPredicted RBP19.36■□□□□ 0.69
SS18-219ENST00000581570 PRAG1Q86YV5 1406 aa19.36■□□□□ 0.69
SS18-219ENST00000581570 XPCQ01831 940 aaPredicted RBP19.36■□□□□ 0.69
SS18-219ENST00000581570 PIAS4Q8N2W9 510 aaPredicted RBP19.34■□□□□ 0.69
SS18-219ENST00000581570 UNC5CLQ8IV45 518 aa19.33■□□□□ 0.68
SS18-219ENST00000581570 PXDNQ92626 1479 aa19.33■□□□□ 0.68
SS18-219ENST00000581570 LRPPRCP42704 1394 aaKnown RBP19.32■□□□□ 0.68
SS18-219ENST00000581570 PPARGC1BQ86YN6 1023 aaKnown RBP19.32■□□□□ 0.68
SS18-219ENST00000581570 KIF1BO60333 1816 aa19.31■□□□□ 0.68
SS18-219ENST00000581570 NUTM2FA1L443 756 aa19.31■□□□□ 0.68
SS18-219ENST00000581570 BLMP54132 1417 aaPredicted RBP19.3■□□□□ 0.68
SS18-219ENST00000581570 EP400Q96L91 3159 aa19.29■□□□□ 0.68
SS18-219ENST00000581570 DEFB132Q7Z7B7 95 aa19.29■□□□□ 0.68
SS18-219ENST00000581570 RALGAPBQ86X10 1494 aa19.28■□□□□ 0.68
SS18-219ENST00000581570 SF3B2Q13435 895 aaKnown RBP19.28■□□□□ 0.68
SS18-219ENST00000581570 WAPLQ7Z5K2 1190 aa19.28■□□□□ 0.68
SS18-219ENST00000581570 STK26Q9P289 416 aa19.28■□□□□ 0.68
SS18-219ENST00000581570 CDC42BPGQ6DT37 1551 aa19.27■□□□□ 0.68
SS18-219ENST00000581570 NAIPQ13075 1403 aa19.27■□□□□ 0.68
SS18-219ENST00000581570 SPATA31A3Q5VYP0 1347 aa19.26■□□□□ 0.67
SS18-219ENST00000581570 SLIT2O94813 1529 aa19.25■□□□□ 0.67
SS18-219ENST00000581570 SEPT12Q8IYM1 358 aa19.25■□□□□ 0.67
SS18-219ENST00000581570 SLC4A1APQ9BWU0 796 aaKnown RBP19.25■□□□□ 0.67
SS18-219ENST00000581570 KRT28Q7Z3Y7 464 aa19.24■□□□□ 0.67
SS18-219ENST00000581570 ADGRF5Q8IZF2 1346 aa19.24■□□□□ 0.67
SS18-219ENST00000581570 GLI3P10071 1580 aa19.23■□□□□ 0.67
SS18-219ENST00000581570 MARF1Q9Y4F3 1742 aaKnown RBP19.23■□□□□ 0.67
SS18-219ENST00000581570 HAP1P54257 671 aaPredicted RBP19.23■□□□□ 0.67
SS18-219ENST00000581570 VPS72Q15906 364 aa19.22■□□□□ 0.67
SS18-219ENST00000581570 CCDC9Q9Y3X0 531 aaKnown RBP19.21■□□□□ 0.67
SS18-219ENST00000581570 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.2■□□□□ 0.66
SS18-219ENST00000581570 CCDC144AA2RUR9 1427 aa19.2■□□□□ 0.66
SS18-219ENST00000581570 TMEM132EQ6IEE7 984 aa19.2■□□□□ 0.66
SS18-219ENST00000581570 ABCC11Q96J66 1382 aa19.19■□□□□ 0.66
SS18-219ENST00000581570 PLEKHH1Q9ULM0 1364 aa19.19■□□□□ 0.66
SS18-219ENST00000581570 TECPR2O15040 1411 aa19.19■□□□□ 0.66
SS18-219ENST00000581570 ONECUT3O60422 494 aaPredicted RBP19.19■□□□□ 0.66
SS18-219ENST00000581570 RGL3Q3MIN7 710 aa19.19■□□□□ 0.66
SS18-219ENST00000581570 KRT27Q7Z3Y8 459 aa19.19■□□□□ 0.66
SS18-219ENST00000581570 PPLO60437 1756 aa19.19■□□□□ 0.66
SS18-219ENST00000581570 PLEKHG5O94827 1062 aa19.18■□□□□ 0.66
SS18-219ENST00000581570 PSME1Q06323 249 aa19.18■□□□□ 0.66
SS18-219ENST00000581570 CABLES1Q8TDN4 633 aa19.18■□□□□ 0.66
SS18-219ENST00000581570 RRBP1Q9P2E9 1410 aaKnown RBP19.17■□□□□ 0.66
SS18-219ENST00000581570 PHF8Q9UPP1 1060 aa19.16■□□□□ 0.66
SS18-219ENST00000581570 USP32Q8NFA0 1604 aa19.15■□□□□ 0.66
SS18-219ENST00000581570 PSDA5PKW4 1024 aaPredicted RBP19.15■□□□□ 0.66
SS18-219ENST00000581570 BAG6P46379 1132 aa19.15■□□□□ 0.66
SS18-219ENST00000581570 LMOD2Q6P5Q4 547 aa19.15■□□□□ 0.66
SS18-219ENST00000581570 ANKRD30BQ9BXX2 1392 aa19.14■□□□□ 0.65
SS18-219ENST00000581570 TNS3Q68CZ2 1445 aa19.14■□□□□ 0.65
SS18-219ENST00000581570 A0A0G2JS52 829 aa19.13■□□□□ 0.65
SS18-219ENST00000581570 MYT1Q01538 1121 aa19.13■□□□□ 0.65
SS18-219ENST00000581570 SIRT1Q96EB6 747 aa19.13■□□□□ 0.65
SS18-219ENST00000581570 BRWD3Q6RI45 1802 aa19.13■□□□□ 0.65
SS18-219ENST00000581570 FAM83GA6ND36 823 aa19.12■□□□□ 0.65
SS18-219ENST00000581570 HRCP23327 699 aa19.12■□□□□ 0.65
SS18-219ENST00000581570 KIF1AQ12756 1690 aa19.11■□□□□ 0.65
SS18-219ENST00000581570 YTHDC2Q9H6S0 1430 aaKnown RBP19.11■□□□□ 0.65
SS18-219ENST00000581570 SBNO1A3KN83 1393 aa19.11■□□□□ 0.65
SS18-219ENST00000581570 FMN2Q9NZ56 1722 aa19.11■□□□□ 0.65
SS18-219ENST00000581570 LRP5O75197 1615 aa19.11■□□□□ 0.65
SS18-219ENST00000581570 SPATA31E1Q6ZUB1 1445 aa19.09■□□□□ 0.65
SS18-219ENST00000581570 ARHGEF10O15013 1369 aa19.09■□□□□ 0.65
SS18-219ENST00000581570 FAM98CQ17RN3 349 aaKnown RBP19.09■□□□□ 0.65
SS18-219ENST00000581570 PIK3C2GO75747 1445 aa19.08■□□□□ 0.64
SS18-219ENST00000581570 EN1Q05925 392 aaPredicted RBP19.07■□□□□ 0.64
SS18-219ENST00000581570 KNDC1Q76NI1 1749 aa19.06■□□□□ 0.64
SS18-219ENST00000581570 PMFBP1Q8TBY8 1022 aa19.06■□□□□ 0.64
SS18-219ENST00000581570 C14orf93Q9H972 538 aaKnown RBP19.06■□□□□ 0.64
SS18-219ENST00000581570 BTG4Q9NY30 223 aa19.06■□□□□ 0.64
SS18-219ENST00000581570 NWD2Q9ULI1 1742 aa19.05■□□□□ 0.64
SS18-219ENST00000581570 NRXN1Q9ULB1 1477 aa19.05■□□□□ 0.64
SS18-219ENST00000581570 SAFB2Q14151 953 aaKnown RBP eCLIP19.05■□□□□ 0.64
SS18-219ENST00000581570 PRAM1Q96QH2 718 aa19.04■□□□□ 0.64
SS18-219ENST00000581570 PLCH1Q4KWH8 1693 aa19.04■□□□□ 0.64
SS18-219ENST00000581570 DHX57Q6P158 1386 aaKnown RBP19.04■□□□□ 0.64
SS18-219ENST00000581570 MSH5O43196 834 aa19.03■□□□□ 0.64
SS18-219ENST00000581570 R3HDM1Q15032 1099 aaKnown RBP19.03■□□□□ 0.64
SS18-219ENST00000581570 CFAP70Q5T0N1 1121 aa19.03■□□□□ 0.64
SS18-219ENST00000581570 MPHOSPH9Q99550 1183 aa19.03■□□□□ 0.64
SS18-219ENST00000581570 FAM182BQ5T319 152 aa19.02■□□□□ 0.64
SS18-219ENST00000581570 POGKQ9P215 609 aa19.01■□□□□ 0.63
SS18-219ENST00000581570 RGPD8O14715 1765 aaPredicted RBP18.99■□□□□ 0.63
SS18-219ENST00000581570 IFT172Q9UG01 1749 aa18.99■□□□□ 0.63
SS18-219ENST00000581570 SPATA31A5Q5VU36 1347 aa18.99■□□□□ 0.63
SS18-219ENST00000581570 SPATA31A7Q8IWB4 1347 aa18.99■□□□□ 0.63
SS18-219ENST00000581570 ANKARQ7Z5J8 1434 aa18.98■□□□□ 0.63
SS18-219ENST00000581570 GPRASP1Q5JY77 1395 aa18.97■□□□□ 0.63
SS18-219ENST00000581570 EZH2Q15910 746 aaKnown RBP18.97■□□□□ 0.63
SS18-219ENST00000581570 ABCA3Q99758 1704 aa18.97■□□□□ 0.63
SS18-219ENST00000581570 DISP2A7MBM2 1401 aa18.95■□□□□ 0.62
SS18-219ENST00000581570 ACIN1Q9UKV3 1341 aaKnown RBP18.95■□□□□ 0.62
SS18-219ENST00000581570 NRAPQ86VF7 1730 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms