RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 POLA2Q14181 598 aa14.46□□□□□ -0.09
SS18-217ENST00000580958 DLC1Q96QB1 1528 aa14.45□□□□□ -0.1
SS18-217ENST00000580958 TULP4Q9NRJ4 1543 aa14.45□□□□□ -0.1
SS18-217ENST00000580958 POTEHQ6S545 545 aa14.44□□□□□ -0.1
SS18-217ENST00000580958 LRPPRCP42704 1394 aaKnown RBP14.44□□□□□ -0.1
SS18-217ENST00000580958 LTKP29376 864 aa14.43□□□□□ -0.1
SS18-217ENST00000580958 CNGB1Q14028 1251 aaPredicted RBP14.43□□□□□ -0.1
SS18-217ENST00000580958 PANK3Q9H999 370 aa14.43□□□□□ -0.1
SS18-217ENST00000580958 PLEKHG1Q9ULL1 1385 aa14.43□□□□□ -0.1
SS18-217ENST00000580958 ADAMTS13Q76LX8 1427 aa14.42□□□□□ -0.1
SS18-217ENST00000580958 TXNDC2Q86VQ3 553 aa14.42□□□□□ -0.1
SS18-217ENST00000580958 BCANQ96GW7 911 aa14.42□□□□□ -0.1
SS18-217ENST00000580958 SAFB2Q14151 953 aaKnown RBP eCLIP14.41□□□□□ -0.1
SS18-217ENST00000580958 THEMISQ8N1K5 641 aaPredicted RBP14.41□□□□□ -0.1
SS18-217ENST00000580958 EID1Q9Y6B2 187 aa14.41□□□□□ -0.1
SS18-217ENST00000580958 METP08581 1390 aa14.41□□□□□ -0.1
SS18-217ENST00000580958 PRAM1Q96QH2 718 aa14.4□□□□□ -0.1
SS18-217ENST00000580958 POGKQ9P215 609 aa14.4□□□□□ -0.1
SS18-217ENST00000580958 CPS1P31327 1500 aa14.4□□□□□ -0.1
SS18-217ENST00000580958 ABCC11Q96J66 1382 aa14.39□□□□□ -0.11
SS18-217ENST00000580958 PER1O15534 1290 aaPredicted RBP14.39□□□□□ -0.11
SS18-217ENST00000580958 CENPBP07199 599 aaPredicted RBP14.39□□□□□ -0.11
SS18-217ENST00000580958 EVC2Q86UK5 1308 aa14.39□□□□□ -0.11
SS18-217ENST00000580958 MED14O60244 1454 aa14.38□□□□□ -0.11
SS18-217ENST00000580958 DIP2AQ14689 1571 aa14.38□□□□□ -0.11
SS18-217ENST00000580958 MINK1Q8N4C8 1332 aaPredicted RBP14.38□□□□□ -0.11
SS18-217ENST00000580958 KTN1Q86UP2 1357 aaKnown RBP14.37□□□□□ -0.11
SS18-217ENST00000580958 CCDC184Q52MB2 194 aa14.37□□□□□ -0.11
SS18-217ENST00000580958 RBM42Q9BTD8 480 aaKnown RBP14.37□□□□□ -0.11
SS18-217ENST00000580958 PLEKHH1Q9ULM0 1364 aa14.36□□□□□ -0.11
SS18-217ENST00000580958 TECPR2O15040 1411 aa14.36□□□□□ -0.11
SS18-217ENST00000580958 RALBP1Q15311 655 aa14.35□□□□□ -0.11
SS18-217ENST00000580958 PARD3Q8TEW0 1356 aa14.34□□□□□ -0.11
SS18-217ENST00000580958 WAPLQ7Z5K2 1190 aa14.34□□□□□ -0.11
SS18-217ENST00000580958 PUS7Q96PZ0 661 aaKnown RBP14.34□□□□□ -0.11
SS18-217ENST00000580958 MRS2Q9HD23 443 aa14.34□□□□□ -0.11
SS18-217ENST00000580958 CABP2Q9NPB3 220 aa14.34□□□□□ -0.11
SS18-217ENST00000580958 FAM135BQ49AJ0 1406 aa14.33□□□□□ -0.11
SS18-217ENST00000580958 PTPRUQ92729 1446 aa14.33□□□□□ -0.11
SS18-217ENST00000580958 XRN1Q8IZH2 1706 aaKnown RBP14.33□□□□□ -0.12
SS18-217ENST00000580958 CC2D1BQ5T0F9 858 aaKnown RBP14.33□□□□□ -0.12
SS18-217ENST00000580958 TMC1Q8TDI8 760 aa14.33□□□□□ -0.12
SS18-217ENST00000580958 SLC26A8Q96RN1 970 aa14.33□□□□□ -0.12
SS18-217ENST00000580958 ATF5Q9Y2D1 282 aaPredicted RBP14.33□□□□□ -0.12
SS18-217ENST00000580958 KNSTRNQ9Y448 316 aa14.33□□□□□ -0.12
SS18-217ENST00000580958 MYBBP1AQ9BQG0 1328 aaKnown RBP14.33□□□□□ -0.12
SS18-217ENST00000580958 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.32□□□□□ -0.12
SS18-217ENST00000580958 CHD2O14647 1828 aaKnown RBP14.32□□□□□ -0.12
SS18-217ENST00000580958 ZBTB22O15209 634 aa14.32□□□□□ -0.12
SS18-217ENST00000580958 SIRT1Q96EB6 747 aa14.32□□□□□ -0.12
SS18-217ENST00000580958 USP32Q8NFA0 1604 aa14.32□□□□□ -0.12
SS18-217ENST00000580958 SRPK2P78362 688 aaKnown RBP14.31□□□□□ -0.12
SS18-217ENST00000580958 SLC12A5Q9H2X9 1139 aa14.31□□□□□ -0.12
SS18-217ENST00000580958 TBX22Q9Y458 520 aa14.31□□□□□ -0.12
SS18-217ENST00000580958 AMER1Q5JTC6 1135 aaPredicted RBP14.3□□□□□ -0.12
SS18-217ENST00000580958 CDK19Q9BWU1 502 aa14.3□□□□□ -0.12
SS18-217ENST00000580958 ATAD2Q6PL18 1390 aa14.3□□□□□ -0.12
SS18-217ENST00000580958 ROBO2Q9HCK4 1378 aa14.3□□□□□ -0.12
SS18-217ENST00000580958 ADGRB2O60241 1585 aa14.3□□□□□ -0.12
SS18-217ENST00000580958 ANKLE2Q86XL3 938 aa14.29□□□□□ -0.12
SS18-217ENST00000580958 CARD14Q9BXL6 1004 aa14.29□□□□□ -0.12
SS18-217ENST00000580958 BRD4O60885 1362 aaPredicted RBP14.29□□□□□ -0.12
SS18-217ENST00000580958 NPC1L1Q9UHC9 1359 aa14.29□□□□□ -0.12
SS18-217ENST00000580958 NSD3Q9BZ95 1437 aa14.29□□□□□ -0.12
SS18-217ENST00000580958 KIF20BQ96Q89 1820 aa14.27□□□□□ -0.12
SS18-217ENST00000580958 ITSN1Q15811 1721 aa14.27□□□□□ -0.12
SS18-217ENST00000580958 ANKRD26Q9UPS8 1709 aa14.27□□□□□ -0.12
SS18-217ENST00000580958 ANKRD36BQ8N2N9 1353 aa14.27□□□□□ -0.12
SS18-217ENST00000580958 NINLQ9Y2I6 1382 aa14.27□□□□□ -0.12
SS18-217ENST00000580958 PTCH1Q13635 1447 aa14.26□□□□□ -0.13
SS18-217ENST00000580958 FAM9BQ8IZU0 186 aa14.26□□□□□ -0.13
SS18-217ENST00000580958 AMOTL2Q9Y2J4 779 aa14.26□□□□□ -0.13
SS18-217ENST00000580958 AKAP12Q02952 1782 aa14.26□□□□□ -0.13
SS18-217ENST00000580958 WASLO00401 505 aaPredicted RBP14.25□□□□□ -0.13
SS18-217ENST00000580958 NLRP13Q86W25 1043 aa14.25□□□□□ -0.13
SS18-217ENST00000580958 ZBTB12Q9Y330 459 aaPredicted RBP14.25□□□□□ -0.13
SS18-217ENST00000580958 TOPAZ1Q8N9V7 1692 aa14.25□□□□□ -0.13
SS18-217ENST00000580958 CD163L1Q9NR16 1453 aa14.25□□□□□ -0.13
SS18-217ENST00000580958 NPHP4O75161 1426 aaPredicted RBP14.24□□□□□ -0.13
SS18-217ENST00000580958 RGPD8O14715 1765 aaPredicted RBP14.24□□□□□ -0.13
SS18-217ENST00000580958 PIK3R4Q99570 1358 aa14.24□□□□□ -0.13
SS18-217ENST00000580958 A0A1W2PP64 1363 aa14.23□□□□□ -0.13
SS18-217ENST00000580958 MON2Q7Z3U7 1717 aa14.23□□□□□ -0.13
SS18-217ENST00000580958 PPP2R1AP30153 589 aa14.22□□□□□ -0.13
SS18-217ENST00000580958 ATP7BP35670 1465 aa14.22□□□□□ -0.13
SS18-217ENST00000580958 NCKAP5LQ9HCH0 1330 aa14.21□□□□□ -0.13
SS18-217ENST00000580958 HNRNPUQ00839 825 aaKnown RBP eCLIP14.21□□□□□ -0.13
SS18-217ENST00000580958 PNISRQ8TF01 805 aaKnown RBP14.21□□□□□ -0.13
SS18-217ENST00000580958 PPIP5K1Q6PFW1 1433 aa14.21□□□□□ -0.13
SS18-217ENST00000580958 CDC42BPGQ6DT37 1551 aa14.21□□□□□ -0.14
SS18-217ENST00000580958 NALCNQ8IZF0 1738 aa14.21□□□□□ -0.14
SS18-217ENST00000580958 KDM4FA0A1W2PPD8 638 aa14.2□□□□□ -0.14
SS18-217ENST00000580958 HDGFL2Q7Z4V5 671 aaPredicted RBP14.2□□□□□ -0.14
SS18-217ENST00000580958 NUDT16Q96DE0 195 aaKnown RBP14.2□□□□□ -0.14
SS18-217ENST00000580958 TERF2IPQ9NYB0 399 aa14.2□□□□□ -0.14
SS18-217ENST00000580958 CABP1Q9NZU7 370 aa14.2□□□□□ -0.14
SS18-217ENST00000580958 FMN2Q9NZ56 1722 aa14.2□□□□□ -0.14
SS18-217ENST00000580958 CGNL1Q0VF96 1302 aa14.19□□□□□ -0.14
SS18-217ENST00000580958 KCNA6P17658 529 aa14.19□□□□□ -0.14
SS18-217ENST00000580958 PRR36Q9H6K5 1346 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms