RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 PRAM1Q96QH2 718 aa27.85■■■□□ 2.05
SS18-208ENST00000577751 TRAK1Q9UPV9 953 aa27.85■■■□□ 2.05
SS18-208ENST00000577751 C1orf167Q5SNV9 1468 aa27.83■■■□□ 2.05
SS18-208ENST00000577751 PHLPP1O60346 1717 aa27.82■■■□□ 2.04
SS18-208ENST00000577751 NBPF1Q3BBV0 1214 aa27.82■■■□□ 2.04
SS18-208ENST00000577751 AHDC1Q5TGY3 1603 aaPredicted RBP27.81■■■□□ 2.04
SS18-208ENST00000577751 ARHGEF28Q8N1W1 1705 aaKnown RBP27.81■■■□□ 2.04
SS18-208ENST00000577751 POGKQ9P215 609 aa27.8■■■□□ 2.04
SS18-208ENST00000577751 TRPM1Q7Z4N2 1603 aa27.8■■■□□ 2.04
SS18-208ENST00000577751 FMN2Q9NZ56 1722 aa27.78■■■□□ 2.04
SS18-208ENST00000577751 TONSLQ96HA7 1378 aa27.78■■■□□ 2.04
SS18-208ENST00000577751 COL16A1Q07092 1604 aaPredicted RBP27.78■■■□□ 2.04
SS18-208ENST00000577751 SAFB2Q14151 953 aaKnown RBP eCLIP27.77■■■□□ 2.04
SS18-208ENST00000577751 NHSL1Q5SYE7 1610 aa27.77■■■□□ 2.04
SS18-208ENST00000577751 ADGRB2O60241 1585 aa27.76■■■□□ 2.03
SS18-208ENST00000577751 CLSPNQ9HAW4 1339 aa27.75■■■□□ 2.03
SS18-208ENST00000577751 NBPF8Q3BBV2 869 aa27.74■■■□□ 2.03
SS18-208ENST00000577751 ORAI2Q96SN7 254 aa27.74■■■□□ 2.03
SS18-208ENST00000577751 MINK1Q8N4C8 1332 aaPredicted RBP27.68■■■□□ 2.02
SS18-208ENST00000577751 NUTM2FA1L443 756 aa27.68■■■□□ 2.02
SS18-208ENST00000577751 ESCO1Q5FWF5 840 aa27.68■■■□□ 2.02
SS18-208ENST00000577751 RGPD8O14715 1765 aaPredicted RBP27.68■■■□□ 2.02
SS18-208ENST00000577751 ROCK2O75116 1388 aaKnown RBP27.66■■■□□ 2.02
SS18-208ENST00000577751 JCADQ9P266 1359 aa27.66■■■□□ 2.02
SS18-208ENST00000577751 DDX17Q92841 729 aaKnown RBP27.66■■■□□ 2.02
SS18-208ENST00000577751 HIRIP3Q9BW71 556 aaPredicted RBP27.66■■■□□ 2.02
SS18-208ENST00000577751 MED1Q15648 1581 aaPredicted RBP27.65■■■□□ 2.02
SS18-208ENST00000577751 GPRASP1Q5JY77 1395 aa27.65■■■□□ 2.02
SS18-208ENST00000577751 USP32Q8NFA0 1604 aa27.64■■■□□ 2.02
SS18-208ENST00000577751 ANKARQ7Z5J8 1434 aa27.64■■■□□ 2.02
SS18-208ENST00000577751 WASLO00401 505 aaPredicted RBP27.63■■■□□ 2.01
SS18-208ENST00000577751 SOS2Q07890 1332 aaPredicted RBP27.63■■■□□ 2.01
SS18-208ENST00000577751 SHPRHQ149N8 1683 aa27.62■■■□□ 2.01
SS18-208ENST00000577751 KIF1AQ12756 1690 aa27.62■■■□□ 2.01
SS18-208ENST00000577751 RALGAPBQ86X10 1494 aa27.61■■■□□ 2.01
SS18-208ENST00000577751 LRRC59Q96AG4 307 aaKnown RBP27.6■■■□□ 2.01
SS18-208ENST00000577751 TIMELESSQ9UNS1 1208 aa27.6■■■□□ 2.01
SS18-208ENST00000577751 CENPJQ9HC77 1338 aaPredicted RBP27.6■■■□□ 2.01
SS18-208ENST00000577751 EIF3AQ14152 1382 aaKnown RBP27.6■■■□□ 2.01
SS18-208ENST00000577751 TULP4Q9NRJ4 1543 aa27.59■■■□□ 2.01
SS18-208ENST00000577751 NPHP3Q7Z494 1330 aa27.59■■■□□ 2.01
SS18-208ENST00000577751 FOXO3O43524 673 aa27.58■■■□□ 2.01
SS18-208ENST00000577751 CCER1Q8TC90 406 aaPredicted RBP27.58■■■□□ 2.01
SS18-208ENST00000577751 DISP3Q9P2K9 1392 aa27.58■■■□□ 2.01
SS18-208ENST00000577751 QRICH2Q9H0J4 1663 aa27.57■■■□□ 2
SS18-208ENST00000577751 PRR36Q9H6K5 1346 aa27.57■■■□□ 2
SS18-208ENST00000577751 PHF8Q9UPP1 1060 aa27.56■■■□□ 2
SS18-208ENST00000577751 PXDNQ92626 1479 aa27.56■■■□□ 2
SS18-208ENST00000577751 SPATA31A6Q5VVP1 1343 aa27.55■■■□□ 2
SS18-208ENST00000577751 CDK19Q9BWU1 502 aa27.53■■■□□ 2
SS18-208ENST00000577751 CARD11Q9BXL7 1154 aa27.53■■■□□ 2
SS18-208ENST00000577751 ATP7BP35670 1465 aa27.51■■■□□ 2
SS18-208ENST00000577751 PNPLA6Q8IY17 1366 aa27.51■■□□□ 1.99
SS18-208ENST00000577751 NUDT16Q96DE0 195 aaKnown RBP27.5■■□□□ 1.99
SS18-208ENST00000577751 ITSN1Q15811 1721 aa27.5■■□□□ 1.99
SS18-208ENST00000577751 XPCQ01831 940 aaPredicted RBP27.48■■□□□ 1.99
SS18-208ENST00000577751 PMFBP1Q8TBY8 1022 aa27.48■■□□□ 1.99
SS18-208ENST00000577751 LRP6O75581 1613 aa27.48■■□□□ 1.99
SS18-208ENST00000577751 KRT28Q7Z3Y7 464 aa27.47■■□□□ 1.99
SS18-208ENST00000577751 TOPAZ1Q8N9V7 1692 aa27.46■■□□□ 1.99
SS18-208ENST00000577751 COL22A1Q8NFW1 1626 aaPredicted RBP27.45■■□□□ 1.99
SS18-208ENST00000577751 CCDC61Q9Y6R9 512 aa27.44■■□□□ 1.98
SS18-208ENST00000577751 SBNO2Q9Y2G9 1366 aa27.43■■□□□ 1.98
SS18-208ENST00000577751 SPATA31A3Q5VYP0 1347 aa27.42■■□□□ 1.98
SS18-208ENST00000577751 PSME1Q06323 249 aa27.42■■□□□ 1.98
SS18-208ENST00000577751 EVC2Q86UK5 1308 aa27.41■■□□□ 1.98
SS18-208ENST00000577751 SRPK2P78362 688 aaKnown RBP27.41■■□□□ 1.98
SS18-208ENST00000577751 PHF23Q9BUL5 403 aaPredicted RBP27.41■■□□□ 1.98
SS18-208ENST00000577751 SBNO1A3KN83 1393 aa27.4■■□□□ 1.98
SS18-208ENST00000577751 CABP2Q9NPB3 220 aa27.4■■□□□ 1.98
SS18-208ENST00000577751 TRPM3Q9HCF6 1732 aaPredicted RBP27.39■■□□□ 1.98
SS18-208ENST00000577751 PLEKHG3A1L390 1219 aa27.39■■□□□ 1.98
SS18-208ENST00000577751 NUTM2BA6NNL0 878 aaPredicted RBP27.39■■□□□ 1.98
SS18-208ENST00000577751 NUTM2EB1AL46 878 aaPredicted RBP27.39■■□□□ 1.98
SS18-208ENST00000577751 NUTM2AQ8IVF1 878 aaPredicted RBP27.39■■□□□ 1.98
SS18-208ENST00000577751 RGS17Q9UGC6 210 aaPredicted RBP27.39■■□□□ 1.98
SS18-208ENST00000577751 NGDNQ8NEJ9 315 aaKnown RBP27.38■■□□□ 1.97
SS18-208ENST00000577751 POLR3AO14802 1390 aaPredicted RBP27.37■■□□□ 1.97
SS18-208ENST00000577751 TNS3Q68CZ2 1445 aa27.37■■□□□ 1.97
SS18-208ENST00000577751 PPIP5K1Q6PFW1 1433 aa27.34■■□□□ 1.97
SS18-208ENST00000577751 ACEP12821 1306 aa27.34■■□□□ 1.97
SS18-208ENST00000577751 ALS2Q96Q42 1657 aa27.33■■□□□ 1.97
SS18-208ENST00000577751 MEX3CQ5U5Q3 659 aaKnown RBP27.32■■□□□ 1.96
SS18-208ENST00000577751 ILDR2Q71H61 639 aa27.32■■□□□ 1.96
SS18-208ENST00000577751 ST20-MTHFSA0A0A6YYL1 179 aa27.31■■□□□ 1.96
SS18-208ENST00000577751 TESK2Q96S53 571 aa27.31■■□□□ 1.96
SS18-208ENST00000577751 ARHGEF10O15013 1369 aa27.3■■□□□ 1.96
SS18-208ENST00000577751 CABP1Q9NZU7 370 aa27.29■■□□□ 1.96
SS18-208ENST00000577751 USP47Q96K76 1375 aa27.29■■□□□ 1.96
SS18-208ENST00000577751 ATAD2Q6PL18 1390 aa27.27■■□□□ 1.96
SS18-208ENST00000577751 MARF1Q9Y4F3 1742 aaKnown RBP27.27■■□□□ 1.96
SS18-208ENST00000577751 ADAMTS2O95450 1211 aa27.26■■□□□ 1.95
SS18-208ENST00000577751 SLC24A1O60721 1099 aa27.25■■□□□ 1.95
SS18-208ENST00000577751 PUS7Q96PZ0 661 aaKnown RBP27.25■■□□□ 1.95
SS18-208ENST00000577751 LMOD2Q6P5Q4 547 aa27.24■■□□□ 1.95
SS18-208ENST00000577751 ABCA3Q99758 1704 aa27.24■■□□□ 1.95
SS18-208ENST00000577751 POTEAQ6S8J7 498 aa27.23■■□□□ 1.95
SS18-208ENST00000577751 C8orf37Q96NL8 207 aa27.23■■□□□ 1.95
SS18-208ENST00000577751 PAK3O75914 559 aaPredicted RBP27.22■■□□□ 1.95
SS18-208ENST00000577751 BRD4O60885 1362 aaPredicted RBP27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms