RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SPHKAPQ2M3C7 1700 aa14.8□□□□□ -0.04
SS18-207ENST00000577636 NEXMIFQ5QGS0 1516 aa14.79□□□□□ -0.04
SS18-207ENST00000577636 NALCNQ8IZF0 1738 aa14.79□□□□□ -0.04
SS18-207ENST00000577636 STK26Q9P289 416 aa14.79□□□□□ -0.04
SS18-207ENST00000577636 CLTCL1P53675 1640 aa14.78□□□□□ -0.04
SS18-207ENST00000577636 RAB3GAP2Q9H2M9 1393 aa14.78□□□□□ -0.04
SS18-207ENST00000577636 ACIN1Q9UKV3 1341 aaKnown RBP14.78□□□□□ -0.04
SS18-207ENST00000577636 PLEKHG5O94827 1062 aa14.78□□□□□ -0.04
SS18-207ENST00000577636 PTCH1Q13635 1447 aa14.77□□□□□ -0.04
SS18-207ENST00000577636 NPHP3Q7Z494 1330 aa14.77□□□□□ -0.04
SS18-207ENST00000577636 GJD4Q96KN9 370 aaPredicted RBP14.77□□□□□ -0.05
SS18-207ENST00000577636 ATRNO75882 1429 aa14.76□□□□□ -0.05
SS18-207ENST00000577636 HFM1A2PYH4 1435 aa14.75□□□□□ -0.05
SS18-207ENST00000577636 WAPLQ7Z5K2 1190 aa14.75□□□□□ -0.05
SS18-207ENST00000577636 CCDC125Q86Z20 511 aa14.75□□□□□ -0.05
SS18-207ENST00000577636 SLC4A1APQ9BWU0 796 aaKnown RBP14.75□□□□□ -0.05
SS18-207ENST00000577636 RPGRIP1LQ68CZ1 1315 aa14.74□□□□□ -0.05
SS18-207ENST00000577636 RGL3Q3MIN7 710 aa14.74□□□□□ -0.05
SS18-207ENST00000577636 HAP1P54257 671 aaPredicted RBP14.73□□□□□ -0.05
SS18-207ENST00000577636 DHX57Q6P158 1386 aaKnown RBP14.73□□□□□ -0.05
SS18-207ENST00000577636 KIF1BO60333 1816 aa14.72□□□□□ -0.05
SS18-207ENST00000577636 BCL9LQ86UU0 1499 aa14.71□□□□□ -0.05
SS18-207ENST00000577636 TMEM132EQ6IEE7 984 aa14.71□□□□□ -0.05
SS18-207ENST00000577636 DEFB132Q7Z7B7 95 aa14.71□□□□□ -0.05
SS18-207ENST00000577636 UNC5CLQ8IV45 518 aa14.71□□□□□ -0.05
SS18-207ENST00000577636 CCDC9Q9Y3X0 531 aaKnown RBP14.71□□□□□ -0.05
SS18-207ENST00000577636 SRCAPQ6ZRS2 3230 aa14.71□□□□□ -0.06
SS18-207ENST00000577636 LRPPRCP42704 1394 aaKnown RBP14.71□□□□□ -0.06
SS18-207ENST00000577636 ADGRF5Q8IZF2 1346 aa14.7□□□□□ -0.06
SS18-207ENST00000577636 SF3B2Q13435 895 aaKnown RBP14.7□□□□□ -0.06
SS18-207ENST00000577636 MYOM2P54296 1465 aa14.69□□□□□ -0.06
SS18-207ENST00000577636 NAIPQ13075 1403 aa14.69□□□□□ -0.06
SS18-207ENST00000577636 LMOD2Q6P5Q4 547 aa14.69□□□□□ -0.06
SS18-207ENST00000577636 KRT28Q7Z3Y7 464 aa14.69□□□□□ -0.06
SS18-207ENST00000577636 LAMC1P11047 1609 aa14.68□□□□□ -0.06
SS18-207ENST00000577636 SEPT12Q8IYM1 358 aa14.67□□□□□ -0.06
SS18-207ENST00000577636 CABLES1Q8TDN4 633 aa14.67□□□□□ -0.06
SS18-207ENST00000577636 PXDNQ92626 1479 aa14.67□□□□□ -0.06
SS18-207ENST00000577636 PLEKHH1Q9ULM0 1364 aa14.66□□□□□ -0.06
SS18-207ENST00000577636 A0A0G2JS52 829 aa14.66□□□□□ -0.06
SS18-207ENST00000577636 MYT1Q01538 1121 aa14.66□□□□□ -0.06
SS18-207ENST00000577636 COL22A1Q8NFW1 1626 aaPredicted RBP14.66□□□□□ -0.06
SS18-207ENST00000577636 SPATA31A3Q5VYP0 1347 aa14.66□□□□□ -0.06
SS18-207ENST00000577636 RALGAPBQ86X10 1494 aa14.64□□□□□ -0.07
SS18-207ENST00000577636 PSME1Q06323 249 aa14.64□□□□□ -0.07
SS18-207ENST00000577636 BLMP54132 1417 aaPredicted RBP14.64□□□□□ -0.07
SS18-207ENST00000577636 SAFB2Q14151 953 aaKnown RBP eCLIP14.63□□□□□ -0.07
SS18-207ENST00000577636 KRT27Q7Z3Y8 459 aa14.62□□□□□ -0.07
SS18-207ENST00000577636 PRAG1Q86YV5 1406 aa14.62□□□□□ -0.07
SS18-207ENST00000577636 PHF8Q9UPP1 1060 aa14.62□□□□□ -0.07
SS18-207ENST00000577636 CDC42BPGQ6DT37 1551 aa14.61□□□□□ -0.07
SS18-207ENST00000577636 PSDA5PKW4 1024 aaPredicted RBP14.61□□□□□ -0.07
SS18-207ENST00000577636 VPS72Q15906 364 aa14.61□□□□□ -0.07
SS18-207ENST00000577636 ABCC11Q96J66 1382 aa14.6□□□□□ -0.07
SS18-207ENST00000577636 CCDC144AA2RUR9 1427 aa14.6□□□□□ -0.07
SS18-207ENST00000577636 PMFBP1Q8TBY8 1022 aa14.6□□□□□ -0.07
SS18-207ENST00000577636 SLIT2O94813 1529 aa14.6□□□□□ -0.07
SS18-207ENST00000577636 PPLO60437 1756 aa14.6□□□□□ -0.07
SS18-207ENST00000577636 EP400Q96L91 3159 aa14.59□□□□□ -0.07
SS18-207ENST00000577636 GLI3P10071 1580 aa14.59□□□□□ -0.07
SS18-207ENST00000577636 FAM83GA6ND36 823 aa14.58□□□□□ -0.08
SS18-207ENST00000577636 FAM98CQ17RN3 349 aaKnown RBP14.58□□□□□ -0.08
SS18-207ENST00000577636 MPHOSPH9Q99550 1183 aa14.58□□□□□ -0.08
SS18-207ENST00000577636 ANKRD30BQ9BXX2 1392 aa14.58□□□□□ -0.08
SS18-207ENST00000577636 MARF1Q9Y4F3 1742 aaKnown RBP14.58□□□□□ -0.08
SS18-207ENST00000577636 BAG6P46379 1132 aa14.57□□□□□ -0.08
SS18-207ENST00000577636 CFAP70Q5T0N1 1121 aa14.57□□□□□ -0.08
SS18-207ENST00000577636 YTHDC2Q9H6S0 1430 aaKnown RBP14.57□□□□□ -0.08
SS18-207ENST00000577636 FAM182BQ5T319 152 aa14.56□□□□□ -0.08
SS18-207ENST00000577636 PRAM1Q96QH2 718 aa14.56□□□□□ -0.08
SS18-207ENST00000577636 POGKQ9P215 609 aa14.56□□□□□ -0.08
SS18-207ENST00000577636 TECPR2O15040 1411 aa14.56□□□□□ -0.08
SS18-207ENST00000577636 ONECUT3O60422 494 aaPredicted RBP14.55□□□□□ -0.08
SS18-207ENST00000577636 BTG4Q9NY30 223 aa14.55□□□□□ -0.08
SS18-207ENST00000577636 TIMELESSQ9UNS1 1208 aa14.55□□□□□ -0.08
SS18-207ENST00000577636 TNS3Q68CZ2 1445 aa14.55□□□□□ -0.08
SS18-207ENST00000577636 EN1Q05925 392 aaPredicted RBP14.54□□□□□ -0.08
SS18-207ENST00000577636 SIRT1Q96EB6 747 aa14.54□□□□□ -0.08
SS18-207ENST00000577636 C14orf93Q9H972 538 aaKnown RBP14.54□□□□□ -0.08
SS18-207ENST00000577636 BRWD3Q6RI45 1802 aa14.53□□□□□ -0.08
SS18-207ENST00000577636 USP32Q8NFA0 1604 aa14.53□□□□□ -0.08
SS18-207ENST00000577636 SPATA31E1Q6ZUB1 1445 aa14.53□□□□□ -0.08
SS18-207ENST00000577636 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.52□□□□□ -0.08
SS18-207ENST00000577636 SBNO1A3KN83 1393 aa14.52□□□□□ -0.08
SS18-207ENST00000577636 HIRIP3Q9BW71 556 aaPredicted RBP14.52□□□□□ -0.09
SS18-207ENST00000577636 PIK3C2GO75747 1445 aa14.51□□□□□ -0.09
SS18-207ENST00000577636 ARHGEF10O15013 1369 aa14.51□□□□□ -0.09
SS18-207ENST00000577636 PAK3O75914 559 aaPredicted RBP14.51□□□□□ -0.09
SS18-207ENST00000577636 FMN2Q9NZ56 1722 aa14.51□□□□□ -0.09
SS18-207ENST00000577636 KIF1AQ12756 1690 aa14.5□□□□□ -0.09
SS18-207ENST00000577636 NEUROD1Q13562 356 aa14.5□□□□□ -0.09
SS18-207ENST00000577636 R3HDM1Q15032 1099 aaKnown RBP14.5□□□□□ -0.09
SS18-207ENST00000577636 TRAK1Q9UPV9 953 aa14.5□□□□□ -0.09
SS18-207ENST00000577636 MINK1Q8N4C8 1332 aaPredicted RBP14.48□□□□□ -0.09
SS18-207ENST00000577636 RGPD8O14715 1765 aaPredicted RBP14.48□□□□□ -0.09
SS18-207ENST00000577636 NGDNQ8NEJ9 315 aaKnown RBP14.48□□□□□ -0.09
SS18-207ENST00000577636 NRXN1Q9ULB1 1477 aa14.48□□□□□ -0.09
SS18-207ENST00000577636 GPRASP1Q5JY77 1395 aa14.47□□□□□ -0.09
SS18-207ENST00000577636 EZH2Q15910 746 aaKnown RBP14.47□□□□□ -0.09
SS18-207ENST00000577636 KDM2AQ9Y2K7 1162 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms