RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 NINLQ9Y2I6 1382 aa21.11■□□□□ 0.97
SS18-206ENST00000577572 CHD2O14647 1828 aaKnown RBP21.11■□□□□ 0.97
SS18-206ENST00000577572 NWD1Q149M9 1564 aa21.11■□□□□ 0.97
SS18-206ENST00000577572 WAPLQ7Z5K2 1190 aa21.11■□□□□ 0.97
SS18-206ENST00000577572 ATAD2Q6PL18 1390 aa21.1■□□□□ 0.97
SS18-206ENST00000577572 NKTRP30414 1462 aaKnown RBP21.09■□□□□ 0.97
SS18-206ENST00000577572 ADGRB2O60241 1585 aa21.09■□□□□ 0.97
SS18-206ENST00000577572 PLEKHH1Q9ULM0 1364 aa21.09■□□□□ 0.97
SS18-206ENST00000577572 TULP4Q9NRJ4 1543 aa21.08■□□□□ 0.96
SS18-206ENST00000577572 NCOA3Q9Y6Q9 1424 aa21.07■□□□□ 0.96
SS18-206ENST00000577572 STRCQ7RTU9 1775 aa21.07■□□□□ 0.96
SS18-206ENST00000577572 MINK1Q8N4C8 1332 aaPredicted RBP21.06■□□□□ 0.96
SS18-206ENST00000577572 WASLO00401 505 aaPredicted RBP21.06■□□□□ 0.96
SS18-206ENST00000577572 SAFB2Q14151 953 aaKnown RBP eCLIP21.06■□□□□ 0.96
SS18-206ENST00000577572 POLR3GLQ9BT43 218 aa21.05■□□□□ 0.96
SS18-206ENST00000577572 CDK19Q9BWU1 502 aa21.04■□□□□ 0.96
SS18-206ENST00000577572 SRPK2P78362 688 aaKnown RBP21.02■□□□□ 0.96
SS18-206ENST00000577572 CABP2Q9NPB3 220 aa20.99■□□□□ 0.95
SS18-206ENST00000577572 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.98■□□□□ 0.95
SS18-206ENST00000577572 ADGRL3Q9HAR2 1447 aa20.98■□□□□ 0.95
SS18-206ENST00000577572 ANKARQ7Z5J8 1434 aa20.97■□□□□ 0.95
SS18-206ENST00000577572 PER1O15534 1290 aaPredicted RBP20.97■□□□□ 0.95
SS18-206ENST00000577572 PANK3Q9H999 370 aa20.97■□□□□ 0.95
SS18-206ENST00000577572 CCDC61Q9Y6R9 512 aa20.97■□□□□ 0.95
SS18-206ENST00000577572 KTN1Q86UP2 1357 aaKnown RBP20.97■□□□□ 0.95
SS18-206ENST00000577572 ANP32CO43423 234 aa20.96■□□□□ 0.95
SS18-206ENST00000577572 PROSER2Q86WR7 435 aaPredicted RBP20.96■□□□□ 0.95
SS18-206ENST00000577572 CDC42BPGQ6DT37 1551 aa20.96■□□□□ 0.95
SS18-206ENST00000577572 ANKRD36BQ8N2N9 1353 aa20.96■□□□□ 0.95
SS18-206ENST00000577572 TERF2IPQ9NYB0 399 aa20.95■□□□□ 0.94
SS18-206ENST00000577572 MYOM1P52179 1685 aa20.95■□□□□ 0.94
SS18-206ENST00000577572 NPC1L1Q9UHC9 1359 aa20.95■□□□□ 0.94
SS18-206ENST00000577572 NUDT16Q96DE0 195 aaKnown RBP20.94■□□□□ 0.94
SS18-206ENST00000577572 ATP7BP35670 1465 aa20.94■□□□□ 0.94
SS18-206ENST00000577572 TMC1Q8TDI8 760 aa20.93■□□□□ 0.94
SS18-206ENST00000577572 C19orf44Q9H6X5 657 aa20.93■□□□□ 0.94
SS18-206ENST00000577572 DCCP43146 1447 aa20.93■□□□□ 0.94
SS18-206ENST00000577572 SLC12A5Q9H2X9 1139 aa20.92■□□□□ 0.94
SS18-206ENST00000577572 KNSTRNQ9Y448 316 aa20.92■□□□□ 0.94
SS18-206ENST00000577572 PLEKHG3A1L390 1219 aa20.9■□□□□ 0.94
SS18-206ENST00000577572 HDGFL2Q7Z4V5 671 aaPredicted RBP20.9■□□□□ 0.94
SS18-206ENST00000577572 ZNF692Q9BU19 519 aaPredicted RBP20.9■□□□□ 0.94
SS18-206ENST00000577572 TMEM94Q12767 1356 aa20.89■□□□□ 0.93
SS18-206ENST00000577572 AEBP2Q6ZN18 517 aaPredicted RBP20.89■□□□□ 0.93
SS18-206ENST00000577572 PPIP5K1Q6PFW1 1433 aa20.88■□□□□ 0.93
SS18-206ENST00000577572 CABP1Q9NZU7 370 aa20.88■□□□□ 0.93
SS18-206ENST00000577572 RALBP1Q15311 655 aa20.87■□□□□ 0.93
SS18-206ENST00000577572 C14orf37Q86TY3 774 aa20.87■□□□□ 0.93
SS18-206ENST00000577572 PRKRIP1Q9H875 184 aaPredicted RBP20.87■□□□□ 0.93
SS18-206ENST00000577572 NALCNQ8IZF0 1738 aa20.87■□□□□ 0.93
SS18-206ENST00000577572 CPSF1Q10570 1443 aaKnown RBP20.87■□□□□ 0.93
SS18-206ENST00000577572 PRR36Q9H6K5 1346 aa20.86■□□□□ 0.93
SS18-206ENST00000577572 NSD2O96028 1365 aa20.85■□□□□ 0.93
SS18-206ENST00000577572 ZNF335Q9H4Z2 1342 aaPredicted RBP20.85■□□□□ 0.93
SS18-206ENST00000577572 FMN2Q9NZ56 1722 aa20.85■□□□□ 0.93
SS18-206ENST00000577572 CCER2I3L3R5 266 aa20.85■□□□□ 0.93
SS18-206ENST00000577572 AMER1Q5JTC6 1135 aaPredicted RBP20.85■□□□□ 0.93
SS18-206ENST00000577572 MIER1Q8N108 512 aa20.85■□□□□ 0.93
SS18-206ENST00000577572 CARD14Q9BXL6 1004 aa20.85■□□□□ 0.93
SS18-206ENST00000577572 STRCP1A6NGW2 1772 aa20.85■□□□□ 0.93
SS18-206ENST00000577572 LRRC7Q96NW7 1537 aa20.84■□□□□ 0.93
SS18-206ENST00000577572 CD163L1Q9NR16 1453 aa20.84■□□□□ 0.93
SS18-206ENST00000577572 CADPS2Q86UW7 1296 aa20.84■□□□□ 0.93
SS18-206ENST00000577572 A0A1W2PP64 1363 aa20.84■□□□□ 0.93
SS18-206ENST00000577572 BRD4O60885 1362 aaPredicted RBP20.84■□□□□ 0.93
SS18-206ENST00000577572 MSH6P52701 1360 aa20.84■□□□□ 0.93
SS18-206ENST00000577572 TOPAZ1Q8N9V7 1692 aa20.83■□□□□ 0.93
SS18-206ENST00000577572 CGNL1Q0VF96 1302 aa20.83■□□□□ 0.93
SS18-206ENST00000577572 USP32Q8NFA0 1604 aa20.83■□□□□ 0.93
SS18-206ENST00000577572 ITSN1Q15811 1721 aa20.82■□□□□ 0.92
SS18-206ENST00000577572 ATF3P18847 181 aa20.82■□□□□ 0.92
SS18-206ENST00000577572 POLR3AO14802 1390 aaPredicted RBP20.82■□□□□ 0.92
SS18-206ENST00000577572 NSD3Q9BZ95 1437 aa20.81■□□□□ 0.92
SS18-206ENST00000577572 EDC4Q6P2E9 1401 aaKnown RBP20.8■□□□□ 0.92
SS18-206ENST00000577572 PARD3Q8TEW0 1356 aa20.8■□□□□ 0.92
SS18-206ENST00000577572 RBM33Q96EV2 1170 aaKnown RBP20.77■□□□□ 0.92
SS18-206ENST00000577572 ACEP12821 1306 aa20.77■□□□□ 0.91
SS18-206ENST00000577572 PHF8Q9UPP1 1060 aa20.76■□□□□ 0.91
SS18-206ENST00000577572 MYBBP1AQ9BQG0 1328 aaKnown RBP20.75■□□□□ 0.91
SS18-206ENST00000577572 C1orf167Q5SNV9 1468 aa20.75■□□□□ 0.91
SS18-206ENST00000577572 USP6P35125 1406 aa20.74■□□□□ 0.91
SS18-206ENST00000577572 MST1RQ04912 1400 aa20.74■□□□□ 0.91
SS18-206ENST00000577572 NGDNQ8NEJ9 315 aaKnown RBP20.74■□□□□ 0.91
SS18-206ENST00000577572 TTC21AQ8NDW8 1320 aa20.74■□□□□ 0.91
SS18-206ENST00000577572 NUTM2FA1L443 756 aa20.73■□□□□ 0.91
SS18-206ENST00000577572 MON2Q7Z3U7 1717 aa20.73■□□□□ 0.91
SS18-206ENST00000577572 AKAP12Q02952 1782 aa20.72■□□□□ 0.91
SS18-206ENST00000577572 SSH2Q76I76 1423 aa20.72■□□□□ 0.91
SS18-206ENST00000577572 LTBP4Q8N2S1 1624 aa20.72■□□□□ 0.91
SS18-206ENST00000577572 CC2D1BQ5T0F9 858 aaKnown RBP20.72■□□□□ 0.91
SS18-206ENST00000577572 ESCO1Q5FWF5 840 aa20.71■□□□□ 0.91
SS18-206ENST00000577572 KIF1AQ12756 1690 aa20.7■□□□□ 0.91
SS18-206ENST00000577572 XIRP1Q702N8 1843 aaKnown RBP20.7■□□□□ 0.9
SS18-206ENST00000577572 FYB1O15117 783 aa20.7■□□□□ 0.9
SS18-206ENST00000577572 NLRP13Q86W25 1043 aa20.7■□□□□ 0.9
SS18-206ENST00000577572 TTC21BQ7Z4L5 1316 aa20.69■□□□□ 0.9
SS18-206ENST00000577572 SCAF1Q9H7N4 1312 aaKnown RBP20.69■□□□□ 0.9
SS18-206ENST00000577572 MORC1Q86VD1 984 aa20.68■□□□□ 0.9
SS18-206ENST00000577572 PMFBP1Q8TBY8 1022 aa20.68■□□□□ 0.9
SS18-206ENST00000577572 NRKQ7Z2Y5 1582 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms