RNA–Protein interactions for RNA: ENST00000576012.5

SCARF1-209, Transcript of scavenger receptor class F member 1, humanhuman

TSL 2

Gene SCARF1, Length 3,292 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-209ENST00000576012 FAM13BQ9NYF5 915 aa18.26■□□□□ 0.51
SCARF1-209ENST00000576012 TRPM1Q7Z4N2 1603 aa18.26■□□□□ 0.51
SCARF1-209ENST00000576012 ADGBQ8N7X0 1667 aa18.26■□□□□ 0.51
SCARF1-209ENST00000576012 U2SURPO15042 1029 aaKnown RBP18.25■□□□□ 0.51
SCARF1-209ENST00000576012 MTHFSP49914 203 aa18.25■□□□□ 0.51
SCARF1-209ENST00000576012 MVPQ14764 893 aaKnown RBP18.25■□□□□ 0.51
SCARF1-209ENST00000576012 NCBP3Q53F19 620 aaKnown RBP18.25■□□□□ 0.51
SCARF1-209ENST00000576012 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
SCARF1-209ENST00000576012 CD2BP2O95400 341 aaKnown RBP18.24■□□□□ 0.51
SCARF1-209ENST00000576012 INSRP06213 1382 aa18.24■□□□□ 0.51
SCARF1-209ENST00000576012 ZKSCAN2Q63HK3 967 aa18.24■□□□□ 0.51
SCARF1-209ENST00000576012 C1orf115Q9H7X2 142 aa18.23■□□□□ 0.51
SCARF1-209ENST00000576012 RUNDC1Q96C34 613 aa18.23■□□□□ 0.51
SCARF1-209ENST00000576012 TRAK1Q9UPV9 953 aa18.23■□□□□ 0.51
SCARF1-209ENST00000576012 SSFA2P28290 1259 aa18.22■□□□□ 0.51
SCARF1-209ENST00000576012 EXOSC9Q06265 439 aaKnown RBP18.22■□□□□ 0.51
SCARF1-209ENST00000576012 SAFB2Q14151 953 aaKnown RBP eCLIP18.22■□□□□ 0.51
SCARF1-209ENST00000576012 TPRNQ4KMQ1 711 aa18.22■□□□□ 0.51
SCARF1-209ENST00000576012 CDC42BPAQ5VT25 1732 aa18.22■□□□□ 0.51
SCARF1-209ENST00000576012 FOXD4L5Q5VV16 416 aaPredicted RBP18.22■□□□□ 0.51
SCARF1-209ENST00000576012 FOXD4L4Q8WXT5 416 aaPredicted RBP18.22■□□□□ 0.51
SCARF1-209ENST00000576012 R3HCC1Q9Y3T6 440 aaKnown RBP18.22■□□□□ 0.51
SCARF1-209ENST00000576012 DDX49Q9Y6V7 483 aaKnown RBP18.22■□□□□ 0.51
SCARF1-209ENST00000576012 A0A0U1RQG5 324 aaPredicted RBP18.21■□□□□ 0.51
SCARF1-209ENST00000576012 ZCCHC11Q5TAX3 1644 aaKnown RBP18.21■□□□□ 0.5
SCARF1-209ENST00000576012 ASXL1Q8IXJ9 1541 aa18.2■□□□□ 0.5
SCARF1-209ENST00000576012 NASPP49321 788 aaPredicted RBP18.2■□□□□ 0.5
SCARF1-209ENST00000576012 GBP4Q96PP9 640 aa18.2■□□□□ 0.5
SCARF1-209ENST00000576012 TRIM27P14373 513 aa18.2■□□□□ 0.5
SCARF1-209ENST00000576012 MPNDQ8N594 471 aa18.2■□□□□ 0.5
SCARF1-209ENST00000576012 ANP32BQ92688 251 aaKnown RBP18.2■□□□□ 0.5
SCARF1-209ENST00000576012 MSNP26038 577 aaKnown RBP18.19■□□□□ 0.5
SCARF1-209ENST00000576012 NUTM2DQ5VT03 806 aaPredicted RBP18.19■□□□□ 0.5
SCARF1-209ENST00000576012 ZNF692Q9BU19 519 aaPredicted RBP18.19■□□□□ 0.5
SCARF1-209ENST00000576012 NOB1Q9ULX3 412 aaKnown RBP18.19■□□□□ 0.5
SCARF1-209ENST00000576012 PRDM15P57071 1507 aaPredicted RBP18.19■□□□□ 0.5
SCARF1-209ENST00000576012 ARHGAP5Q13017 1502 aa18.19■□□□□ 0.5
SCARF1-209ENST00000576012 CHAMP1Q96JM3 812 aa18.18■□□□□ 0.5
SCARF1-209ENST00000576012 UHRF1BP1LA0JNW5 1464 aa18.18■□□□□ 0.5
SCARF1-209ENST00000576012 ANKRD45Q5TZF3 282 aa18.18■□□□□ 0.5
SCARF1-209ENST00000576012 TMEM57Q8N5G2 664 aa18.18■□□□□ 0.5
SCARF1-209ENST00000576012 SSH1Q8WYL5 1049 aa18.18■□□□□ 0.5
SCARF1-209ENST00000576012 PIK3C2GO75747 1445 aa18.18■□□□□ 0.5
SCARF1-209ENST00000576012 ELL2O00472 640 aaPredicted RBP18.17■□□□□ 0.5
SCARF1-209ENST00000576012 TTC37Q6PGP7 1564 aa18.17■□□□□ 0.5
SCARF1-209ENST00000576012 XPCQ01831 940 aaPredicted RBP18.16■□□□□ 0.5
SCARF1-209ENST00000576012 TMEM132EQ6IEE7 984 aa18.16■□□□□ 0.5
SCARF1-209ENST00000576012 MCTP1Q6DN14 999 aa18.16■□□□□ 0.5
SCARF1-209ENST00000576012 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.16■□□□□ 0.5
SCARF1-209ENST00000576012 CAVIN1Q6NZI2 390 aaKnown RBP18.15■□□□□ 0.5
SCARF1-209ENST00000576012 NPM1P06748 294 aaKnown RBP eCLIP18.15■□□□□ 0.5
SCARF1-209ENST00000576012 APBB1O00213 710 aa18.14■□□□□ 0.49
SCARF1-209ENST00000576012 SYCP2Q9BX26 1530 aa18.14■□□□□ 0.49
SCARF1-209ENST00000576012 GAS2L2Q8NHY3 880 aa18.14■□□□□ 0.49
SCARF1-209ENST00000576012 ADGRF5Q8IZF2 1346 aa18.14■□□□□ 0.49
SCARF1-209ENST00000576012 CCDC141Q6ZP82 1450 aa18.14■□□□□ 0.49
SCARF1-209ENST00000576012 CROCC2H7BZ55 1655 aa18.13■□□□□ 0.49
SCARF1-209ENST00000576012 PRDM10Q9NQV6 1147 aa18.13■□□□□ 0.49
SCARF1-209ENST00000576012 KIF3BO15066 747 aa18.11■□□□□ 0.49
SCARF1-209ENST00000576012 FOXD4L6Q3SYB3 417 aaPredicted RBP18.11■□□□□ 0.49
SCARF1-209ENST00000576012 FOXD4L3Q6VB84 417 aaPredicted RBP18.11■□□□□ 0.49
SCARF1-209ENST00000576012 CFAP53Q96M91 514 aa18.11■□□□□ 0.49
SCARF1-209ENST00000576012 PREX2Q70Z35 1606 aa18.11■□□□□ 0.49
SCARF1-209ENST00000576012 CDC42BPBQ9Y5S2 1711 aa18.11■□□□□ 0.49
SCARF1-209ENST00000576012 GOLGA6L22H0YM25 854 aa18.11■□□□□ 0.49
SCARF1-209ENST00000576012 RBM27Q9P2N5 1060 aaKnown RBP18.11■□□□□ 0.49
SCARF1-209ENST00000576012 NSD3Q9BZ95 1437 aa18.1■□□□□ 0.49
SCARF1-209ENST00000576012 RAB3GAP1Q15042 981 aa18.1■□□□□ 0.49
SCARF1-209ENST00000576012 ATF7IPQ6VMQ6 1270 aa18.1■□□□□ 0.49
SCARF1-209ENST00000576012 RNF214Q8ND24 703 aa18.1■□□□□ 0.49
SCARF1-209ENST00000576012 PKP1Q13835 747 aa18.1■□□□□ 0.49
SCARF1-209ENST00000576012 ZSCAN30Q86W11 494 aa18.1■□□□□ 0.49
SCARF1-209ENST00000576012 DDX19BQ9UMR2 479 aa18.1■□□□□ 0.49
SCARF1-209ENST00000576012 NINLQ9Y2I6 1382 aa18.09■□□□□ 0.49
SCARF1-209ENST00000576012 SHANK2Q9UPX8 1470 aa18.09■□□□□ 0.49
SCARF1-209ENST00000576012 TPM2P07951 284 aa18.09■□□□□ 0.49
SCARF1-209ENST00000576012 SAMD9LQ8IVG5 1584 aa18.09■□□□□ 0.49
SCARF1-209ENST00000576012 WDR63Q8IWG1 891 aa18.09■□□□□ 0.49
SCARF1-209ENST00000576012 PDCL3Q9H2J4 239 aa18.09■□□□□ 0.49
SCARF1-209ENST00000576012 RTEL1-TNFRSF6BF6WH68 1400 aa18.09■□□□□ 0.49
SCARF1-209ENST00000576012 BCL11BQ9C0K0 894 aaPredicted RBP18.08■□□□□ 0.48
SCARF1-209ENST00000576012 SCAF11Q99590 1463 aaKnown RBP18.08■□□□□ 0.48
SCARF1-209ENST00000576012 CHD1LQ86WJ1 897 aa18.08■□□□□ 0.48
SCARF1-209ENST00000576012 EFCAB2Q5VUJ9 269 aa18.07■□□□□ 0.48
SCARF1-209ENST00000576012 MYO5CQ9NQX4 1742 aa18.07■□□□□ 0.48
SCARF1-209ENST00000576012 K7ELQ4 463 aaPredicted RBP18.07■□□□□ 0.48
SCARF1-209ENST00000576012 SPAG9O60271 1321 aaKnown RBP18.07■□□□□ 0.48
SCARF1-209ENST00000576012 RIPK4P57078 832 aa18.07■□□□□ 0.48
SCARF1-209ENST00000576012 CCDC173Q0VFZ6 552 aa18.07■□□□□ 0.48
SCARF1-209ENST00000576012 RSPH4AQ5TD94 716 aa18.07■□□□□ 0.48
SCARF1-209ENST00000576012 FGD1P98174 961 aa18.06■□□□□ 0.48
SCARF1-209ENST00000576012 BAG4O95429 457 aaKnown RBP18.06■□□□□ 0.48
SCARF1-209ENST00000576012 CALD1Q05682 793 aaKnown RBP18.06■□□□□ 0.48
SCARF1-209ENST00000576012 TBC1D9Q6ZT07 1266 aa18.06■□□□□ 0.48
SCARF1-209ENST00000576012 SMC5Q8IY18 1101 aa18.06■□□□□ 0.48
SCARF1-209ENST00000576012 JARID2Q92833 1246 aaPredicted RBP18.06■□□□□ 0.48
SCARF1-209ENST00000576012 GGNBP2Q9H3C7 697 aa18.06■□□□□ 0.48
SCARF1-209ENST00000576012 PRPF40AO75400 957 aaKnown RBP18.05■□□□□ 0.48
SCARF1-209ENST00000576012 SKOR2Q2VWA4 1001 aaPredicted RBP18.05■□□□□ 0.48
SCARF1-209ENST00000576012 ASXL2Q76L83 1435 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms