RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 PTCH1Q13635 1447 aa12.16□□□□□ -0.46
NUP88-211ENST00000575976 KNDC1Q76NI1 1749 aa12.15□□□□□ -0.46
NUP88-211ENST00000575976 DLC1Q96QB1 1528 aa12.15□□□□□ -0.46
NUP88-211ENST00000575976 FAM135BQ49AJ0 1406 aa12.14□□□□□ -0.47
NUP88-211ENST00000575976 SAFB2Q14151 953 aaKnown RBP eCLIP12.14□□□□□ -0.47
NUP88-211ENST00000575976 POGKQ9P215 609 aa12.14□□□□□ -0.47
NUP88-211ENST00000575976 ZEB1P37275 1124 aaPredicted RBP12.13□□□□□ -0.47
NUP88-211ENST00000575976 C14orf37Q86TY3 774 aa12.13□□□□□ -0.47
NUP88-211ENST00000575976 NCOA3Q9Y6Q9 1424 aa12.12□□□□□ -0.47
NUP88-211ENST00000575976 XIRP1Q702N8 1843 aaKnown RBP12.11□□□□□ -0.47
NUP88-211ENST00000575976 ARHGEF28Q8N1W1 1705 aaKnown RBP12.11□□□□□ -0.47
NUP88-211ENST00000575976 CENPJQ9HC77 1338 aaPredicted RBP12.11□□□□□ -0.47
NUP88-211ENST00000575976 C19orf44Q9H6X5 657 aa12.1□□□□□ -0.47
NUP88-211ENST00000575976 MINK1Q8N4C8 1332 aaPredicted RBP12.1□□□□□ -0.47
NUP88-211ENST00000575976 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.09□□□□□ -0.47
NUP88-211ENST00000575976 MSH6P52701 1360 aa12.09□□□□□ -0.47
NUP88-211ENST00000575976 EIF3AQ14152 1382 aaKnown RBP12.09□□□□□ -0.47
NUP88-211ENST00000575976 USP47Q96K76 1375 aa12.09□□□□□ -0.47
NUP88-211ENST00000575976 ST20-MTHFSA0A0A6YYL1 179 aa12.09□□□□□ -0.47
NUP88-211ENST00000575976 HIRIP3Q9BW71 556 aaPredicted RBP12.09□□□□□ -0.47
NUP88-211ENST00000575976 ADGRL3Q9HAR2 1447 aa12.09□□□□□ -0.47
NUP88-211ENST00000575976 HSPA5P11021 654 aaKnown RBP12.07□□□□□ -0.48
NUP88-211ENST00000575976 ATF3P18847 181 aa12.07□□□□□ -0.48
NUP88-211ENST00000575976 EIF4G2P78344 907 aaKnown RBP eCLIP12.07□□□□□ -0.48
NUP88-211ENST00000575976 POTEAQ6S8J7 498 aa12.07□□□□□ -0.48
NUP88-211ENST00000575976 NALCNQ8IZF0 1738 aa12.07□□□□□ -0.48
NUP88-211ENST00000575976 CADPS2Q86UW7 1296 aa12.06□□□□□ -0.48
NUP88-211ENST00000575976 NUTM2FA1L443 756 aa12.05□□□□□ -0.48
NUP88-211ENST00000575976 WASLO00401 505 aaPredicted RBP12.05□□□□□ -0.48
NUP88-211ENST00000575976 TESK2Q96S53 571 aa12.05□□□□□ -0.48
NUP88-211ENST00000575976 DCCP43146 1447 aa12.04□□□□□ -0.48
NUP88-211ENST00000575976 QRICH2Q9H0J4 1663 aa12.04□□□□□ -0.48
NUP88-211ENST00000575976 CDK19Q9BWU1 502 aa12.04□□□□□ -0.48
NUP88-211ENST00000575976 SBNO2Q9Y2G9 1366 aa12.04□□□□□ -0.48
NUP88-211ENST00000575976 ADGRB2O60241 1585 aa12.03□□□□□ -0.48
NUP88-211ENST00000575976 CDC42BPGQ6DT37 1551 aa12.03□□□□□ -0.48
NUP88-211ENST00000575976 MST1RQ04912 1400 aa12.03□□□□□ -0.48
NUP88-211ENST00000575976 CABP2Q9NPB3 220 aa12.02□□□□□ -0.49
NUP88-211ENST00000575976 SLAIN2Q9P270 581 aa12.02□□□□□ -0.49
NUP88-211ENST00000575976 EVC2Q86UK5 1308 aa12.02□□□□□ -0.49
NUP88-211ENST00000575976 TULP4Q9NRJ4 1543 aa12.01□□□□□ -0.49
NUP88-211ENST00000575976 SRCAPQ6ZRS2 3230 aa12.01□□□□□ -0.49
NUP88-211ENST00000575976 SRPK2P78362 688 aaKnown RBP12.01□□□□□ -0.49
NUP88-211ENST00000575976 PRR36Q9H6K5 1346 aa12.01□□□□□ -0.49
NUP88-211ENST00000575976 C1orf167Q5SNV9 1468 aa12.01□□□□□ -0.49
NUP88-211ENST00000575976 SLC24A1O60721 1099 aa12□□□□□ -0.49
NUP88-211ENST00000575976 TMF1P82094 1093 aa12□□□□□ -0.49
NUP88-211ENST00000575976 ORAI2Q96SN7 254 aa12□□□□□ -0.49
NUP88-211ENST00000575976 FMN2Q9NZ56 1722 aa12□□□□□ -0.49
NUP88-211ENST00000575976 ESCO1Q5FWF5 840 aa11.99□□□□□ -0.49
NUP88-211ENST00000575976 NUDT16Q96DE0 195 aaKnown RBP11.99□□□□□ -0.49
NUP88-211ENST00000575976 ANKARQ7Z5J8 1434 aa11.98□□□□□ -0.49
NUP88-211ENST00000575976 BRINP3Q76B58 766 aa11.98□□□□□ -0.49
NUP88-211ENST00000575976 C11orf95C9JLR9 678 aaPredicted RBP11.97□□□□□ -0.49
NUP88-211ENST00000575976 CCDC61Q9Y6R9 512 aa11.97□□□□□ -0.49
NUP88-211ENST00000575976 USP32Q8NFA0 1604 aa11.97□□□□□ -0.49
NUP88-211ENST00000575976 ATP7BP35670 1465 aa11.96□□□□□ -0.49
NUP88-211ENST00000575976 PMFBP1Q8TBY8 1022 aa11.96□□□□□ -0.49
NUP88-211ENST00000575976 PUS7Q96PZ0 661 aaKnown RBP11.96□□□□□ -0.49
NUP88-211ENST00000575976 PHF8Q9UPP1 1060 aa11.96□□□□□ -0.49
NUP88-211ENST00000575976 UPF1Q92900 1129 aaKnown RBP eCLIP11.95□□□□□ -0.5
NUP88-211ENST00000575976 CABP1Q9NZU7 370 aa11.95□□□□□ -0.5
NUP88-211ENST00000575976 ATAD2Q6PL18 1390 aa11.94□□□□□ -0.5
NUP88-211ENST00000575976 FOXO3O43524 673 aa11.94□□□□□ -0.5
NUP88-211ENST00000575976 CDCA8Q53HL2 280 aa11.94□□□□□ -0.5
NUP88-211ENST00000575976 DDX17Q92841 729 aaKnown RBP11.94□□□□□ -0.5
NUP88-211ENST00000575976 POLR3GLQ9BT43 218 aa11.94□□□□□ -0.5
NUP88-211ENST00000575976 RGPD8O14715 1765 aaPredicted RBP11.94□□□□□ -0.5
NUP88-211ENST00000575976 PPIP5K1Q6PFW1 1433 aa11.94□□□□□ -0.5
NUP88-211ENST00000575976 ROBO1Q9Y6N7 1651 aa11.94□□□□□ -0.5
NUP88-211ENST00000575976 PLEKHG3A1L390 1219 aa11.93□□□□□ -0.5
NUP88-211ENST00000575976 TMC1Q8TDI8 760 aa11.93□□□□□ -0.5
NUP88-211ENST00000575976 SLC12A5Q9H2X9 1139 aa11.92□□□□□ -0.5
NUP88-211ENST00000575976 ACEP12821 1306 aa11.91□□□□□ -0.5
NUP88-211ENST00000575976 XPCQ01831 940 aaPredicted RBP11.91□□□□□ -0.5
NUP88-211ENST00000575976 NGDNQ8NEJ9 315 aaKnown RBP11.91□□□□□ -0.5
NUP88-211ENST00000575976 TOPAZ1Q8N9V7 1692 aa11.91□□□□□ -0.5
NUP88-211ENST00000575976 KIF7Q2M1P5 1343 aa11.9□□□□□ -0.5
NUP88-211ENST00000575976 NPHP3Q7Z494 1330 aa11.9□□□□□ -0.5
NUP88-211ENST00000575976 ZNF772Q68DY9 489 aaPredicted RBP11.9□□□□□ -0.5
NUP88-211ENST00000575976 KRT28Q7Z3Y7 464 aa11.9□□□□□ -0.5
NUP88-211ENST00000575976 WASHC2AQ641Q2 1341 aa11.89□□□□□ -0.51
NUP88-211ENST00000575976 ITSN1Q15811 1721 aa11.89□□□□□ -0.51
NUP88-211ENST00000575976 PSME1Q06323 249 aa11.89□□□□□ -0.51
NUP88-211ENST00000575976 KIF1AQ12756 1690 aa11.89□□□□□ -0.51
NUP88-211ENST00000575976 POLR3AO14802 1390 aaPredicted RBP11.89□□□□□ -0.51
NUP88-211ENST00000575976 CCDC7Q96M83 1385 aa11.89□□□□□ -0.51
NUP88-211ENST00000575976 SOS2Q07890 1332 aaPredicted RBP11.88□□□□□ -0.51
NUP88-211ENST00000575976 AHDC1Q5TGY3 1603 aaPredicted RBP11.88□□□□□ -0.51
NUP88-211ENST00000575976 JCADQ9P266 1359 aa11.88□□□□□ -0.51
NUP88-211ENST00000575976 NHSL1Q5SYE7 1610 aa11.87□□□□□ -0.51
NUP88-211ENST00000575976 HDGFL2Q7Z4V5 671 aaPredicted RBP11.87□□□□□ -0.51
NUP88-211ENST00000575976 ZNF692Q9BU19 519 aaPredicted RBP11.87□□□□□ -0.51
NUP88-211ENST00000575976 NINLQ9Y2I6 1382 aa11.87□□□□□ -0.51
NUP88-211ENST00000575976 CD163L1Q9NR16 1453 aa11.87□□□□□ -0.51
NUP88-211ENST00000575976 CPSF1Q10570 1443 aaKnown RBP11.86□□□□□ -0.51
NUP88-211ENST00000575976 MEX3CQ5U5Q3 659 aaKnown RBP11.86□□□□□ -0.51
NUP88-211ENST00000575976 TERF2IPQ9NYB0 399 aa11.86□□□□□ -0.51
NUP88-211ENST00000575976 PXDNQ92626 1479 aa11.86□□□□□ -0.51
NUP88-211ENST00000575976 A0A1W2PP64 1363 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms