RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 PRAM1Q96QH2 718 aa13.62□□□□□ -0.23
CCDC40-214ENST00000575431 SLAIN2Q9P270 581 aa13.62□□□□□ -0.23
CCDC40-214ENST00000575431 GPRASP1Q5JY77 1395 aa13.61□□□□□ -0.23
CCDC40-214ENST00000575431 CDC42BPGQ6DT37 1551 aa13.61□□□□□ -0.23
CCDC40-214ENST00000575431 RALGAPBQ86X10 1494 aa13.61□□□□□ -0.23
CCDC40-214ENST00000575431 ARHGEF28Q8N1W1 1705 aaKnown RBP13.6□□□□□ -0.23
CCDC40-214ENST00000575431 EIF3AQ14152 1382 aaKnown RBP13.59□□□□□ -0.23
CCDC40-214ENST00000575431 PLEKHH1Q9ULM0 1364 aa13.59□□□□□ -0.23
CCDC40-214ENST00000575431 PIP4K2BP78356 416 aa13.59□□□□□ -0.23
CCDC40-214ENST00000575431 ILDR1Q86SU0 546 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-214ENST00000575431 SCAF1Q9H7N4 1312 aaKnown RBP13.59□□□□□ -0.23
CCDC40-214ENST00000575431 CARD11Q9BXL7 1154 aa13.58□□□□□ -0.24
CCDC40-214ENST00000575431 ADGRB2O60241 1585 aa13.57□□□□□ -0.24
CCDC40-214ENST00000575431 MST1RQ04912 1400 aa13.56□□□□□ -0.24
CCDC40-214ENST00000575431 SAFB2Q14151 953 aaKnown RBP eCLIP13.56□□□□□ -0.24
CCDC40-214ENST00000575431 CENPJQ9HC77 1338 aaPredicted RBP13.56□□□□□ -0.24
CCDC40-214ENST00000575431 ROBO1Q9Y6N7 1651 aa13.54□□□□□ -0.24
CCDC40-214ENST00000575431 FMN2Q9NZ56 1722 aa13.54□□□□□ -0.24
CCDC40-214ENST00000575431 SLC24A1O60721 1099 aa13.54□□□□□ -0.24
CCDC40-214ENST00000575431 C1orf167Q5SNV9 1468 aa13.54□□□□□ -0.24
CCDC40-214ENST00000575431 WASLO00401 505 aaPredicted RBP13.53□□□□□ -0.24
CCDC40-214ENST00000575431 MINK1Q8N4C8 1332 aaPredicted RBP13.53□□□□□ -0.24
CCDC40-214ENST00000575431 ANKARQ7Z5J8 1434 aa13.53□□□□□ -0.24
CCDC40-214ENST00000575431 BRINP3Q76B58 766 aa13.52□□□□□ -0.25
CCDC40-214ENST00000575431 QRICH2Q9H0J4 1663 aa13.51□□□□□ -0.25
CCDC40-214ENST00000575431 SBNO2Q9Y2G9 1366 aa13.51□□□□□ -0.25
CCDC40-214ENST00000575431 ESCO1Q5FWF5 840 aa13.5□□□□□ -0.25
CCDC40-214ENST00000575431 HIRIP3Q9BW71 556 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-214ENST00000575431 TULP4Q9NRJ4 1543 aa13.49□□□□□ -0.25
CCDC40-214ENST00000575431 EVC2Q86UK5 1308 aa13.49□□□□□ -0.25
CCDC40-214ENST00000575431 HSPA1LP34931 641 aa13.49□□□□□ -0.25
CCDC40-214ENST00000575431 AHDC1Q5TGY3 1603 aaPredicted RBP13.49□□□□□ -0.25
CCDC40-214ENST00000575431 KIF1AQ12756 1690 aa13.48□□□□□ -0.25
CCDC40-214ENST00000575431 ORAI2Q96SN7 254 aa13.48□□□□□ -0.25
CCDC40-214ENST00000575431 CDK19Q9BWU1 502 aa13.48□□□□□ -0.25
CCDC40-214ENST00000575431 NPHP3Q7Z494 1330 aa13.47□□□□□ -0.25
CCDC40-214ENST00000575431 NUTM2FA1L443 756 aa13.47□□□□□ -0.25
CCDC40-214ENST00000575431 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
CCDC40-214ENST00000575431 NHSL1Q5SYE7 1610 aa13.46□□□□□ -0.25
CCDC40-214ENST00000575431 USP47Q96K76 1375 aa13.46□□□□□ -0.25
CCDC40-214ENST00000575431 SRPK2P78362 688 aaKnown RBP13.46□□□□□ -0.25
CCDC40-214ENST00000575431 NUDT16Q96DE0 195 aaKnown RBP13.46□□□□□ -0.25
CCDC40-214ENST00000575431 PHF8Q9UPP1 1060 aa13.46□□□□□ -0.25
CCDC40-214ENST00000575431 CCDC61Q9Y6R9 512 aa13.46□□□□□ -0.25
CCDC40-214ENST00000575431 ITSN1Q15811 1721 aa13.46□□□□□ -0.25
CCDC40-214ENST00000575431 RGPD8O14715 1765 aaPredicted RBP13.45□□□□□ -0.26
CCDC40-214ENST00000575431 LRRC59Q96AG4 307 aaKnown RBP13.45□□□□□ -0.26
CCDC40-214ENST00000575431 PUS7Q96PZ0 661 aaKnown RBP13.45□□□□□ -0.26
CCDC40-214ENST00000575431 USP32Q8NFA0 1604 aa13.45□□□□□ -0.26
CCDC40-214ENST00000575431 ST20-MTHFSA0A0A6YYL1 179 aa13.44□□□□□ -0.26
CCDC40-214ENST00000575431 SOS2Q07890 1332 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-214ENST00000575431 PRR36Q9H6K5 1346 aa13.43□□□□□ -0.26
CCDC40-214ENST00000575431 ATP7BP35670 1465 aa13.43□□□□□ -0.26
CCDC40-214ENST00000575431 COL16A1Q07092 1604 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-214ENST00000575431 FOXO3O43524 673 aa13.43□□□□□ -0.26
CCDC40-214ENST00000575431 EIF4G2P78344 907 aaKnown RBP eCLIP13.43□□□□□ -0.26
CCDC40-214ENST00000575431 PSME1Q06323 249 aa13.43□□□□□ -0.26
CCDC40-214ENST00000575431 ATAD2Q6PL18 1390 aa13.42□□□□□ -0.26
CCDC40-214ENST00000575431 JCADQ9P266 1359 aa13.42□□□□□ -0.26
CCDC40-214ENST00000575431 PLEKHG3A1L390 1219 aa13.41□□□□□ -0.26
CCDC40-214ENST00000575431 TMF1P82094 1093 aa13.41□□□□□ -0.26
CCDC40-214ENST00000575431 CDCA8Q53HL2 280 aa13.41□□□□□ -0.26
CCDC40-214ENST00000575431 TESK2Q96S53 571 aa13.41□□□□□ -0.26
CCDC40-214ENST00000575431 CABP2Q9NPB3 220 aa13.41□□□□□ -0.26
CCDC40-214ENST00000575431 TOPAZ1Q8N9V7 1692 aa13.4□□□□□ -0.26
CCDC40-214ENST00000575431 NGDNQ8NEJ9 315 aaKnown RBP13.4□□□□□ -0.26
CCDC40-214ENST00000575431 PMFBP1Q8TBY8 1022 aa13.4□□□□□ -0.26
CCDC40-214ENST00000575431 KRT28Q7Z3Y7 464 aa13.39□□□□□ -0.27
CCDC40-214ENST00000575431 PXDNQ92626 1479 aa13.39□□□□□ -0.27
CCDC40-214ENST00000575431 PPIP5K1Q6PFW1 1433 aa13.39□□□□□ -0.27
CCDC40-214ENST00000575431 SPATA31A6Q5VVP1 1343 aa13.39□□□□□ -0.27
CCDC40-214ENST00000575431 SHPRHQ149N8 1683 aa13.38□□□□□ -0.27
CCDC40-214ENST00000575431 SBNO1A3KN83 1393 aa13.38□□□□□ -0.27
CCDC40-214ENST00000575431 POLR3AO14802 1390 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-214ENST00000575431 BRD4O60885 1362 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-214ENST00000575431 DDX17Q92841 729 aaKnown RBP13.38□□□□□ -0.27
CCDC40-214ENST00000575431 NINLQ9Y2I6 1382 aa13.37□□□□□ -0.27
CCDC40-214ENST00000575431 ZEB1P37275 1124 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-214ENST00000575431 ZNF692Q9BU19 519 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-214ENST00000575431 ACEP12821 1306 aa13.37□□□□□ -0.27
CCDC40-214ENST00000575431 CABP1Q9NZU7 370 aa13.36□□□□□ -0.27
CCDC40-214ENST00000575431 SPATA31A3Q5VYP0 1347 aa13.36□□□□□ -0.27
CCDC40-214ENST00000575431 HSPA5P11021 654 aaKnown RBP13.35□□□□□ -0.27
CCDC40-214ENST00000575431 ARHGEF10O15013 1369 aa13.34□□□□□ -0.27
CCDC40-214ENST00000575431 PNPLA6Q8IY17 1366 aa13.34□□□□□ -0.27
CCDC40-214ENST00000575431 XPCQ01831 940 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-214ENST00000575431 TNS3Q68CZ2 1445 aa13.33□□□□□ -0.28
CCDC40-214ENST00000575431 COL22A1Q8NFW1 1626 aaPredicted RBP13.33□□□□□ -0.28
CCDC40-214ENST00000575431 TERF2IPQ9NYB0 399 aa13.33□□□□□ -0.28
CCDC40-214ENST00000575431 TMC1Q8TDI8 760 aa13.32□□□□□ -0.28
CCDC40-214ENST00000575431 TRPM3Q9HCF6 1732 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-214ENST00000575431 DISP3Q9P2K9 1392 aa13.32□□□□□ -0.28
CCDC40-214ENST00000575431 PAK3O75914 559 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-214ENST00000575431 HDGFL2Q7Z4V5 671 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-214ENST00000575431 USP6P35125 1406 aa13.3□□□□□ -0.28
CCDC40-214ENST00000575431 CPSF1Q10570 1443 aaKnown RBP13.3□□□□□ -0.28
CCDC40-214ENST00000575431 AKAP12Q02952 1782 aa13.3□□□□□ -0.28
CCDC40-214ENST00000575431 SLC12A5Q9H2X9 1139 aa13.3□□□□□ -0.28
CCDC40-214ENST00000575431 ALS2Q96Q42 1657 aa13.29□□□□□ -0.28
CCDC40-214ENST00000575431 LMOD2Q6P5Q4 547 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms