RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 KIF20BQ96Q89 1820 aa9.05□□□□□ -0.96
SMG6-217ENST00000575338 TULP4Q9NRJ4 1543 aa9.05□□□□□ -0.96
SMG6-217ENST00000575338 TMEM132EQ6IEE7 984 aa9.04□□□□□ -0.96
SMG6-217ENST00000575338 POGKQ9P215 609 aa9.04□□□□□ -0.96
SMG6-217ENST00000575338 NSD3Q9BZ95 1437 aa9.04□□□□□ -0.96
SMG6-217ENST00000575338 C3P01024 1663 aa9.04□□□□□ -0.96
SMG6-217ENST00000575338 MED14O60244 1454 aa9.03□□□□□ -0.96
SMG6-217ENST00000575338 POLR3AO14802 1390 aaPredicted RBP9.03□□□□□ -0.96
SMG6-217ENST00000575338 MLECQ14165 292 aa9.03□□□□□ -0.96
SMG6-217ENST00000575338 FBXO31Q5XUX0 539 aaPredicted RBP9.03□□□□□ -0.96
SMG6-217ENST00000575338 TERF2IPQ9NYB0 399 aa9.03□□□□□ -0.96
SMG6-217ENST00000575338 NRXN3Q9Y4C0 1643 aa9.02□□□□□ -0.96
SMG6-217ENST00000575338 ABCC11Q96J66 1382 aa9.02□□□□□ -0.97
SMG6-217ENST00000575338 CPS1P31327 1500 aa9.02□□□□□ -0.97
SMG6-217ENST00000575338 SIRT1Q96EB6 747 aa9.02□□□□□ -0.97
SMG6-217ENST00000575338 CFAP53Q96M91 514 aa9.02□□□□□ -0.97
SMG6-217ENST00000575338 PPP4R2Q9NY27 417 aa9.02□□□□□ -0.97
SMG6-217ENST00000575338 FAM135BQ49AJ0 1406 aa9.02□□□□□ -0.97
SMG6-217ENST00000575338 SRPK2P78362 688 aaKnown RBP9.01□□□□□ -0.97
SMG6-217ENST00000575338 DIP2AQ14689 1571 aa9.01□□□□□ -0.97
SMG6-217ENST00000575338 ITSN1Q15811 1721 aa9.01□□□□□ -0.97
SMG6-217ENST00000575338 HDGFL2Q7Z4V5 671 aaPredicted RBP9.01□□□□□ -0.97
SMG6-217ENST00000575338 MORC1Q86VD1 984 aa9.01□□□□□ -0.97
SMG6-217ENST00000575338 ATP7BP35670 1465 aa9.01□□□□□ -0.97
SMG6-217ENST00000575338 TECPR2O15040 1411 aa9□□□□□ -0.97
SMG6-217ENST00000575338 NUTM2DQ5VT03 806 aaPredicted RBP9□□□□□ -0.97
SMG6-217ENST00000575338 PRAM1Q96QH2 718 aa8.99□□□□□ -0.97
SMG6-217ENST00000575338 EID1Q9Y6B2 187 aa8.99□□□□□ -0.97
SMG6-217ENST00000575338 RNF123Q5XPI4 1314 aa8.99□□□□□ -0.97
SMG6-217ENST00000575338 TMEM2Q9UHN6 1383 aa8.99□□□□□ -0.97
SMG6-217ENST00000575338 SHPRHQ149N8 1683 aa8.98□□□□□ -0.97
SMG6-217ENST00000575338 NCBP3Q53F19 620 aaKnown RBP8.98□□□□□ -0.97
SMG6-217ENST00000575338 CARD14Q9BXL6 1004 aa8.98□□□□□ -0.97
SMG6-217ENST00000575338 PNNQ9H307 717 aaKnown RBP8.98□□□□□ -0.97
SMG6-217ENST00000575338 STK26Q9P289 416 aa8.98□□□□□ -0.97
SMG6-217ENST00000575338 SLIT1O75093 1534 aa8.98□□□□□ -0.97
SMG6-217ENST00000575338 ADGRB2O60241 1585 aa8.98□□□□□ -0.97
SMG6-217ENST00000575338 PLEKHG1Q9ULL1 1385 aa8.98□□□□□ -0.97
SMG6-217ENST00000575338 AKAP12Q02952 1782 aa8.97□□□□□ -0.97
SMG6-217ENST00000575338 BCANQ96GW7 911 aa8.97□□□□□ -0.97
SMG6-217ENST00000575338 SLC12A5Q9H2X9 1139 aa8.97□□□□□ -0.97
SMG6-217ENST00000575338 ADAMTS8Q9UP79 889 aa8.97□□□□□ -0.97
SMG6-217ENST00000575338 MON2Q7Z3U7 1717 aa8.97□□□□□ -0.97
SMG6-217ENST00000575338 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.96□□□□□ -0.98
SMG6-217ENST00000575338 CABP2Q9NPB3 220 aa8.96□□□□□ -0.98
SMG6-217ENST00000575338 RCAN3Q9UKA8 241 aa8.96□□□□□ -0.98
SMG6-217ENST00000575338 RIMS1Q86UR5 1692 aaKnown RBP8.96□□□□□ -0.98
SMG6-217ENST00000575338 A0A1W2PP64 1363 aa8.96□□□□□ -0.98
SMG6-217ENST00000575338 SETD1BQ9UPS6 1966 aaKnown RBP8.95□□□□□ -0.98
SMG6-217ENST00000575338 GOLGA2Q08379 1002 aa8.95□□□□□ -0.98
SMG6-217ENST00000575338 CDK19Q9BWU1 502 aa8.95□□□□□ -0.98
SMG6-217ENST00000575338 MINK1Q8N4C8 1332 aaPredicted RBP8.95□□□□□ -0.98
SMG6-217ENST00000575338 ARHGAP23Q9P227 1491 aa8.95□□□□□ -0.98
SMG6-217ENST00000575338 CDC42BPGQ6DT37 1551 aa8.95□□□□□ -0.98
SMG6-217ENST00000575338 ZNF142P52746 1687 aaPredicted RBP8.94□□□□□ -0.98
SMG6-217ENST00000575338 SAFB2Q14151 953 aaKnown RBP eCLIP8.94□□□□□ -0.98
SMG6-217ENST00000575338 THEMISQ8N1K5 641 aaPredicted RBP8.94□□□□□ -0.98
SMG6-217ENST00000575338 WASLO00401 505 aaPredicted RBP8.93□□□□□ -0.98
SMG6-217ENST00000575338 RRP1P56182 461 aaKnown RBP8.93□□□□□ -0.98
SMG6-217ENST00000575338 EDC4Q6P2E9 1401 aaKnown RBP8.93□□□□□ -0.98
SMG6-217ENST00000575338 TOPAZ1Q8N9V7 1692 aa8.93□□□□□ -0.98
SMG6-217ENST00000575338 MAP2P11137 1827 aaKnown RBP8.93□□□□□ -0.98
SMG6-217ENST00000575338 CEP170BQ9Y4F5 1589 aaPredicted RBP8.92□□□□□ -0.98
SMG6-217ENST00000575338 CD163L1Q9NR16 1453 aa8.92□□□□□ -0.98
SMG6-217ENST00000575338 PIK3R4Q99570 1358 aa8.92□□□□□ -0.98
SMG6-217ENST00000575338 E9PSI1 815 aa8.92□□□□□ -0.98
SMG6-217ENST00000575338 NEFMP07197 916 aa8.92□□□□□ -0.98
SMG6-217ENST00000575338 RUNDC1Q96C34 613 aa8.92□□□□□ -0.98
SMG6-217ENST00000575338 ZNF692Q9BU19 519 aaPredicted RBP8.92□□□□□ -0.98
SMG6-217ENST00000575338 NKTRP30414 1462 aaKnown RBP8.91□□□□□ -0.98
SMG6-217ENST00000575338 PTCH1Q13635 1447 aa8.91□□□□□ -0.98
SMG6-217ENST00000575338 PPIP5K1Q6PFW1 1433 aa8.91□□□□□ -0.98
SMG6-217ENST00000575338 ADAMTS13Q76LX8 1427 aa8.91□□□□□ -0.98
SMG6-217ENST00000575338 MTHFSP49914 203 aa8.91□□□□□ -0.98
SMG6-217ENST00000575338 TXNDC2Q86VQ3 553 aa8.91□□□□□ -0.98
SMG6-217ENST00000575338 CCDC136Q96JN2 1154 aa8.91□□□□□ -0.98
SMG6-217ENST00000575338 CCDC61Q9Y6R9 512 aa8.91□□□□□ -0.98
SMG6-217ENST00000575338 CPSF1Q10570 1443 aaKnown RBP8.9□□□□□ -0.98
SMG6-217ENST00000575338 METP08581 1390 aa8.9□□□□□ -0.98
SMG6-217ENST00000575338 ZNF521Q96K83 1311 aa8.9□□□□□ -0.98
SMG6-217ENST00000575338 IRX6P78412 446 aaPredicted RBP8.9□□□□□ -0.98
SMG6-217ENST00000575338 CCDC27Q2M243 656 aa8.9□□□□□ -0.98
SMG6-217ENST00000575338 TBX22Q9Y458 520 aa8.9□□□□□ -0.98
SMG6-217ENST00000575338 SALL2Q9Y467 1007 aaPredicted RBP8.9□□□□□ -0.98
SMG6-217ENST00000575338 XRN1Q8IZH2 1706 aaKnown RBP8.89□□□□□ -0.99
SMG6-217ENST00000575338 ADAMTSL3P82987 1691 aa8.89□□□□□ -0.99
SMG6-217ENST00000575338 APAF1O14727 1248 aa8.89□□□□□ -0.99
SMG6-217ENST00000575338 WDR63Q8IWG1 891 aa8.89□□□□□ -0.99
SMG6-217ENST00000575338 CABP1Q9NZU7 370 aa8.89□□□□□ -0.99
SMG6-217ENST00000575338 IQSEC2Q5JU85 1478 aa8.89□□□□□ -0.99
SMG6-217ENST00000575338 PLEKHH1Q9ULM0 1364 aa8.88□□□□□ -0.99
SMG6-217ENST00000575338 MAPK8IP3Q9UPT6 1336 aa8.88□□□□□ -0.99
SMG6-217ENST00000575338 NRKQ7Z2Y5 1582 aa8.88□□□□□ -0.99
SMG6-217ENST00000575338 FYB1O15117 783 aa8.88□□□□□ -0.99
SMG6-217ENST00000575338 SLFN5Q08AF3 891 aa8.88□□□□□ -0.99
SMG6-217ENST00000575338 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.88□□□□□ -0.99
SMG6-217ENST00000575338 AATKQ6ZMQ8 1374 aa8.87□□□□□ -0.99
SMG6-217ENST00000575338 CHD2O14647 1828 aaKnown RBP8.87□□□□□ -0.99
SMG6-217ENST00000575338 CT47B1P0C2W7 299 aaPredicted RBP8.87□□□□□ -0.99
SMG6-217ENST00000575338 TNNT2P45379 298 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms