RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 ZMYM3Q14202 1370 aa18.66■□□□□ 0.58
VPS33B-208ENST00000574755 PRAM1Q96QH2 718 aa18.66■□□□□ 0.58
VPS33B-208ENST00000574755 POGKQ9P215 609 aa18.66■□□□□ 0.58
VPS33B-208ENST00000574755 RIMS2Q9UQ26 1411 aa18.65■□□□□ 0.58
VPS33B-208ENST00000574755 MORC1Q86VD1 984 aa18.65■□□□□ 0.58
VPS33B-208ENST00000574755 ANKRD36BQ8N2N9 1353 aa18.65■□□□□ 0.58
VPS33B-208ENST00000574755 SRPK2P78362 688 aaKnown RBP18.64■□□□□ 0.58
VPS33B-208ENST00000574755 B4GALNT3Q6L9W6 998 aa18.64■□□□□ 0.57
VPS33B-208ENST00000574755 RCAN3Q9UKA8 241 aa18.64■□□□□ 0.57
VPS33B-208ENST00000574755 CGNL1Q0VF96 1302 aa18.64■□□□□ 0.57
VPS33B-208ENST00000574755 MINK1Q8N4C8 1332 aaPredicted RBP18.63■□□□□ 0.57
VPS33B-208ENST00000574755 TNNT2P45379 298 aaPredicted RBP18.61■□□□□ 0.57
VPS33B-208ENST00000574755 NINLQ9Y2I6 1382 aa18.61■□□□□ 0.57
VPS33B-208ENST00000574755 POLR3AO14802 1390 aaPredicted RBP18.6■□□□□ 0.57
VPS33B-208ENST00000574755 SETD1AO15047 1707 aaKnown RBP18.6■□□□□ 0.57
VPS33B-208ENST00000574755 PLEKHH1Q9ULM0 1364 aa18.6■□□□□ 0.57
VPS33B-208ENST00000574755 RRP1P56182 461 aaKnown RBP18.6■□□□□ 0.57
VPS33B-208ENST00000574755 CCDC146Q8IYE0 955 aa18.6■□□□□ 0.57
VPS33B-208ENST00000574755 ATAD2Q6PL18 1390 aa18.59■□□□□ 0.57
VPS33B-208ENST00000574755 NSD2O96028 1365 aa18.58■□□□□ 0.56
VPS33B-208ENST00000574755 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.57■□□□□ 0.56
VPS33B-208ENST00000574755 A0A1W2PP64 1363 aa18.57■□□□□ 0.56
VPS33B-208ENST00000574755 TNRQ92752 1358 aa18.57■□□□□ 0.56
VPS33B-208ENST00000574755 DLC1Q96QB1 1528 aa18.56■□□□□ 0.56
VPS33B-208ENST00000574755 NRXN3Q9Y4C0 1643 aa18.55■□□□□ 0.56
VPS33B-208ENST00000574755 SHPRHQ149N8 1683 aa18.55■□□□□ 0.56
VPS33B-208ENST00000574755 ZNF521Q96K83 1311 aa18.55■□□□□ 0.56
VPS33B-208ENST00000574755 APAF1O14727 1248 aa18.54■□□□□ 0.56
VPS33B-208ENST00000574755 ABCC11Q96J66 1382 aa18.54■□□□□ 0.56
VPS33B-208ENST00000574755 GOLGA2Q08379 1002 aa18.54■□□□□ 0.56
VPS33B-208ENST00000574755 CCDC136Q96JN2 1154 aa18.54■□□□□ 0.56
VPS33B-208ENST00000574755 CDK19Q9BWU1 502 aa18.54■□□□□ 0.56
VPS33B-208ENST00000574755 TERF2IPQ9NYB0 399 aa18.54■□□□□ 0.56
VPS33B-208ENST00000574755 HDGFP51858 240 aaKnown RBP18.53■□□□□ 0.56
VPS33B-208ENST00000574755 MTHFSP49914 203 aa18.53■□□□□ 0.56
VPS33B-208ENST00000574755 WAPLQ7Z5K2 1190 aa18.53■□□□□ 0.56
VPS33B-208ENST00000574755 UBR1Q8IWV7 1749 aa18.53■□□□□ 0.56
VPS33B-208ENST00000574755 CFAP53Q96M91 514 aa18.51■□□□□ 0.55
VPS33B-208ENST00000574755 CD163L1Q9NR16 1453 aa18.51■□□□□ 0.55
VPS33B-208ENST00000574755 DUSP27Q5VZP5 1158 aa18.5■□□□□ 0.55
VPS33B-208ENST00000574755 METP08581 1390 aa18.5■□□□□ 0.55
VPS33B-208ENST00000574755 HDGFL2Q7Z4V5 671 aaPredicted RBP18.49■□□□□ 0.55
VPS33B-208ENST00000574755 GGNBP2Q9H3C7 697 aa18.48■□□□□ 0.55
VPS33B-208ENST00000574755 TMEM2Q9UHN6 1383 aa18.48■□□□□ 0.55
VPS33B-208ENST00000574755 ANKRD26Q9UPS8 1709 aa18.48■□□□□ 0.55
VPS33B-208ENST00000574755 NGEFQ8N5V2 710 aa18.48■□□□□ 0.55
VPS33B-208ENST00000574755 CABP1Q9NZU7 370 aa18.48■□□□□ 0.55
VPS33B-208ENST00000574755 SLFN5Q08AF3 891 aa18.47■□□□□ 0.55
VPS33B-208ENST00000574755 EXOC6Q8TAG9 804 aa18.47■□□□□ 0.55
VPS33B-208ENST00000574755 RBM19Q9Y4C8 960 aaKnown RBP18.47■□□□□ 0.55
VPS33B-208ENST00000574755 KNDC1Q76NI1 1749 aa18.46■□□□□ 0.55
VPS33B-208ENST00000574755 PLIN1O60240 522 aa18.46■□□□□ 0.55
VPS33B-208ENST00000574755 FYB1O15117 783 aa18.45■□□□□ 0.54
VPS33B-208ENST00000574755 TXNDC2Q86VQ3 553 aa18.45■□□□□ 0.54
VPS33B-208ENST00000574755 CEBPAP49715 358 aaPredicted RBP18.45■□□□□ 0.54
VPS33B-208ENST00000574755 KIF20BQ96Q89 1820 aa18.45■□□□□ 0.54
VPS33B-208ENST00000574755 MED14O60244 1454 aa18.44■□□□□ 0.54
VPS33B-208ENST00000574755 NLRP1Q9C000 1473 aa18.44■□□□□ 0.54
VPS33B-208ENST00000574755 RUNDC1Q96C34 613 aa18.44■□□□□ 0.54
VPS33B-208ENST00000574755 TRHP20396 242 aaPredicted RBP18.43■□□□□ 0.54
VPS33B-208ENST00000574755 C3P01024 1663 aa18.43■□□□□ 0.54
VPS33B-208ENST00000574755 ATP7BP35670 1465 aa18.43■□□□□ 0.54
VPS33B-208ENST00000574755 E9PSI1 815 aa18.42■□□□□ 0.54
VPS33B-208ENST00000574755 TRMT2AQ8IZ69 625 aaKnown RBP18.42■□□□□ 0.54
VPS33B-208ENST00000574755 SPINK5Q9NQ38 1064 aaPredicted RBP18.42■□□□□ 0.54
VPS33B-208ENST00000574755 FER1L4A9Z1Z3 1794 aa18.42■□□□□ 0.54
VPS33B-208ENST00000574755 WASLO00401 505 aaPredicted RBP18.42■□□□□ 0.54
VPS33B-208ENST00000574755 TECPR2O15040 1411 aa18.42■□□□□ 0.54
VPS33B-208ENST00000574755 FAM135BQ49AJ0 1406 aa18.42■□□□□ 0.54
VPS33B-208ENST00000574755 CPS1P31327 1500 aa18.42■□□□□ 0.54
VPS33B-208ENST00000574755 NKTRP30414 1462 aaKnown RBP18.41■□□□□ 0.54
VPS33B-208ENST00000574755 NEUROD2Q15784 382 aa18.41■□□□□ 0.54
VPS33B-208ENST00000574755 WWC1Q8IX03 1113 aa18.41■□□□□ 0.54
VPS33B-208ENST00000574755 IQSEC2Q5JU85 1478 aa18.4■□□□□ 0.54
VPS33B-208ENST00000574755 U2AF1L5P0DN76 240 aaPredicted RBP18.4■□□□□ 0.54
VPS33B-208ENST00000574755 U2AF1Q01081 240 aaKnown RBP eCLIP18.4■□□□□ 0.54
VPS33B-208ENST00000574755 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
VPS33B-208ENST00000574755 TCP11L2Q8N4U5 519 aa18.4■□□□□ 0.54
VPS33B-208ENST00000574755 SIRT1Q96EB6 747 aa18.39■□□□□ 0.53
VPS33B-208ENST00000574755 DMRT2Q9Y5R5 561 aa18.39■□□□□ 0.53
VPS33B-208ENST00000574755 PPIP5K1Q6PFW1 1433 aa18.39■□□□□ 0.53
VPS33B-208ENST00000574755 ADAMTS13Q76LX8 1427 aa18.39■□□□□ 0.53
VPS33B-208ENST00000574755 RRP7AQ9Y3A4 280 aaKnown RBP18.39■□□□□ 0.53
VPS33B-208ENST00000574755 LTKP29376 864 aa18.38■□□□□ 0.53
VPS33B-208ENST00000574755 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.38■□□□□ 0.53
VPS33B-208ENST00000574755 PLEKHG1Q9ULL1 1385 aa18.38■□□□□ 0.53
VPS33B-208ENST00000574755 CRBNQ96SW2 442 aa18.37■□□□□ 0.53
VPS33B-208ENST00000574755 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.37■□□□□ 0.53
VPS33B-208ENST00000574755 EID1Q9Y6B2 187 aa18.36■□□□□ 0.53
VPS33B-208ENST00000574755 COL3A1P02461 1466 aaPredicted RBP18.36■□□□□ 0.53
VPS33B-208ENST00000574755 U2SURPO15042 1029 aaKnown RBP18.35■□□□□ 0.53
VPS33B-208ENST00000574755 C20orf194Q5TEA3 1177 aa18.35■□□□□ 0.53
VPS33B-208ENST00000574755 NUDT16Q96DE0 195 aaKnown RBP18.35■□□□□ 0.53
VPS33B-208ENST00000574755 CPSF1Q10570 1443 aaKnown RBP18.34■□□□□ 0.53
VPS33B-208ENST00000574755 ROBO2Q9HCK4 1378 aa18.34■□□□□ 0.53
VPS33B-208ENST00000574755 EDC4Q6P2E9 1401 aaKnown RBP18.33■□□□□ 0.53
VPS33B-208ENST00000574755 CCDC61Q9Y6R9 512 aa18.33■□□□□ 0.53
VPS33B-208ENST00000574755 PHF23Q9BUL5 403 aaPredicted RBP18.33■□□□□ 0.52
VPS33B-208ENST00000574755 ADGRB2O60241 1585 aa18.33■□□□□ 0.52
VPS33B-208ENST00000574755 CDC42BPGQ6DT37 1551 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 158.9 ms