RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 UCN2Q96RP3 112 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.34□□□□□ -1.87
CHD3-217ENST00000574022 USP35Q9P2H5 1018 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 TSKSQ9UJT2 592 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 PNMA3Q9UL41 463 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 PCDHGC3Q9UN70 934 aa3.34□□□□□ -1.87
CHD3-217ENST00000574022 MAFBQ9Y5Q3 323 aaPredicted RBP3.34□□□□□ -1.87
CHD3-217ENST00000574022 POTEFA5A3E0 1075 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 C3orf80F5H4A9 247 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 ATP9BO43861 1147 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 NUDT7P0C024 238 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 EIF4G2P78344 907 aaKnown RBP eCLIP3.33□□□□□ -1.88
CHD3-217ENST00000574022 EVX2Q03828 476 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 TBC1D9Q6ZT07 1266 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 EPS8L1Q8TE68 723 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 DCBLD2Q96PD2 775 aa3.33□□□□□ -1.88
CHD3-217ENST00000574022 RBM47A0AV96 593 aaKnown RBP3.32□□□□□ -1.88
CHD3-217ENST00000574022 UNCXA6NJT0 531 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 TRIM6-TRIM34B2RNG4 842 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 CFAP99D6REC4 459 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 C6orf229H3BNL8 230 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 PTPREP23469 700 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 GUCA2AQ02747 115 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 ELOAQ14241 798 aaKnown RBP3.32□□□□□ -1.88
CHD3-217ENST00000574022 GRIPAP1Q4V328 841 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 ARSIQ5FYB1 569 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 SLF2Q8IX21 1173 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 KHSRPQ92945 711 aaKnown RBP eCLIP3.32□□□□□ -1.88
CHD3-217ENST00000574022 HLA-CQ95604 372 aa3.32□□□□□ -1.88
CHD3-217ENST00000574022 PPP1R3GB7ZBB8 358 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 SMAPO00193 183 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 HMGB1P09429 215 aaKnown RBP3.31□□□□□ -1.88
CHD3-217ENST00000574022 ERCC3P19447 782 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 ARID4AP29374 1257 aaPredicted RBP3.31□□□□□ -1.88
CHD3-217ENST00000574022 NR6A1Q15406 480 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 PPP4R3BQ5MIZ7 849 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 KANK4Q5T7N3 995 aaPredicted RBP3.31□□□□□ -1.88
CHD3-217ENST00000574022 TXNDC2Q86VQ3 553 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 BCL2L12Q9HB09 334 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 METRNQ9UJH8 293 aa3.31□□□□□ -1.88
CHD3-217ENST00000574022 PSDA5PKW4 1024 aaPredicted RBP3.3□□□□□ -1.88
CHD3-217ENST00000574022 GABBR2O75899 941 aa3.3□□□□□ -1.88
CHD3-217ENST00000574022 SLC10A3P09131 477 aa3.3□□□□□ -1.88
CHD3-217ENST00000574022 HDGFP51858 240 aaKnown RBP3.3□□□□□ -1.88
CHD3-217ENST00000574022 DOK7Q18PE1 504 aa3.3□□□□□ -1.88
CHD3-217ENST00000574022 TMEM164Q5U3C3 297 aa3.3□□□□□ -1.88
CHD3-217ENST00000574022 STK32AQ8WU08 396 aa3.3□□□□□ -1.88
CHD3-217ENST00000574022 NOVA2Q9UNW9 492 aaKnown RBP3.3□□□□□ -1.88
CHD3-217ENST00000574022 LHX6Q9UPM6 363 aa3.3□□□□□ -1.88
CHD3-217ENST00000574022 RIMBP2O15034 1052 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 SKIP12755 728 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 SSFA2P28290 1259 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 SLC4A3P48751 1232 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 NR1H3Q13133 447 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 PHLDB3Q6NSJ2 640 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 NFATC2IPQ8NCF5 419 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 MRRFQ96E11 262 aaKnown RBP3.29□□□□□ -1.88
CHD3-217ENST00000574022 SIRT1Q96EB6 747 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 ZSWIM6Q9HCJ5 1215 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 IGSF5Q9NSI5 407 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 ZMIZ1Q9ULJ6 1067 aa3.29□□□□□ -1.88
CHD3-217ENST00000574022 USP17L3A6NCW0 530 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 USP17L4A6NCW7 530 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 ZBBXA8MT70 800 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 PER1O15534 1290 aaPredicted RBP3.28□□□□□ -1.88
CHD3-217ENST00000574022 FUT2Q10981 343 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 PROX2Q3B8N5 592 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 SWT1Q5T5J6 900 aaKnown RBP3.28□□□□□ -1.88
CHD3-217ENST00000574022 GPR153Q6NV75 609 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 LARP1Q6PKG0 1096 aaKnown RBP3.28□□□□□ -1.88
CHD3-217ENST00000574022 USP17L2Q6R6M4 530 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 DNAJC14Q6Y2X3 702 aaPredicted RBP3.28□□□□□ -1.88
CHD3-217ENST00000574022 USP17L1Q7RTZ2 530 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 FAM200AQ8TCP9 573 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 SYMPKQ92797 1274 aaKnown RBP3.28□□□□□ -1.88
CHD3-217ENST00000574022 BCL2L13Q9BXK5 485 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 KIAA1522Q9P206 1035 aaPredicted RBP3.28□□□□□ -1.88
CHD3-217ENST00000574022 KIAA1468Q9P260 1216 aa3.28□□□□□ -1.88
CHD3-217ENST00000574022 SOWAHDA6NJG2 315 aa3.27□□□□□ -1.89
CHD3-217ENST00000574022 FAM196BA6NMK8 535 aa3.27□□□□□ -1.89
CHD3-217ENST00000574022 PIK3CDO00329 1044 aa3.27□□□□□ -1.89
CHD3-217ENST00000574022 HSP90B1P14625 803 aaKnown RBP3.27□□□□□ -1.89
CHD3-217ENST00000574022 HOXB3P14651 431 aaPredicted RBP3.27□□□□□ -1.89
CHD3-217ENST00000574022 ZNF16P17020 682 aaPredicted RBP3.27□□□□□ -1.89
CHD3-217ENST00000574022 RASA1P20936 1047 aa3.27□□□□□ -1.89
CHD3-217ENST00000574022 ATP6V1AP38606 617 aa3.27□□□□□ -1.89
CHD3-217ENST00000574022 MARSP56192 900 aaKnown RBP3.27□□□□□ -1.89
CHD3-217ENST00000574022 PLEKHM2Q8IWE5 1019 aa3.27□□□□□ -1.89
CHD3-217ENST00000574022 PUS7Q96PZ0 661 aaKnown RBP3.27□□□□□ -1.89
CHD3-217ENST00000574022 CDCA7Q9BWT1 371 aaPredicted RBP3.27□□□□□ -1.89
CHD3-217ENST00000574022 MKRN1Q9UHC7 482 aaKnown RBP3.27□□□□□ -1.89
CHD3-217ENST00000574022 USP17L5A8MUK1 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L15C9J2P7 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L10C9JJH3 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L13C9JLJ4 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L12C9JPN9 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L11C9JVI0 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L21D6R901 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L18D6R9N7 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L22D6RA61 530 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms