RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 KNDC1Q76NI1 1749 aa18.12■□□□□ 0.49
CCDC40-210ENST00000573903 ADAMTS2O95450 1211 aa18.12■□□□□ 0.49
CCDC40-210ENST00000573903 NGLY1Q96IV0 654 aa18.12■□□□□ 0.49
CCDC40-210ENST00000573903 SPATA31E1Q6ZUB1 1445 aa18.12■□□□□ 0.49
CCDC40-210ENST00000573903 UPF1Q92900 1129 aaKnown RBP eCLIP18.11■□□□□ 0.49
CCDC40-210ENST00000573903 STK26Q9P289 416 aa18.11■□□□□ 0.49
CCDC40-210ENST00000573903 NPHP3Q7Z494 1330 aa18.11■□□□□ 0.49
CCDC40-210ENST00000573903 TECPR2O15040 1411 aa18.1■□□□□ 0.49
CCDC40-210ENST00000573903 LRPPRCP42704 1394 aaKnown RBP18.1■□□□□ 0.49
CCDC40-210ENST00000573903 RBM6P78332 1123 aaKnown RBP18.1■□□□□ 0.49
CCDC40-210ENST00000573903 ESCO1Q5FWF5 840 aa18.1■□□□□ 0.49
CCDC40-210ENST00000573903 QTRT2Q9H974 415 aaKnown RBP18.1■□□□□ 0.49
CCDC40-210ENST00000573903 COL22A1Q8NFW1 1626 aaPredicted RBP18.09■□□□□ 0.49
CCDC40-210ENST00000573903 PIK3C2GO75747 1445 aa18.08■□□□□ 0.49
CCDC40-210ENST00000573903 RGS12O14924 1447 aa18.07■□□□□ 0.48
CCDC40-210ENST00000573903 ABCC11Q96J66 1382 aa18.06■□□□□ 0.48
CCDC40-210ENST00000573903 WAPLQ7Z5K2 1190 aa18.05■□□□□ 0.48
CCDC40-210ENST00000573903 USP21Q9UK80 565 aa18.05■□□□□ 0.48
CCDC40-210ENST00000573903 FMN2Q9NZ56 1722 aa18.05■□□□□ 0.48
CCDC40-210ENST00000573903 KIF1AQ12756 1690 aa18.05■□□□□ 0.48
CCDC40-210ENST00000573903 YTHDC2Q9H6S0 1430 aaKnown RBP18.05■□□□□ 0.48
CCDC40-210ENST00000573903 PXDNQ92626 1479 aa18.04■□□□□ 0.48
CCDC40-210ENST00000573903 NUTM2FA1L443 756 aa18.04■□□□□ 0.48
CCDC40-210ENST00000573903 TMEM132EQ6IEE7 984 aa18.04■□□□□ 0.48
CCDC40-210ENST00000573903 TRPC5Q9UL62 973 aaPredicted RBP18.04■□□□□ 0.48
CCDC40-210ENST00000573903 MARF1Q9Y4F3 1742 aaKnown RBP18.03■□□□□ 0.48
CCDC40-210ENST00000573903 FOXO3O43524 673 aa18.03■□□□□ 0.48
CCDC40-210ENST00000573903 MYOM2P54296 1465 aa18.02■□□□□ 0.48
CCDC40-210ENST00000573903 PLEKHH1Q9ULM0 1364 aa18.02■□□□□ 0.47
CCDC40-210ENST00000573903 XPCQ01831 940 aaPredicted RBP18.01■□□□□ 0.47
CCDC40-210ENST00000573903 DHX57Q6P158 1386 aaKnown RBP18.01■□□□□ 0.47
CCDC40-210ENST00000573903 FNBP4Q8N3X1 1017 aaPredicted RBP18■□□□□ 0.47
CCDC40-210ENST00000573903 ATAD2Q6PL18 1390 aa17.99■□□□□ 0.47
CCDC40-210ENST00000573903 SIRT1Q96EB6 747 aa17.98■□□□□ 0.47
CCDC40-210ENST00000573903 C14orf93Q9H972 538 aaKnown RBP17.98■□□□□ 0.47
CCDC40-210ENST00000573903 NRXN1Q9ULB1 1477 aa17.98■□□□□ 0.47
CCDC40-210ENST00000573903 ATRNO75882 1429 aa17.98■□□□□ 0.47
CCDC40-210ENST00000573903 RAB3GAP2Q9H2M9 1393 aa17.97■□□□□ 0.47
CCDC40-210ENST00000573903 RGPD8O14715 1765 aaPredicted RBP17.95■□□□□ 0.46
CCDC40-210ENST00000573903 CFAP70Q5T0N1 1121 aa17.95■□□□□ 0.46
CCDC40-210ENST00000573903 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.95■□□□□ 0.46
CCDC40-210ENST00000573903 HAP1P54257 671 aaPredicted RBP17.94■□□□□ 0.46
CCDC40-210ENST00000573903 SPATA31A3Q5VYP0 1347 aa17.94■□□□□ 0.46
CCDC40-210ENST00000573903 PSME1Q06323 249 aa17.93■□□□□ 0.46
CCDC40-210ENST00000573903 KRT28Q7Z3Y7 464 aa17.93■□□□□ 0.46
CCDC40-210ENST00000573903 POGKQ9P215 609 aa17.93■□□□□ 0.46
CCDC40-210ENST00000573903 PHF8Q9UPP1 1060 aa17.93■□□□□ 0.46
CCDC40-210ENST00000573903 DLC1Q96QB1 1528 aa17.93■□□□□ 0.46
CCDC40-210ENST00000573903 USP32Q8NFA0 1604 aa17.92■□□□□ 0.46
CCDC40-210ENST00000573903 SAFB2Q14151 953 aaKnown RBP eCLIP17.92■□□□□ 0.46
CCDC40-210ENST00000573903 PRAM1Q96QH2 718 aa17.92■□□□□ 0.46
CCDC40-210ENST00000573903 BCL9LQ86UU0 1499 aa17.92■□□□□ 0.46
CCDC40-210ENST00000573903 TNS3Q68CZ2 1445 aa17.91■□□□□ 0.46
CCDC40-210ENST00000573903 ADGRB2O60241 1585 aa17.89■□□□□ 0.45
CCDC40-210ENST00000573903 GJD4Q96KN9 370 aaPredicted RBP17.89■□□□□ 0.45
CCDC40-210ENST00000573903 ANKARQ7Z5J8 1434 aa17.89■□□□□ 0.45
CCDC40-210ENST00000573903 ARHGEF10O15013 1369 aa17.88■□□□□ 0.45
CCDC40-210ENST00000573903 EIF3AQ14152 1382 aaKnown RBP17.88■□□□□ 0.45
CCDC40-210ENST00000573903 SLIT2O94813 1529 aa17.88■□□□□ 0.45
CCDC40-210ENST00000573903 LMOD2Q6P5Q4 547 aa17.87■□□□□ 0.45
CCDC40-210ENST00000573903 UNC5CLQ8IV45 518 aa17.87■□□□□ 0.45
CCDC40-210ENST00000573903 SBNO1A3KN83 1393 aa17.87■□□□□ 0.45
CCDC40-210ENST00000573903 ADGRB1O14514 1584 aa17.87■□□□□ 0.45
CCDC40-210ENST00000573903 ABCA3Q99758 1704 aa17.86■□□□□ 0.45
CCDC40-210ENST00000573903 PLEKHG5O94827 1062 aa17.85■□□□□ 0.45
CCDC40-210ENST00000573903 PLCH1Q4KWH8 1693 aa17.85■□□□□ 0.45
CCDC40-210ENST00000573903 NWD2Q9ULI1 1742 aa17.85■□□□□ 0.45
CCDC40-210ENST00000573903 TRAK1Q9UPV9 953 aa17.85■□□□□ 0.45
CCDC40-210ENST00000573903 KDM2AQ9Y2K7 1162 aa17.85■□□□□ 0.45
CCDC40-210ENST00000573903 GLI3P10071 1580 aa17.84■□□□□ 0.45
CCDC40-210ENST00000573903 RALGAPBQ86X10 1494 aa17.84■□□□□ 0.45
CCDC40-210ENST00000573903 CCDC125Q86Z20 511 aa17.84■□□□□ 0.45
CCDC40-210ENST00000573903 PMFBP1Q8TBY8 1022 aa17.84■□□□□ 0.45
CCDC40-210ENST00000573903 DCAF11Q8TEB1 546 aa17.84■□□□□ 0.45
CCDC40-210ENST00000573903 STAC3Q96MF2 364 aa17.84■□□□□ 0.45
CCDC40-210ENST00000573903 GPRASP1Q5JY77 1395 aa17.82■□□□□ 0.44
CCDC40-210ENST00000573903 MINK1Q8N4C8 1332 aaPredicted RBP17.82■□□□□ 0.44
CCDC40-210ENST00000573903 CABLES1Q8TDN4 633 aa17.82■□□□□ 0.44
CCDC40-210ENST00000573903 HIRIP3Q9BW71 556 aaPredicted RBP17.82■□□□□ 0.44
CCDC40-210ENST00000573903 CCDC9Q9Y3X0 531 aaKnown RBP17.82■□□□□ 0.44
CCDC40-210ENST00000573903 TULP4Q9NRJ4 1543 aa17.82■□□□□ 0.44
CCDC40-210ENST00000573903 ITSN1Q15811 1721 aa17.8■□□□□ 0.44
CCDC40-210ENST00000573903 TRPM3Q9HCF6 1732 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-210ENST00000573903 HRCP23327 699 aa17.79■□□□□ 0.44
CCDC40-210ENST00000573903 VPS72Q15906 364 aa17.79■□□□□ 0.44
CCDC40-210ENST00000573903 ZRANB1Q9UGI0 708 aa17.79■□□□□ 0.44
CCDC40-210ENST00000573903 ARHGEF28Q8N1W1 1705 aaKnown RBP17.78■□□□□ 0.44
CCDC40-210ENST00000573903 BRWD3Q6RI45 1802 aa17.78■□□□□ 0.44
CCDC40-210ENST00000573903 ALS2Q96Q42 1657 aa17.77■□□□□ 0.44
CCDC40-210ENST00000573903 WASLO00401 505 aaPredicted RBP17.77■□□□□ 0.44
CCDC40-210ENST00000573903 BLMP54132 1417 aaPredicted RBP17.76■□□□□ 0.43
CCDC40-210ENST00000573903 SF3B2Q13435 895 aaKnown RBP17.76■□□□□ 0.43
CCDC40-210ENST00000573903 NGDNQ8NEJ9 315 aaKnown RBP17.76■□□□□ 0.43
CCDC40-210ENST00000573903 A0A0G2JS52 829 aa17.75■□□□□ 0.43
CCDC40-210ENST00000573903 MYT1Q01538 1121 aa17.75■□□□□ 0.43
CCDC40-210ENST00000573903 SEPT12Q8IYM1 358 aa17.75■□□□□ 0.43
CCDC40-210ENST00000573903 COL14A1Q05707 1796 aaKnown RBP17.75■□□□□ 0.43
CCDC40-210ENST00000573903 PRR36Q9H6K5 1346 aa17.74■□□□□ 0.43
CCDC40-210ENST00000573903 EP400Q96L91 3159 aa17.74■□□□□ 0.43
CCDC40-210ENST00000573903 NRAPQ86VF7 1730 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms