RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 SLC52A1Q9NWF4 448 aa6.9□□□□□ -1.3
TOPBP1-210ENST00000572787 CUEDC1Q9NWM3 386 aaPredicted RBP6.9□□□□□ -1.3
TOPBP1-210ENST00000572787 TBC1D2BQ9UPU7 963 aa6.9□□□□□ -1.3
TOPBP1-210ENST00000572787 PALM3A6NDB9 673 aaPredicted RBP6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 FAM205CA6NFA0 338 aa6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 GRXCR2A6NFK2 248 aa6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 ARID4AP29374 1257 aaPredicted RBP6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 IGBP1P78318 339 aa6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 NOM1Q5C9Z4 860 aaKnown RBP6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 C3orf67Q6ZVT6 689 aa6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 HS3ST6Q96QI5 342 aa6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 CDCA7Q9BWT1 371 aaPredicted RBP6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.89□□□□□ -1.311e-6■■■■□ 23.6
TOPBP1-210ENST00000572787 SBNO2Q9Y2G9 1366 aa6.89□□□□□ -1.31
TOPBP1-210ENST00000572787 TLDC2A0PJX2 215 aa6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 CENPBP07199 599 aaPredicted RBP6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 ERCC5P28715 1186 aaPredicted RBP6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 FOSBP53539 338 aa6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 KRTAP3-3Q9BYR6 98 aa6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 KRTAP3-2Q9BYR7 98 aa6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 PCDHB8Q9UN66 801 aa6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.88□□□□□ -1.31
TOPBP1-210ENST00000572787 MDM2Q00987 491 aaPredicted RBP6.87□□□□□ -1.31
TOPBP1-210ENST00000572787 DIXDC1Q155Q3 683 aa6.87□□□□□ -1.31
TOPBP1-210ENST00000572787 EMILIN3Q9NT22 766 aa6.87□□□□□ -1.31
TOPBP1-210ENST00000572787 hCG_2014768A0A024R1R8 64 aa6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 ANKRD33BA6NCL7 494 aa6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 SOWAHDA6NJG2 315 aa6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 RECKO95980 971 aa6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 SPTY2D1Q68D10 685 aaPredicted RBP6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 LARGE2Q8N3Y3 721 aa6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 LNPKQ9C0E8 428 aa6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 UBA5Q9GZZ9 404 aa6.86□□□□□ -1.31
TOPBP1-210ENST00000572787 IBSPP21815 317 aaPredicted RBP6.85□□□□□ -1.31
TOPBP1-210ENST00000572787 OSBPP22059 807 aa6.85□□□□□ -1.31
TOPBP1-210ENST00000572787 PTPROQ16827 1216 aa6.85□□□□□ -1.31
TOPBP1-210ENST00000572787 CDCA8Q53HL2 280 aa6.85□□□□□ -1.31
TOPBP1-210ENST00000572787 SMC5Q8IY18 1101 aa6.85□□□□□ -1.31
TOPBP1-210ENST00000572787 PKNOX2Q96KN3 472 aa6.85□□□□□ -1.31
TOPBP1-210ENST00000572787 RALBP1Q15311 655 aa6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 EGFLAMQ63HQ2 1017 aa6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 SDE2Q6IQ49 451 aa6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 KCNB2Q92953 911 aa6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 NAP1L5Q96NT1 182 aaPredicted RBP6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 TANGO6Q9C0B7 1094 aa6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 CABP2Q9NPB3 220 aa6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 GPHNQ9NQX3 736 aaPredicted RBP6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 TFIP11Q9UBB9 837 aaKnown RBP6.84□□□□□ -1.31
TOPBP1-210ENST00000572787 POTEB3A0JP26 581 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 EIF3JO75822 258 aaKnown RBP6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 PTGDRQ13258 359 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 ELOAQ14241 798 aaKnown RBP6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 HSP90AB2PQ58FF8 381 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 POTEBQ6S5H4 581 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 GPATCH3Q96I76 525 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 L3MBTL3Q96JM7 780 aaPredicted RBP6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 CCDC136Q96JN2 1154 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 BRINP2Q9C0B6 783 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 FAM217BQ9NTX9 383 aaPredicted RBP6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 KLHL42Q9P2K6 505 aa6.83□□□□□ -1.32
TOPBP1-210ENST00000572787 MAP4K4O95819 1239 aaPredicted RBP6.82□□□□□ -1.32
TOPBP1-210ENST00000572787 TSNAXIP1Q2TAA8 658 aa6.82□□□□□ -1.32
TOPBP1-210ENST00000572787 DNAJC2Q99543 621 aaKnown RBP6.82□□□□□ -1.32
TOPBP1-210ENST00000572787 TERF2IPQ9NYB0 399 aa6.82□□□□□ -1.32
TOPBP1-210ENST00000572787 NDUFB9Q9Y6M9 179 aa6.82□□□□□ -1.32
TOPBP1-210ENST00000572787 GOLGA2Q08379 1002 aa6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 RTL5Q5HYW3 569 aaPredicted RBP6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 FBXO31Q5XUX0 539 aaPredicted RBP6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 PHLDB3Q6NSJ2 640 aa6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 APBB1IPQ7Z5R6 666 aaPredicted RBP6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 GPATCH11Q8N954 259 aa6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 ZCRB1Q8TBF4 217 aaKnown RBP6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 PIK3R5Q8WYR1 880 aa6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 SPACA7Q96KW9 195 aa6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 ALG2Q9H553 416 aa6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 LAS1LQ9Y4W2 734 aaKnown RBP6.81□□□□□ -1.32
TOPBP1-210ENST00000572787 CCDC194A0A1B0GVG4 234 aa6.8□□□□□ -1.32
TOPBP1-210ENST00000572787 PEX14O75381 377 aa6.8□□□□□ -1.32
TOPBP1-210ENST00000572787 TUSC1Q2TAM9 212 aa6.8□□□□□ -1.32
TOPBP1-210ENST00000572787 FBXO33Q7Z6M2 555 aa6.8□□□□□ -1.32
TOPBP1-210ENST00000572787 ARMC5Q96C12 935 aa6.8□□□□□ -1.32
TOPBP1-210ENST00000572787 BIN2Q9UBW5 565 aaPredicted RBP6.8□□□□□ -1.32
TOPBP1-210ENST00000572787 MAFBQ9Y5Q3 323 aaPredicted RBP6.8□□□□□ -1.32
TOPBP1-210ENST00000572787 SCAMP3O14828 347 aaKnown RBP6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 PARNO95453 639 aaKnown RBP6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 PSME1Q06323 249 aa6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 CCDC144BQ3MJ40 725 aa6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 ZNF710Q8N1W2 664 aa6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 RNF166Q96A37 237 aaPredicted RBP6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 MS4A4AQ96JQ5 239 aa6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 NOP58Q9Y2X3 529 aaKnown RBP6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 TBX22Q9Y458 520 aa6.79□□□□□ -1.32
TOPBP1-210ENST00000572787 ATP2B1P20020 1258 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 SSFA2P28290 1259 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 SOX11P35716 441 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 FAM50AQ14320 339 aaKnown RBP6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 TMEM164Q5U3C3 297 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 PDCD7Q8N8D1 485 aaKnown RBP6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 SLC43A3Q8NBI5 491 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 VTI1AQ96AJ9 217 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms