RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 C14orf93Q9H972 538 aaKnown RBP26.86■■□□□ 1.89
CHD3-214ENST00000572579 SOS2Q07890 1332 aaPredicted RBP26.86■■□□□ 1.89
CHD3-214ENST00000572579 ACIN1Q9UKV3 1341 aaKnown RBP26.86■■□□□ 1.89
CHD3-214ENST00000572579 CFAP70Q5T0N1 1121 aa26.84■■□□□ 1.89
CHD3-214ENST00000572579 IFT172Q9UG01 1749 aa26.83■■□□□ 1.89
CHD3-214ENST00000572579 NRXN1Q9ULB1 1477 aa26.81■■□□□ 1.88
CHD3-214ENST00000572579 ZNF772Q68DY9 489 aaPredicted RBP26.81■■□□□ 1.88
CHD3-214ENST00000572579 YTHDC2Q9H6S0 1430 aaKnown RBP26.8■■□□□ 1.88
CHD3-214ENST00000572579 NUTM2FA1L443 756 aa26.79■■□□□ 1.88
CHD3-214ENST00000572579 ESCO1Q5FWF5 840 aa26.78■■□□□ 1.88
CHD3-214ENST00000572579 LAMC1P11047 1609 aa26.77■■□□□ 1.88
CHD3-214ENST00000572579 AFF2P51816 1311 aa26.77■■□□□ 1.88
CHD3-214ENST00000572579 SIRT1Q96EB6 747 aa26.76■■□□□ 1.87
CHD3-214ENST00000572579 HRCP23327 699 aa26.75■■□□□ 1.87
CHD3-214ENST00000572579 FOXO3O43524 673 aa26.74■■□□□ 1.87
CHD3-214ENST00000572579 XPCQ01831 940 aaPredicted RBP26.74■■□□□ 1.87
CHD3-214ENST00000572579 C8orf37Q96NL8 207 aa26.74■■□□□ 1.87
CHD3-214ENST00000572579 CDC42BPGQ6DT37 1551 aa26.74■■□□□ 1.87
CHD3-214ENST00000572579 MYOM2P54296 1465 aa26.74■■□□□ 1.87
CHD3-214ENST00000572579 ADAMTS2O95450 1211 aa26.72■■□□□ 1.87
CHD3-214ENST00000572579 RXRBP28702 533 aa26.7■■□□□ 1.86
CHD3-214ENST00000572579 PXDNQ92626 1479 aa26.69■■□□□ 1.86
CHD3-214ENST00000572579 DHX57Q6P158 1386 aaKnown RBP26.69■■□□□ 1.86
CHD3-214ENST00000572579 PRAM1Q96QH2 718 aa26.68■■□□□ 1.86
CHD3-214ENST00000572579 NPHP3Q7Z494 1330 aa26.67■■□□□ 1.86
CHD3-214ENST00000572579 KDM2AQ9Y2K7 1162 aa26.67■■□□□ 1.86
CHD3-214ENST00000572579 KNDC1Q76NI1 1749 aa26.66■■□□□ 1.86
CHD3-214ENST00000572579 SAFB2Q14151 953 aaKnown RBP eCLIP26.66■■□□□ 1.86
CHD3-214ENST00000572579 DCAF11Q8TEB1 546 aa26.66■■□□□ 1.86
CHD3-214ENST00000572579 QTRT2Q9H974 415 aaKnown RBP26.66■■□□□ 1.86
CHD3-214ENST00000572579 NGLY1Q96IV0 654 aa26.64■■□□□ 1.86
CHD3-214ENST00000572579 ADGRB1O14514 1584 aa26.63■■□□□ 1.85
CHD3-214ENST00000572579 FNBP4Q8N3X1 1017 aaPredicted RBP26.61■■□□□ 1.85
CHD3-214ENST00000572579 UPF1Q92900 1129 aaKnown RBP eCLIP26.6■■□□□ 1.85
CHD3-214ENST00000572579 TRAK1Q9UPV9 953 aa26.6■■□□□ 1.85
CHD3-214ENST00000572579 FMN2Q9NZ56 1722 aa26.57■■□□□ 1.84
CHD3-214ENST00000572579 RBM6P78332 1123 aaKnown RBP26.57■■□□□ 1.84
CHD3-214ENST00000572579 KRT28Q7Z3Y7 464 aa26.57■■□□□ 1.84
CHD3-214ENST00000572579 SPATA31A3Q5VYP0 1347 aa26.57■■□□□ 1.84
CHD3-214ENST00000572579 CDK12Q9NYV4 1490 aaPredicted RBP26.56■■□□□ 1.84
CHD3-214ENST00000572579 POGKQ9P215 609 aa26.56■■□□□ 1.84
CHD3-214ENST00000572579 USP21Q9UK80 565 aa26.56■■□□□ 1.84
CHD3-214ENST00000572579 PHF8Q9UPP1 1060 aa26.56■■□□□ 1.84
CHD3-214ENST00000572579 COL22A1Q8NFW1 1626 aaPredicted RBP26.56■■□□□ 1.84
CHD3-214ENST00000572579 DLC1Q96QB1 1528 aa26.55■■□□□ 1.84
CHD3-214ENST00000572579 HIRIP3Q9BW71 556 aaPredicted RBP26.55■■□□□ 1.84
CHD3-214ENST00000572579 RGS12O14924 1447 aa26.54■■□□□ 1.84
CHD3-214ENST00000572579 STAC3Q96MF2 364 aa26.52■■□□□ 1.84
CHD3-214ENST00000572579 BCL9LQ86UU0 1499 aa26.51■■□□□ 1.83
CHD3-214ENST00000572579 PRR36Q9H6K5 1346 aa26.51■■□□□ 1.83
CHD3-214ENST00000572579 MINK1Q8N4C8 1332 aaPredicted RBP26.5■■□□□ 1.83
CHD3-214ENST00000572579 PMFBP1Q8TBY8 1022 aa26.5■■□□□ 1.83
CHD3-214ENST00000572579 TRPC5Q9UL62 973 aaPredicted RBP26.49■■□□□ 1.83
CHD3-214ENST00000572579 ATRNO75882 1429 aa26.48■■□□□ 1.83
CHD3-214ENST00000572579 CABLES1Q8TDN4 633 aa26.47■■□□□ 1.83
CHD3-214ENST00000572579 USP32Q8NFA0 1604 aa26.45■■□□□ 1.82
CHD3-214ENST00000572579 RGPD8O14715 1765 aaPredicted RBP26.45■■□□□ 1.82
CHD3-214ENST00000572579 WASLO00401 505 aaPredicted RBP26.44■■□□□ 1.82
CHD3-214ENST00000572579 PSME1Q06323 249 aa26.44■■□□□ 1.82
CHD3-214ENST00000572579 ANKARQ7Z5J8 1434 aa26.44■■□□□ 1.82
CHD3-214ENST00000572579 KIF1AQ12756 1690 aa26.43■■□□□ 1.82
CHD3-214ENST00000572579 SBNO1A3KN83 1393 aa26.43■■□□□ 1.82
CHD3-214ENST00000572579 ADGRB2O60241 1585 aa26.42■■□□□ 1.82
CHD3-214ENST00000572579 TNS3Q68CZ2 1445 aa26.42■■□□□ 1.82
CHD3-214ENST00000572579 NBPF1Q3BBV0 1214 aa26.42■■□□□ 1.82
CHD3-214ENST00000572579 PLEKHG5O94827 1062 aa26.41■■□□□ 1.82
CHD3-214ENST00000572579 SLIT2O94813 1529 aa26.39■■□□□ 1.81
CHD3-214ENST00000572579 UNC5CLQ8IV45 518 aa26.38■■□□□ 1.81
CHD3-214ENST00000572579 GJD4Q96KN9 370 aaPredicted RBP26.38■■□□□ 1.81
CHD3-214ENST00000572579 LMOD2Q6P5Q4 547 aa26.37■■□□□ 1.81
CHD3-214ENST00000572579 FAM83GA6ND36 823 aa26.35■■□□□ 1.81
CHD3-214ENST00000572579 TULP4Q9NRJ4 1543 aa26.34■■□□□ 1.81
CHD3-214ENST00000572579 NUDT16Q96DE0 195 aaKnown RBP26.33■■□□□ 1.81
CHD3-214ENST00000572579 SIN3AQ96ST3 1273 aa26.32■■□□□ 1.8
CHD3-214ENST00000572579 CDK19Q9BWU1 502 aa26.32■■□□□ 1.8
CHD3-214ENST00000572579 ARHGEF10O15013 1369 aa26.32■■□□□ 1.8
CHD3-214ENST00000572579 L3MBTL2Q969R5 705 aa26.31■■□□□ 1.8
CHD3-214ENST00000572579 MARF1Q9Y4F3 1742 aaKnown RBP26.3■■□□□ 1.8
CHD3-214ENST00000572579 RALGAPBQ86X10 1494 aa26.3■■□□□ 1.8
CHD3-214ENST00000572579 EIF3AQ14152 1382 aaKnown RBP26.29■■□□□ 1.8
CHD3-214ENST00000572579 ARHGEF28Q8N1W1 1705 aaKnown RBP26.28■■□□□ 1.8
CHD3-214ENST00000572579 EP400Q96L91 3159 aa26.28■■□□□ 1.8
CHD3-214ENST00000572579 HAP1P54257 671 aaPredicted RBP26.28■■□□□ 1.8
CHD3-214ENST00000572579 NGDNQ8NEJ9 315 aaKnown RBP26.28■■□□□ 1.8
CHD3-214ENST00000572579 GPRASP1Q5JY77 1395 aa26.28■■□□□ 1.8
CHD3-214ENST00000572579 ATP7BP35670 1465 aa26.28■■□□□ 1.8
CHD3-214ENST00000572579 TRPM3Q9HCF6 1732 aaPredicted RBP26.27■■□□□ 1.8
CHD3-214ENST00000572579 GLI3P10071 1580 aa26.26■■□□□ 1.79
CHD3-214ENST00000572579 VPS72Q15906 364 aa26.26■■□□□ 1.79
CHD3-214ENST00000572579 ATAD2Q6PL18 1390 aa26.25■■□□□ 1.79
CHD3-214ENST00000572579 ONECUT3O60422 494 aaPredicted RBP26.22■■□□□ 1.79
CHD3-214ENST00000572579 PAK3O75914 559 aaPredicted RBP26.22■■□□□ 1.79
CHD3-214ENST00000572579 PLEKHG3A1L390 1219 aa26.21■■□□□ 1.79
CHD3-214ENST00000572579 NBPF8Q3BBV2 869 aa26.21■■□□□ 1.79
CHD3-214ENST00000572579 CCDC61Q9Y6R9 512 aa26.21■■□□□ 1.79
CHD3-214ENST00000572579 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.2■■□□□ 1.79
CHD3-214ENST00000572579 ALS2Q96Q42 1657 aa26.2■■□□□ 1.78
CHD3-214ENST00000572579 ABCA3Q99758 1704 aa26.19■■□□□ 1.78
CHD3-214ENST00000572579 KIAA1210Q9ULL0 1709 aa26.19■■□□□ 1.78
CHD3-214ENST00000572579 ACEP12821 1306 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms