RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CDK12Q9NYV4 1490 aaPredicted RBP10.11□□□□□ -0.79
VPS53-213ENST00000572334 AFF2P51816 1311 aa10.11□□□□□ -0.79
VPS53-213ENST00000572334 MARF1Q9Y4F3 1742 aaKnown RBP10.11□□□□□ -0.79
VPS53-213ENST00000572334 PIK3C2GO75747 1445 aa10.11□□□□□ -0.79
VPS53-213ENST00000572334 FMN2Q9NZ56 1722 aa10.1□□□□□ -0.79
VPS53-213ENST00000572334 CCDC144AA2RUR9 1427 aa10.1□□□□□ -0.79
VPS53-213ENST00000572334 UPF1Q92900 1129 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS53-213ENST00000572334 PLEKHH1Q9ULM0 1364 aa10.1□□□□□ -0.79
VPS53-213ENST00000572334 PXDNQ92626 1479 aa10.1□□□□□ -0.79
VPS53-213ENST00000572334 RGL3Q3MIN7 710 aa10.09□□□□□ -0.79
VPS53-213ENST00000572334 LRPPRCP42704 1394 aaKnown RBP10.09□□□□□ -0.79
VPS53-213ENST00000572334 NRXN1Q9ULB1 1477 aa10.09□□□□□ -0.79
VPS53-213ENST00000572334 RGS12O14924 1447 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 RXRBP28702 533 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 TMEM132EQ6IEE7 984 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 WAPLQ7Z5K2 1190 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 C8orf37Q96NL8 207 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 ABCC11Q96J66 1382 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 ANKRD30BQ9BXX2 1392 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 MYOM2P54296 1465 aa10.08□□□□□ -0.8
VPS53-213ENST00000572334 YTHDC2Q9H6S0 1430 aaKnown RBP10.07□□□□□ -0.8
VPS53-213ENST00000572334 ADRA2BP18089 450 aa10.06□□□□□ -0.8
VPS53-213ENST00000572334 ADAMTS2O95450 1211 aa10.05□□□□□ -0.8
VPS53-213ENST00000572334 QTRT2Q9H974 415 aaKnown RBP10.05□□□□□ -0.8
VPS53-213ENST00000572334 STK26Q9P289 416 aa10.05□□□□□ -0.8
VPS53-213ENST00000572334 EP400Q96L91 3159 aa10.04□□□□□ -0.8
VPS53-213ENST00000572334 USP32Q8NFA0 1604 aa10.04□□□□□ -0.8
VPS53-213ENST00000572334 KIF1AQ12756 1690 aa10.04□□□□□ -0.8
VPS53-213ENST00000572334 RBM6P78332 1123 aaKnown RBP10.04□□□□□ -0.8
VPS53-213ENST00000572334 FNBP4Q8N3X1 1017 aaPredicted RBP10.04□□□□□ -0.8
VPS53-213ENST00000572334 C14orf93Q9H972 538 aaKnown RBP10.04□□□□□ -0.8
VPS53-213ENST00000572334 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.04□□□□□ -0.8
VPS53-213ENST00000572334 BCL9LQ86UU0 1499 aa10.04□□□□□ -0.8
VPS53-213ENST00000572334 RAB3GAP2Q9H2M9 1393 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 NUTM2FA1L443 756 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 ADGRB1O14514 1584 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 FOXO3O43524 673 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 ATRNO75882 1429 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 XPCQ01831 940 aaPredicted RBP10.03□□□□□ -0.8
VPS53-213ENST00000572334 ESCO1Q5FWF5 840 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 ABCA3Q99758 1704 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 NPHP3Q7Z494 1330 aa10.03□□□□□ -0.8
VPS53-213ENST00000572334 CFAP70Q5T0N1 1121 aa10.02□□□□□ -0.81
VPS53-213ENST00000572334 SIRT1Q96EB6 747 aa10.02□□□□□ -0.81
VPS53-213ENST00000572334 NGLY1Q96IV0 654 aa10.02□□□□□ -0.81
VPS53-213ENST00000572334 DLC1Q96QB1 1528 aa10.02□□□□□ -0.81
VPS53-213ENST00000572334 BRWD3Q6RI45 1802 aa10.01□□□□□ -0.81
VPS53-213ENST00000572334 USP21Q9UK80 565 aa10.01□□□□□ -0.81
VPS53-213ENST00000572334 ADGRB2O60241 1585 aa10.01□□□□□ -0.81
VPS53-213ENST00000572334 TRPM3Q9HCF6 1732 aaPredicted RBP10□□□□□ -0.81
VPS53-213ENST00000572334 SPATA31A3Q5VYP0 1347 aa10□□□□□ -0.81
VPS53-213ENST00000572334 GLI3P10071 1580 aa10□□□□□ -0.81
VPS53-213ENST00000572334 SLIT2O94813 1529 aa9.99□□□□□ -0.81
VPS53-213ENST00000572334 TRPC5Q9UL62 973 aaPredicted RBP9.99□□□□□ -0.81
VPS53-213ENST00000572334 PLCH1Q4KWH8 1693 aa9.98□□□□□ -0.81
VPS53-213ENST00000572334 ACIN1Q9UKV3 1341 aaKnown RBP9.98□□□□□ -0.81
VPS53-213ENST00000572334 DHX57Q6P158 1386 aaKnown RBP9.98□□□□□ -0.81
VPS53-213ENST00000572334 ALS2Q96Q42 1657 aa9.97□□□□□ -0.81
VPS53-213ENST00000572334 ARHGEF28Q8N1W1 1705 aaKnown RBP9.97□□□□□ -0.81
VPS53-213ENST00000572334 NWD2Q9ULI1 1742 aa9.97□□□□□ -0.81
VPS53-213ENST00000572334 CRYBG1Q9Y4K1 1723 aa9.97□□□□□ -0.81
VPS53-213ENST00000572334 PRAM1Q96QH2 718 aa9.97□□□□□ -0.81
VPS53-213ENST00000572334 TNS3Q68CZ2 1445 aa9.97□□□□□ -0.81
VPS53-213ENST00000572334 SRCAPQ6ZRS2 3230 aa9.97□□□□□ -0.81
VPS53-213ENST00000572334 SAFB2Q14151 953 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS53-213ENST00000572334 KRT28Q7Z3Y7 464 aa9.96□□□□□ -0.82
VPS53-213ENST00000572334 PHF8Q9UPP1 1060 aa9.96□□□□□ -0.82
VPS53-213ENST00000572334 NRAPQ86VF7 1730 aa9.96□□□□□ -0.82
VPS53-213ENST00000572334 PRR36Q9H6K5 1346 aa9.95□□□□□ -0.82
VPS53-213ENST00000572334 SBNO1A3KN83 1393 aa9.95□□□□□ -0.82
VPS53-213ENST00000572334 ANKARQ7Z5J8 1434 aa9.95□□□□□ -0.82
VPS53-213ENST00000572334 RALGAPBQ86X10 1494 aa9.95□□□□□ -0.82
VPS53-213ENST00000572334 ATAD2Q6PL18 1390 aa9.94□□□□□ -0.82
VPS53-213ENST00000572334 CABLES1Q8TDN4 633 aa9.94□□□□□ -0.82
VPS53-213ENST00000572334 GJD4Q96KN9 370 aaPredicted RBP9.94□□□□□ -0.82
VPS53-213ENST00000572334 TULP4Q9NRJ4 1543 aa9.93□□□□□ -0.82
VPS53-213ENST00000572334 HRCP23327 699 aa9.93□□□□□ -0.82
VPS53-213ENST00000572334 UNC5CLQ8IV45 518 aa9.93□□□□□ -0.82
VPS53-213ENST00000572334 TRAK1Q9UPV9 953 aa9.93□□□□□ -0.82
VPS53-213ENST00000572334 PMFBP1Q8TBY8 1022 aa9.92□□□□□ -0.82
VPS53-213ENST00000572334 ITSN1Q15811 1721 aa9.92□□□□□ -0.82
VPS53-213ENST00000572334 KIAA1210Q9ULL0 1709 aa9.92□□□□□ -0.82
VPS53-213ENST00000572334 TOPAZ1Q8N9V7 1692 aa9.91□□□□□ -0.82
VPS53-213ENST00000572334 DCAF11Q8TEB1 546 aa9.91□□□□□ -0.82
VPS53-213ENST00000572334 HIRIP3Q9BW71 556 aaPredicted RBP9.91□□□□□ -0.82
VPS53-213ENST00000572334 POGKQ9P215 609 aa9.91□□□□□ -0.82
VPS53-213ENST00000572334 KDM2AQ9Y2K7 1162 aa9.91□□□□□ -0.82
VPS53-213ENST00000572334 MINK1Q8N4C8 1332 aaPredicted RBP9.9□□□□□ -0.82
VPS53-213ENST00000572334 FAM83GA6ND36 823 aa9.9□□□□□ -0.82
VPS53-213ENST00000572334 PSME1Q06323 249 aa9.9□□□□□ -0.82
VPS53-213ENST00000572334 COL14A1Q05707 1796 aaKnown RBP9.9□□□□□ -0.82
VPS53-213ENST00000572334 ATP7BP35670 1465 aa9.9□□□□□ -0.83
VPS53-213ENST00000572334 ARHGEF10O15013 1369 aa9.89□□□□□ -0.83
VPS53-213ENST00000572334 WASLO00401 505 aaPredicted RBP9.89□□□□□ -0.83
VPS53-213ENST00000572334 ONECUT3O60422 494 aaPredicted RBP9.89□□□□□ -0.83
VPS53-213ENST00000572334 VPS72Q15906 364 aa9.89□□□□□ -0.83
VPS53-213ENST00000572334 PHRF1Q9P1Y6 1649 aaKnown RBP9.89□□□□□ -0.83
VPS53-213ENST00000572334 STAC3Q96MF2 364 aa9.88□□□□□ -0.83
VPS53-213ENST00000572334 PLEKHG5O94827 1062 aa9.87□□□□□ -0.83
VPS53-213ENST00000572334 THSD7AQ9UPZ6 1657 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms