RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 NRXN1Q9ULB1 1477 aa14.35□□□□□ -0.11
CIITA-207ENST00000571545 ABCC11Q96J66 1382 aa14.34□□□□□ -0.11
CIITA-207ENST00000571545 LRP6O75581 1613 aa14.34□□□□□ -0.11
CIITA-207ENST00000571545 PPP4R3CPQ6ZMV5 832 aa14.33□□□□□ -0.12
CIITA-207ENST00000571545 STAC3Q96MF2 364 aa14.32□□□□□ -0.12
CIITA-207ENST00000571545 YTHDC2Q9H6S0 1430 aaKnown RBP14.32□□□□□ -0.12
CIITA-207ENST00000571545 NPHP3Q7Z494 1330 aa14.31□□□□□ -0.12
CIITA-207ENST00000571545 DHX57Q6P158 1386 aaKnown RBP14.31□□□□□ -0.12
CIITA-207ENST00000571545 PNPLA6Q8IY17 1366 aa14.31□□□□□ -0.12
CIITA-207ENST00000571545 KIF1AQ12756 1690 aa14.3□□□□□ -0.12
CIITA-207ENST00000571545 POTEAQ6S8J7 498 aa14.3□□□□□ -0.12
CIITA-207ENST00000571545 SIRT1Q96EB6 747 aa14.3□□□□□ -0.12
CIITA-207ENST00000571545 C14orf93Q9H972 538 aaKnown RBP14.29□□□□□ -0.12
CIITA-207ENST00000571545 STK26Q9P289 416 aa14.29□□□□□ -0.12
CIITA-207ENST00000571545 SOS2Q07890 1332 aaPredicted RBP14.29□□□□□ -0.12
CIITA-207ENST00000571545 FMN2Q9NZ56 1722 aa14.29□□□□□ -0.12
CIITA-207ENST00000571545 COL22A1Q8NFW1 1626 aaPredicted RBP14.28□□□□□ -0.12
CIITA-207ENST00000571545 DLC1Q96QB1 1528 aa14.28□□□□□ -0.12
CIITA-207ENST00000571545 NUTM2BA6NNL0 878 aaPredicted RBP14.27□□□□□ -0.13
CIITA-207ENST00000571545 NUTM2EB1AL46 878 aaPredicted RBP14.27□□□□□ -0.13
CIITA-207ENST00000571545 NUTM2AQ8IVF1 878 aaPredicted RBP14.27□□□□□ -0.13
CIITA-207ENST00000571545 CDK12Q9NYV4 1490 aaPredicted RBP14.26□□□□□ -0.13
CIITA-207ENST00000571545 ESCO1Q5FWF5 840 aa14.26□□□□□ -0.13
CIITA-207ENST00000571545 TMEM132EQ6IEE7 984 aa14.26□□□□□ -0.13
CIITA-207ENST00000571545 ORAI2Q96SN7 254 aa14.26□□□□□ -0.13
CIITA-207ENST00000571545 WAPLQ7Z5K2 1190 aa14.24□□□□□ -0.13
CIITA-207ENST00000571545 DDX17Q92841 729 aaKnown RBP14.24□□□□□ -0.13
CIITA-207ENST00000571545 ADGRB2O60241 1585 aa14.24□□□□□ -0.13
CIITA-207ENST00000571545 PXDNQ92626 1479 aa14.24□□□□□ -0.13
CIITA-207ENST00000571545 EIF3AQ14152 1382 aaKnown RBP14.23□□□□□ -0.13
CIITA-207ENST00000571545 AFF2P51816 1311 aa14.23□□□□□ -0.13
CIITA-207ENST00000571545 RXRBP28702 533 aa14.23□□□□□ -0.13
CIITA-207ENST00000571545 PLEKHH1Q9ULM0 1364 aa14.22□□□□□ -0.13
CIITA-207ENST00000571545 ADGRB1O14514 1584 aa14.22□□□□□ -0.13
CIITA-207ENST00000571545 CFAP70Q5T0N1 1121 aa14.22□□□□□ -0.13
CIITA-207ENST00000571545 C8orf37Q96NL8 207 aa14.22□□□□□ -0.13
CIITA-207ENST00000571545 ANKARQ7Z5J8 1434 aa14.22□□□□□ -0.13
CIITA-207ENST00000571545 MARF1Q9Y4F3 1742 aaKnown RBP14.21□□□□□ -0.13
CIITA-207ENST00000571545 POGKQ9P215 609 aa14.21□□□□□ -0.13
CIITA-207ENST00000571545 DCAF11Q8TEB1 546 aa14.2□□□□□ -0.14
CIITA-207ENST00000571545 PRAM1Q96QH2 718 aa14.2□□□□□ -0.14
CIITA-207ENST00000571545 FOXO3O43524 673 aa14.19□□□□□ -0.14
CIITA-207ENST00000571545 NGLY1Q96IV0 654 aa14.19□□□□□ -0.14
CIITA-207ENST00000571545 KIAA1210Q9ULL0 1709 aa14.18□□□□□ -0.14
CIITA-207ENST00000571545 NUTM2FA1L443 756 aa14.17□□□□□ -0.14
CIITA-207ENST00000571545 ADAMTS2O95450 1211 aa14.17□□□□□ -0.14
CIITA-207ENST00000571545 RBM6P78332 1123 aaKnown RBP14.17□□□□□ -0.14
CIITA-207ENST00000571545 PSME1Q06323 249 aa14.17□□□□□ -0.14
CIITA-207ENST00000571545 KDM2AQ9Y2K7 1162 aa14.17□□□□□ -0.14
CIITA-207ENST00000571545 RGPD8O14715 1765 aaPredicted RBP14.17□□□□□ -0.14
CIITA-207ENST00000571545 TNS3Q68CZ2 1445 aa14.16□□□□□ -0.14
CIITA-207ENST00000571545 PHF8Q9UPP1 1060 aa14.16□□□□□ -0.14
CIITA-207ENST00000571545 TULP4Q9NRJ4 1543 aa14.15□□□□□ -0.14
CIITA-207ENST00000571545 ITSN1Q15811 1721 aa14.15□□□□□ -0.14
CIITA-207ENST00000571545 ARHGEF28Q8N1W1 1705 aaKnown RBP14.15□□□□□ -0.14
CIITA-207ENST00000571545 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.15□□□□□ -0.14
CIITA-207ENST00000571545 ARHGEF10O15013 1369 aa14.15□□□□□ -0.14
CIITA-207ENST00000571545 QTRT2Q9H974 415 aaKnown RBP14.15□□□□□ -0.14
CIITA-207ENST00000571545 TRPC5Q9UL62 973 aaPredicted RBP14.15□□□□□ -0.14
CIITA-207ENST00000571545 SPATA31A3Q5VYP0 1347 aa14.15□□□□□ -0.15
CIITA-207ENST00000571545 SBNO1A3KN83 1393 aa14.14□□□□□ -0.15
CIITA-207ENST00000571545 SAFB2Q14151 953 aaKnown RBP eCLIP14.14□□□□□ -0.15
CIITA-207ENST00000571545 FNBP4Q8N3X1 1017 aaPredicted RBP14.14□□□□□ -0.15
CIITA-207ENST00000571545 USP21Q9UK80 565 aa14.14□□□□□ -0.15
CIITA-207ENST00000571545 TRAK1Q9UPV9 953 aa14.14□□□□□ -0.15
CIITA-207ENST00000571545 USP32Q8NFA0 1604 aa14.14□□□□□ -0.15
CIITA-207ENST00000571545 XPCQ01831 940 aaPredicted RBP14.13□□□□□ -0.15
CIITA-207ENST00000571545 KRT28Q7Z3Y7 464 aa14.13□□□□□ -0.15
CIITA-207ENST00000571545 GPRASP1Q5JY77 1395 aa14.12□□□□□ -0.15
CIITA-207ENST00000571545 RGS12O14924 1447 aa14.12□□□□□ -0.15
CIITA-207ENST00000571545 ATRNO75882 1429 aa14.12□□□□□ -0.15
CIITA-207ENST00000571545 HAP1P54257 671 aaPredicted RBP14.11□□□□□ -0.15
CIITA-207ENST00000571545 ABCA3Q99758 1704 aa14.1□□□□□ -0.15
CIITA-207ENST00000571545 NWD2Q9ULI1 1742 aa14.1□□□□□ -0.15
CIITA-207ENST00000571545 WASLO00401 505 aaPredicted RBP14.09□□□□□ -0.15
CIITA-207ENST00000571545 MINK1Q8N4C8 1332 aaPredicted RBP14.09□□□□□ -0.15
CIITA-207ENST00000571545 ATAD2Q6PL18 1390 aa14.09□□□□□ -0.15
CIITA-207ENST00000571545 TRPM3Q9HCF6 1732 aaPredicted RBP14.08□□□□□ -0.16
CIITA-207ENST00000571545 UPF1Q92900 1129 aaKnown RBP eCLIP14.08□□□□□ -0.16
CIITA-207ENST00000571545 BCL9LQ86UU0 1499 aa14.07□□□□□ -0.16
CIITA-207ENST00000571545 SLIT2O94813 1529 aa14.07□□□□□ -0.16
CIITA-207ENST00000571545 HIRIP3Q9BW71 556 aaPredicted RBP14.07□□□□□ -0.16
CIITA-207ENST00000571545 PLCH1Q4KWH8 1693 aa14.07□□□□□ -0.16
CIITA-207ENST00000571545 ALS2Q96Q42 1657 aa14.07□□□□□ -0.16
CIITA-207ENST00000571545 ATP7BP35670 1465 aa14.06□□□□□ -0.16
CIITA-207ENST00000571545 TOPAZ1Q8N9V7 1692 aa14.05□□□□□ -0.16
CIITA-207ENST00000571545 LMOD2Q6P5Q4 547 aa14.05□□□□□ -0.16
CIITA-207ENST00000571545 UNC5CLQ8IV45 518 aa14.05□□□□□ -0.16
CIITA-207ENST00000571545 PMFBP1Q8TBY8 1022 aa14.05□□□□□ -0.16
CIITA-207ENST00000571545 NGDNQ8NEJ9 315 aaKnown RBP14.04□□□□□ -0.16
CIITA-207ENST00000571545 GJD4Q96KN9 370 aaPredicted RBP14.04□□□□□ -0.16
CIITA-207ENST00000571545 PRR36Q9H6K5 1346 aa14.03□□□□□ -0.16
CIITA-207ENST00000571545 COL14A1Q05707 1796 aaKnown RBP14.02□□□□□ -0.16
CIITA-207ENST00000571545 QRICH2Q9H0J4 1663 aa14.01□□□□□ -0.17
CIITA-207ENST00000571545 RALGAPBQ86X10 1494 aa14.01□□□□□ -0.17
CIITA-207ENST00000571545 CENPJQ9HC77 1338 aaPredicted RBP14.01□□□□□ -0.17
CIITA-207ENST00000571545 CNKSR2Q8WXI2 1034 aa14.01□□□□□ -0.17
CIITA-207ENST00000571545 NUDT16Q96DE0 195 aaKnown RBP14.01□□□□□ -0.17
CIITA-207ENST00000571545 POLR3AO14802 1390 aaPredicted RBP14□□□□□ -0.17
CIITA-207ENST00000571545 CCDC61Q9Y6R9 512 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms