RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 ROBO2Q9HCK4 1378 aa16.49■□□□□ 0.23
CDRT1-206ENST00000571263 DDX10Q13206 875 aaKnown RBP16.48■□□□□ 0.23
CDRT1-206ENST00000571263 STRCQ7RTU9 1775 aa16.48■□□□□ 0.23
CDRT1-206ENST00000571263 DISP3Q9P2K9 1392 aa16.48■□□□□ 0.23
CDRT1-206ENST00000571263 NKTRP30414 1462 aaKnown RBP16.47■□□□□ 0.23
CDRT1-206ENST00000571263 NWD1Q149M9 1564 aa16.47■□□□□ 0.23
CDRT1-206ENST00000571263 MINK1Q8N4C8 1332 aaPredicted RBP16.46■□□□□ 0.23
CDRT1-206ENST00000571263 NCOA3Q9Y6Q9 1424 aa16.46■□□□□ 0.23
CDRT1-206ENST00000571263 SAFB2Q14151 953 aaKnown RBP eCLIP16.46■□□□□ 0.23
CDRT1-206ENST00000571263 POLR3GLQ9BT43 218 aa16.46■□□□□ 0.23
CDRT1-206ENST00000571263 NINLQ9Y2I6 1382 aa16.46■□□□□ 0.23
CDRT1-206ENST00000571263 WASLO00401 505 aaPredicted RBP16.45■□□□□ 0.22
CDRT1-206ENST00000571263 SRPK2P78362 688 aaKnown RBP16.45■□□□□ 0.22
CDRT1-206ENST00000571263 ATAD2Q6PL18 1390 aa16.45■□□□□ 0.22
CDRT1-206ENST00000571263 PLEKHH1Q9ULM0 1364 aa16.45■□□□□ 0.22
CDRT1-206ENST00000571263 CDK19Q9BWU1 502 aa16.44■□□□□ 0.22
CDRT1-206ENST00000571263 PROSER2Q86WR7 435 aaPredicted RBP16.43■□□□□ 0.22
CDRT1-206ENST00000571263 ADGRB2O60241 1585 aa16.43■□□□□ 0.22
CDRT1-206ENST00000571263 TULP4Q9NRJ4 1543 aa16.41■□□□□ 0.22
CDRT1-206ENST00000571263 CABP2Q9NPB3 220 aa16.39■□□□□ 0.21
CDRT1-206ENST00000571263 CCDC61Q9Y6R9 512 aa16.39■□□□□ 0.21
CDRT1-206ENST00000571263 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.38■□□□□ 0.21
CDRT1-206ENST00000571263 ADGRL3Q9HAR2 1447 aa16.37■□□□□ 0.21
CDRT1-206ENST00000571263 C14orf37Q86TY3 774 aa16.37■□□□□ 0.21
CDRT1-206ENST00000571263 TMC1Q8TDI8 760 aa16.37■□□□□ 0.21
CDRT1-206ENST00000571263 C19orf44Q9H6X5 657 aa16.37■□□□□ 0.21
CDRT1-206ENST00000571263 TERF2IPQ9NYB0 399 aa16.37■□□□□ 0.21
CDRT1-206ENST00000571263 NUDT16Q96DE0 195 aaKnown RBP16.36■□□□□ 0.21
CDRT1-206ENST00000571263 PANK3Q9H999 370 aa16.36■□□□□ 0.21
CDRT1-206ENST00000571263 ANP32CO43423 234 aa16.35■□□□□ 0.21
CDRT1-206ENST00000571263 ANKARQ7Z5J8 1434 aa16.35■□□□□ 0.21
CDRT1-206ENST00000571263 CDC42BPGQ6DT37 1551 aa16.34■□□□□ 0.21
CDRT1-206ENST00000571263 HDGFL2Q7Z4V5 671 aaPredicted RBP16.34■□□□□ 0.21
CDRT1-206ENST00000571263 ZNF692Q9BU19 519 aaPredicted RBP16.34■□□□□ 0.21
CDRT1-206ENST00000571263 KNSTRNQ9Y448 316 aa16.34■□□□□ 0.21
CDRT1-206ENST00000571263 SLC12A5Q9H2X9 1139 aa16.33■□□□□ 0.2
CDRT1-206ENST00000571263 TMEM94Q12767 1356 aa16.33■□□□□ 0.2
CDRT1-206ENST00000571263 DCCP43146 1447 aa16.33■□□□□ 0.2
CDRT1-206ENST00000571263 PLEKHG3A1L390 1219 aa16.32■□□□□ 0.2
CDRT1-206ENST00000571263 PER1O15534 1290 aaPredicted RBP16.32■□□□□ 0.2
CDRT1-206ENST00000571263 KTN1Q86UP2 1357 aaKnown RBP16.32■□□□□ 0.2
CDRT1-206ENST00000571263 ANKRD36BQ8N2N9 1353 aa16.32■□□□□ 0.2
CDRT1-206ENST00000571263 ATP7BP35670 1465 aa16.31■□□□□ 0.2
CDRT1-206ENST00000571263 MSH6P52701 1360 aa16.31■□□□□ 0.2
CDRT1-206ENST00000571263 ZNF335Q9H4Z2 1342 aaPredicted RBP16.31■□□□□ 0.2
CDRT1-206ENST00000571263 ATF3P18847 181 aa16.31■□□□□ 0.2
CDRT1-206ENST00000571263 CADPS2Q86UW7 1296 aa16.31■□□□□ 0.2
CDRT1-206ENST00000571263 CABP1Q9NZU7 370 aa16.31■□□□□ 0.2
CDRT1-206ENST00000571263 MYOM1P52179 1685 aa16.3■□□□□ 0.2
CDRT1-206ENST00000571263 PPIP5K1Q6PFW1 1433 aa16.3■□□□□ 0.2
CDRT1-206ENST00000571263 NPC1L1Q9UHC9 1359 aa16.29■□□□□ 0.2
CDRT1-206ENST00000571263 STRCP1A6NGW2 1772 aa16.29■□□□□ 0.2
CDRT1-206ENST00000571263 NALCNQ8IZF0 1738 aa16.29■□□□□ 0.2
CDRT1-206ENST00000571263 LRRC7Q96NW7 1537 aa16.29■□□□□ 0.2
CDRT1-206ENST00000571263 ITSN1Q15811 1721 aa16.28■□□□□ 0.2
CDRT1-206ENST00000571263 FMN2Q9NZ56 1722 aa16.28■□□□□ 0.2
CDRT1-206ENST00000571263 PRR36Q9H6K5 1346 aa16.27■□□□□ 0.2
CDRT1-206ENST00000571263 RALBP1Q15311 655 aa16.27■□□□□ 0.2
CDRT1-206ENST00000571263 BRD4O60885 1362 aaPredicted RBP16.26■□□□□ 0.19
CDRT1-206ENST00000571263 CGNL1Q0VF96 1302 aa16.25■□□□□ 0.19
CDRT1-206ENST00000571263 RBM33Q96EV2 1170 aaKnown RBP16.25■□□□□ 0.19
CDRT1-206ENST00000571263 CPSF1Q10570 1443 aaKnown RBP16.25■□□□□ 0.19
CDRT1-206ENST00000571263 NSD2O96028 1365 aa16.25■□□□□ 0.19
CDRT1-206ENST00000571263 CARD14Q9BXL6 1004 aa16.24■□□□□ 0.19
CDRT1-206ENST00000571263 PRKRIP1Q9H875 184 aaPredicted RBP16.24■□□□□ 0.19
CDRT1-206ENST00000571263 A0A1W2PP64 1363 aa16.24■□□□□ 0.19
CDRT1-206ENST00000571263 TOPAZ1Q8N9V7 1692 aa16.24■□□□□ 0.19
CDRT1-206ENST00000571263 NGDNQ8NEJ9 315 aaKnown RBP16.23■□□□□ 0.19
CDRT1-206ENST00000571263 PHF8Q9UPP1 1060 aa16.23■□□□□ 0.19
CDRT1-206ENST00000571263 POLR3AO14802 1390 aaPredicted RBP16.23■□□□□ 0.19
CDRT1-206ENST00000571263 USP32Q8NFA0 1604 aa16.23■□□□□ 0.19
CDRT1-206ENST00000571263 ACEP12821 1306 aa16.22■□□□□ 0.19
CDRT1-206ENST00000571263 NSD3Q9BZ95 1437 aa16.22■□□□□ 0.19
CDRT1-206ENST00000571263 NUTM2FA1L443 756 aa16.22■□□□□ 0.19
CDRT1-206ENST00000571263 CCER2I3L3R5 266 aa16.22■□□□□ 0.19
CDRT1-206ENST00000571263 AMER1Q5JTC6 1135 aaPredicted RBP16.22■□□□□ 0.19
CDRT1-206ENST00000571263 CD163L1Q9NR16 1453 aa16.22■□□□□ 0.19
CDRT1-206ENST00000571263 EDC4Q6P2E9 1401 aaKnown RBP16.21■□□□□ 0.19
CDRT1-206ENST00000571263 ESCO1Q5FWF5 840 aa16.21■□□□□ 0.19
CDRT1-206ENST00000571263 MIER1Q8N108 512 aa16.21■□□□□ 0.19
CDRT1-206ENST00000571263 C1orf167Q5SNV9 1468 aa16.2■□□□□ 0.18
CDRT1-206ENST00000571263 TTC21AQ8NDW8 1320 aa16.19■□□□□ 0.18
CDRT1-206ENST00000571263 LTBP4Q8N2S1 1624 aa16.19■□□□□ 0.18
CDRT1-206ENST00000571263 MST1RQ04912 1400 aa16.19■□□□□ 0.18
CDRT1-206ENST00000571263 PARD3Q8TEW0 1356 aa16.18■□□□□ 0.18
CDRT1-206ENST00000571263 XIRP1Q702N8 1843 aaKnown RBP16.18■□□□□ 0.18
CDRT1-206ENST00000571263 CC2D1BQ5T0F9 858 aaKnown RBP16.18■□□□□ 0.18
CDRT1-206ENST00000571263 PMFBP1Q8TBY8 1022 aa16.18■□□□□ 0.18
CDRT1-206ENST00000571263 AKAP12Q02952 1782 aa16.18■□□□□ 0.18
CDRT1-206ENST00000571263 KIF1AQ12756 1690 aa16.18■□□□□ 0.18
CDRT1-206ENST00000571263 PSME1Q06323 249 aa16.17■□□□□ 0.18
CDRT1-206ENST00000571263 SLAIN2Q9P270 581 aa16.17■□□□□ 0.18
CDRT1-206ENST00000571263 USP6P35125 1406 aa16.17■□□□□ 0.18
CDRT1-206ENST00000571263 MYBBP1AQ9BQG0 1328 aaKnown RBP16.17■□□□□ 0.18
CDRT1-206ENST00000571263 MON2Q7Z3U7 1717 aa16.16■□□□□ 0.18
CDRT1-206ENST00000571263 TTC21BQ7Z4L5 1316 aa16.16■□□□□ 0.18
CDRT1-206ENST00000571263 RGPD8O14715 1765 aaPredicted RBP16.15■□□□□ 0.18
CDRT1-206ENST00000571263 FYB1O15117 783 aa16.15■□□□□ 0.18
CDRT1-206ENST00000571263 MORC1Q86VD1 984 aa16.15■□□□□ 0.18
CDRT1-206ENST00000571263 IQSEC2Q5JU85 1478 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms