RNA–Protein interactions for RNA: ENST00000571186.5

CIITA-205, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 1,041 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-205ENST00000571186 FOXD1Q16676 465 aa21.47■■□□□ 1.03
CIITA-205ENST00000571186 STK26Q9P289 416 aa21.47■■□□□ 1.03
CIITA-205ENST00000571186 NPHP3Q7Z494 1330 aa21.47■■□□□ 1.03
CIITA-205ENST00000571186 PRAG1Q86YV5 1406 aa21.46■■□□□ 1.03
CIITA-205ENST00000571186 RGL3Q3MIN7 710 aa21.46■■□□□ 1.03
CIITA-205ENST00000571186 ATAD2Q6PL18 1390 aa21.46■■□□□ 1.03
CIITA-205ENST00000571186 NUTM2FA1L443 756 aa21.45■■□□□ 1.02
CIITA-205ENST00000571186 FOXO3O43524 673 aa21.45■■□□□ 1.02
CIITA-205ENST00000571186 XPCQ01831 940 aaPredicted RBP21.45■■□□□ 1.02
CIITA-205ENST00000571186 COL22A1Q8NFW1 1626 aaPredicted RBP21.44■■□□□ 1.02
CIITA-205ENST00000571186 SRCAPQ6ZRS2 3230 aa21.44■■□□□ 1.02
CIITA-205ENST00000571186 ADGRF5Q8IZF2 1346 aa21.44■■□□□ 1.02
CIITA-205ENST00000571186 WAPLQ7Z5K2 1190 aa21.43■■□□□ 1.02
CIITA-205ENST00000571186 MARF1Q9Y4F3 1742 aaKnown RBP21.43■■□□□ 1.02
CIITA-205ENST00000571186 EP400Q96L91 3159 aa21.41■■□□□ 1.02
CIITA-205ENST00000571186 CDC42BPGQ6DT37 1551 aa21.41■■□□□ 1.02
CIITA-205ENST00000571186 ATRNO75882 1429 aa21.41■■□□□ 1.02
CIITA-205ENST00000571186 MYOM2P54296 1465 aa21.39■■□□□ 1.02
CIITA-205ENST00000571186 PXDNQ92626 1479 aa21.39■■□□□ 1.02
CIITA-205ENST00000571186 LRPPRCP42704 1394 aaKnown RBP21.39■■□□□ 1.02
CIITA-205ENST00000571186 TMEM132EQ6IEE7 984 aa21.39■■□□□ 1.01
CIITA-205ENST00000571186 CCDC144AA2RUR9 1427 aa21.38■■□□□ 1.01
CIITA-205ENST00000571186 BCL9LQ86UU0 1499 aa21.37■■□□□ 1.01
CIITA-205ENST00000571186 ANKRD30BQ9BXX2 1392 aa21.36■■□□□ 1.01
CIITA-205ENST00000571186 GJD4Q96KN9 370 aaPredicted RBP21.35■■□□□ 1.01
CIITA-205ENST00000571186 IFT172Q9UG01 1749 aa21.35■■□□□ 1.01
CIITA-205ENST00000571186 MPHOSPH9Q99550 1183 aa21.34■■□□□ 1.01
CIITA-205ENST00000571186 ZRANB1Q9UGI0 708 aa21.34■■□□□ 1.01
CIITA-205ENST00000571186 ABCC11Q96J66 1382 aa21.34■■□□□ 1.01
CIITA-205ENST00000571186 PLEKHH1Q9ULM0 1364 aa21.34■■□□□ 1.01
CIITA-205ENST00000571186 TECPR2O15040 1411 aa21.33■■□□□ 1.01
CIITA-205ENST00000571186 CCDC125Q86Z20 511 aa21.33■■□□□ 1.01
CIITA-205ENST00000571186 RGPD8O14715 1765 aaPredicted RBP21.33■■□□□ 1
CIITA-205ENST00000571186 SPATA31E1Q6ZUB1 1445 aa21.32■■□□□ 1
CIITA-205ENST00000571186 KRT28Q7Z3Y7 464 aa21.32■■□□□ 1
CIITA-205ENST00000571186 KNDC1Q76NI1 1749 aa21.32■■□□□ 1
CIITA-205ENST00000571186 FMN2Q9NZ56 1722 aa21.32■■□□□ 1
CIITA-205ENST00000571186 SPATA31A3Q5VYP0 1347 aa21.3■■□□□ 1
CIITA-205ENST00000571186 UNC5CLQ8IV45 518 aa21.3■■□□□ 1
CIITA-205ENST00000571186 YTHDC2Q9H6S0 1430 aaKnown RBP21.29■■□□□ 1
CIITA-205ENST00000571186 KIF1AQ12756 1690 aa21.28■■□□□ 1
CIITA-205ENST00000571186 PLEKHG5O94827 1062 aa21.28■■□□□ 1
CIITA-205ENST00000571186 HAP1P54257 671 aaPredicted RBP21.28■■□□□ 1
CIITA-205ENST00000571186 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.28■■□□□ 1
CIITA-205ENST00000571186 PIK3C2GO75747 1445 aa21.27■■□□□ 1
CIITA-205ENST00000571186 PSME1Q06323 249 aa21.26■□□□□ 0.99
CIITA-205ENST00000571186 PHF8Q9UPP1 1060 aa21.26■□□□□ 0.99
CIITA-205ENST00000571186 BRWD3Q6RI45 1802 aa21.26■□□□□ 0.99
CIITA-205ENST00000571186 SIRT1Q96EB6 747 aa21.25■□□□□ 0.99
CIITA-205ENST00000571186 RALGAPBQ86X10 1494 aa21.25■□□□□ 0.99
CIITA-205ENST00000571186 SLIT2O94813 1529 aa21.24■□□□□ 0.99
CIITA-205ENST00000571186 LMOD2Q6P5Q4 547 aa21.24■□□□□ 0.99
CIITA-205ENST00000571186 CABLES1Q8TDN4 633 aa21.24■□□□□ 0.99
CIITA-205ENST00000571186 C14orf93Q9H972 538 aaKnown RBP21.24■□□□□ 0.99
CIITA-205ENST00000571186 GLI3P10071 1580 aa21.23■□□□□ 0.99
CIITA-205ENST00000571186 SAFB2Q14151 953 aaKnown RBP eCLIP21.23■□□□□ 0.99
CIITA-205ENST00000571186 CFAP70Q5T0N1 1121 aa21.23■□□□□ 0.99
CIITA-205ENST00000571186 DHX57Q6P158 1386 aaKnown RBP21.23■□□□□ 0.99
CIITA-205ENST00000571186 USP32Q8NFA0 1604 aa21.22■□□□□ 0.99
CIITA-205ENST00000571186 CCDC9Q9Y3X0 531 aaKnown RBP21.21■□□□□ 0.99
CIITA-205ENST00000571186 PRAM1Q96QH2 718 aa21.2■□□□□ 0.98
CIITA-205ENST00000571186 TNS3Q68CZ2 1445 aa21.2■□□□□ 0.98
CIITA-205ENST00000571186 SEPT12Q8IYM1 358 aa21.19■□□□□ 0.98
CIITA-205ENST00000571186 SF3B2Q13435 895 aaKnown RBP21.18■□□□□ 0.98
CIITA-205ENST00000571186 VPS72Q15906 364 aa21.18■□□□□ 0.98
CIITA-205ENST00000571186 POGKQ9P215 609 aa21.18■□□□□ 0.98
CIITA-205ENST00000571186 BLMP54132 1417 aaPredicted RBP21.18■□□□□ 0.98
CIITA-205ENST00000571186 DEFB132Q7Z7B7 95 aa21.17■□□□□ 0.98
CIITA-205ENST00000571186 PMFBP1Q8TBY8 1022 aa21.17■□□□□ 0.98
CIITA-205ENST00000571186 NWD2Q9ULI1 1742 aa21.16■□□□□ 0.98
CIITA-205ENST00000571186 PLCH1Q4KWH8 1693 aa21.16■□□□□ 0.98
CIITA-205ENST00000571186 SBNO1A3KN83 1393 aa21.16■□□□□ 0.98
CIITA-205ENST00000571186 NRXN1Q9ULB1 1477 aa21.15■□□□□ 0.98
CIITA-205ENST00000571186 ARHGEF10O15013 1369 aa21.14■□□□□ 0.98
CIITA-205ENST00000571186 ACIN1Q9UKV3 1341 aaKnown RBP21.14■□□□□ 0.97
CIITA-205ENST00000571186 FAM83GA6ND36 823 aa21.14■□□□□ 0.97
CIITA-205ENST00000571186 ABCA3Q99758 1704 aa21.13■□□□□ 0.97
CIITA-205ENST00000571186 A0A0G2JS52 829 aa21.12■□□□□ 0.97
CIITA-205ENST00000571186 ONECUT3O60422 494 aaPredicted RBP21.12■□□□□ 0.97
CIITA-205ENST00000571186 MYT1Q01538 1121 aa21.12■□□□□ 0.97
CIITA-205ENST00000571186 KRT27Q7Z3Y8 459 aa21.12■□□□□ 0.97
CIITA-205ENST00000571186 HIRIP3Q9BW71 556 aaPredicted RBP21.1■□□□□ 0.97
CIITA-205ENST00000571186 TRAK1Q9UPV9 953 aa21.1■□□□□ 0.97
CIITA-205ENST00000571186 ANKARQ7Z5J8 1434 aa21.08■□□□□ 0.97
CIITA-205ENST00000571186 DLC1Q96QB1 1528 aa21.08■□□□□ 0.96
CIITA-205ENST00000571186 MINK1Q8N4C8 1332 aaPredicted RBP21.07■□□□□ 0.96
CIITA-205ENST00000571186 FAM98CQ17RN3 349 aaKnown RBP21.07■□□□□ 0.96
CIITA-205ENST00000571186 BTG4Q9NY30 223 aa21.07■□□□□ 0.96
CIITA-205ENST00000571186 KDM2AQ9Y2K7 1162 aa21.07■□□□□ 0.96
CIITA-205ENST00000571186 GPRASP1Q5JY77 1395 aa21.07■□□□□ 0.96
CIITA-205ENST00000571186 TRPM3Q9HCF6 1732 aaPredicted RBP21.05■□□□□ 0.96
CIITA-205ENST00000571186 NRAPQ86VF7 1730 aa21.04■□□□□ 0.96
CIITA-205ENST00000571186 ADGRB2O60241 1585 aa21.03■□□□□ 0.96
CIITA-205ENST00000571186 PAK3O75914 559 aaPredicted RBP21.03■□□□□ 0.96
CIITA-205ENST00000571186 BAG6P46379 1132 aa21.03■□□□□ 0.96
CIITA-205ENST00000571186 NGDNQ8NEJ9 315 aaKnown RBP21.03■□□□□ 0.96
CIITA-205ENST00000571186 ALS2Q96Q42 1657 aa21.02■□□□□ 0.96
CIITA-205ENST00000571186 DCAF11Q8TEB1 546 aa21.02■□□□□ 0.96
CIITA-205ENST00000571186 COL14A1Q05707 1796 aaKnown RBP21.02■□□□□ 0.96
CIITA-205ENST00000571186 PRR36Q9H6K5 1346 aa21.02■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms