RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 CLTCQ00610 1675 aaKnown RBP13.08□□□□□ -0.32
VPS53-206ENST00000570359 PPM1GO15355 546 aaPredicted RBP13.08□□□□□ -0.32
VPS53-206ENST00000570359 PDE3BQ13370 1112 aa13.08□□□□□ -0.32
VPS53-206ENST00000570359 CRBNQ96SW2 442 aa13.08□□□□□ -0.32
VPS53-206ENST00000570359 FBLN1P23142 703 aa13.07□□□□□ -0.32
VPS53-206ENST00000570359 GOLGA2Q08379 1002 aa13.07□□□□□ -0.32
VPS53-206ENST00000570359 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS53-206ENST00000570359 NUTM2FA1L443 756 aa13.07□□□□□ -0.32
VPS53-206ENST00000570359 NEURL4Q96JN8 1562 aa13.07□□□□□ -0.32
VPS53-206ENST00000570359 CGNL1Q0VF96 1302 aa13.06□□□□□ -0.32
VPS53-206ENST00000570359 RNF123Q5XPI4 1314 aa13.06□□□□□ -0.32
VPS53-206ENST00000570359 SLC24A1O60721 1099 aa13.06□□□□□ -0.32
VPS53-206ENST00000570359 U2SURPO15042 1029 aaKnown RBP13.06□□□□□ -0.32
VPS53-206ENST00000570359 CEBPAP49715 358 aaPredicted RBP13.06□□□□□ -0.32
VPS53-206ENST00000570359 SETBP1Q9Y6X0 1596 aa13.06□□□□□ -0.32
VPS53-206ENST00000570359 TULP4Q9NRJ4 1543 aa13.05□□□□□ -0.32
VPS53-206ENST00000570359 ZMYM4Q5VZL5 1548 aa13.05□□□□□ -0.32
VPS53-206ENST00000570359 U2AF1L5P0DN76 240 aaPredicted RBP13.04□□□□□ -0.32
VPS53-206ENST00000570359 U2AF1Q01081 240 aaKnown RBP eCLIP13.04□□□□□ -0.32
VPS53-206ENST00000570359 ARHGAP31Q2M1Z3 1444 aa13.04□□□□□ -0.32
VPS53-206ENST00000570359 DUSP27Q5VZP5 1158 aa13.04□□□□□ -0.32
VPS53-206ENST00000570359 CDK19Q9BWU1 502 aa13.04□□□□□ -0.32
VPS53-206ENST00000570359 CABP1Q9NZU7 370 aa13.04□□□□□ -0.32
VPS53-206ENST00000570359 ARHGEF28Q8N1W1 1705 aaKnown RBP13.04□□□□□ -0.32
VPS53-206ENST00000570359 TXNDC2Q86VQ3 553 aa13.03□□□□□ -0.32
VPS53-206ENST00000570359 SBNO2Q9Y2G9 1366 aa13.03□□□□□ -0.32
VPS53-206ENST00000570359 TMEM131LA2VDJ0 1609 aa13.03□□□□□ -0.32
VPS53-206ENST00000570359 ZC3H13Q5T200 1668 aaKnown RBP13.03□□□□□ -0.32
VPS53-206ENST00000570359 TRHP20396 242 aaPredicted RBP13.03□□□□□ -0.32
VPS53-206ENST00000570359 NCKAP5LQ9HCH0 1330 aa13.03□□□□□ -0.32
VPS53-206ENST00000570359 A0A1W2PP64 1363 aa13.03□□□□□ -0.32
VPS53-206ENST00000570359 MYO3AQ8NEV4 1616 aa13.03□□□□□ -0.32
VPS53-206ENST00000570359 YTHDC2Q9H6S0 1430 aaKnown RBP13.03□□□□□ -0.32
VPS53-206ENST00000570359 BCAR3O75815 825 aa13.02□□□□□ -0.33
VPS53-206ENST00000570359 BCL2L13Q9BXK5 485 aa13.01□□□□□ -0.33
VPS53-206ENST00000570359 CFAP53Q96M91 514 aa13.01□□□□□ -0.33
VPS53-206ENST00000570359 RIMS2Q9UQ26 1411 aa13□□□□□ -0.33
VPS53-206ENST00000570359 NPC1L1Q9UHC9 1359 aa13□□□□□ -0.33
VPS53-206ENST00000570359 NPM2Q86SE8 214 aaKnown RBP13□□□□□ -0.33
VPS53-206ENST00000570359 CANXP27824 592 aaKnown RBP13□□□□□ -0.33
VPS53-206ENST00000570359 TCP11L2Q8N4U5 519 aa13□□□□□ -0.33
VPS53-206ENST00000570359 ANKRD36BQ8N2N9 1353 aa12.99□□□□□ -0.33
VPS53-206ENST00000570359 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
VPS53-206ENST00000570359 ZMYM3Q14202 1370 aa12.99□□□□□ -0.33
VPS53-206ENST00000570359 SLFN5Q08AF3 891 aa12.99□□□□□ -0.33
VPS53-206ENST00000570359 KIF13AQ9H1H9 1805 aa12.98□□□□□ -0.33
VPS53-206ENST00000570359 TERF2IPQ9NYB0 399 aa12.98□□□□□ -0.33
VPS53-206ENST00000570359 ALKQ9UM73 1620 aa12.98□□□□□ -0.33
VPS53-206ENST00000570359 PTPRMP28827 1452 aa12.98□□□□□ -0.33
VPS53-206ENST00000570359 SOX12O15370 315 aa12.98□□□□□ -0.33
VPS53-206ENST00000570359 MSH5O43196 834 aa12.98□□□□□ -0.33
VPS53-206ENST00000570359 HDGFL2Q7Z4V5 671 aaPredicted RBP12.98□□□□□ -0.33
VPS53-206ENST00000570359 A2ML1A8K2U0 1454 aa12.97□□□□□ -0.33
VPS53-206ENST00000570359 ERICH6Q7L0X2 663 aa12.97□□□□□ -0.33
VPS53-206ENST00000570359 WWC1Q8IX03 1113 aa12.97□□□□□ -0.33
VPS53-206ENST00000570359 SLC26A8Q96RN1 970 aa12.97□□□□□ -0.33
VPS53-206ENST00000570359 ZRANB1Q9UGI0 708 aa12.97□□□□□ -0.33
VPS53-206ENST00000570359 ZNF521Q96K83 1311 aa12.96□□□□□ -0.33
VPS53-206ENST00000570359 FYB1O15117 783 aa12.96□□□□□ -0.33
VPS53-206ENST00000570359 METP08581 1390 aa12.96□□□□□ -0.34
VPS53-206ENST00000570359 RUNDC1Q96C34 613 aa12.95□□□□□ -0.34
VPS53-206ENST00000570359 POLR3AO14802 1390 aaPredicted RBP12.95□□□□□ -0.34
VPS53-206ENST00000570359 E9PSI1 815 aa12.93□□□□□ -0.34
VPS53-206ENST00000570359 TSR2Q969E8 191 aaKnown RBP12.93□□□□□ -0.34
VPS53-206ENST00000570359 ATAD2Q6PL18 1390 aa12.93□□□□□ -0.34
VPS53-206ENST00000570359 CLUAP1Q96AJ1 413 aa12.93□□□□□ -0.34
VPS53-206ENST00000570359 ARHGEF40Q8TER5 1519 aa12.93□□□□□ -0.34
VPS53-206ENST00000570359 ZFYVE9O95405 1425 aa12.92□□□□□ -0.34
VPS53-206ENST00000570359 NME9Q86XW9 330 aa12.92□□□□□ -0.34
VPS53-206ENST00000570359 PANK1Q8TE04 598 aa12.92□□□□□ -0.34
VPS53-206ENST00000570359 TNRQ92752 1358 aa12.92□□□□□ -0.34
VPS53-206ENST00000570359 HMOX1P09601 288 aa12.92□□□□□ -0.34
VPS53-206ENST00000570359 TNNQ9UQP3 1299 aa12.92□□□□□ -0.34
VPS53-206ENST00000570359 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.92□□□□□ -0.34
VPS53-206ENST00000570359 LAS1LQ9Y4W2 734 aaKnown RBP12.92□□□□□ -0.34
VPS53-206ENST00000570359 COG6Q9Y2V7 657 aa12.91□□□□□ -0.34
VPS53-206ENST00000570359 MAPK8IP3Q9UPT6 1336 aa12.91□□□□□ -0.34
VPS53-206ENST00000570359 RGS3P49796 1198 aa12.91□□□□□ -0.34
VPS53-206ENST00000570359 ABCC11Q96J66 1382 aa12.9□□□□□ -0.34
VPS53-206ENST00000570359 NKTRP30414 1462 aaKnown RBP12.9□□□□□ -0.34
VPS53-206ENST00000570359 AGLP35573 1532 aa12.9□□□□□ -0.34
VPS53-206ENST00000570359 SHPRHQ149N8 1683 aa12.9□□□□□ -0.34
VPS53-206ENST00000570359 INSRP06213 1382 aa12.9□□□□□ -0.34
VPS53-206ENST00000570359 LTKP29376 864 aa12.9□□□□□ -0.34
VPS53-206ENST00000570359 RRS1Q15050 365 aaKnown RBP12.9□□□□□ -0.34
VPS53-206ENST00000570359 EMILIN1Q9Y6C2 1016 aa12.9□□□□□ -0.34
VPS53-206ENST00000570359 PLEKHG5O94827 1062 aa12.89□□□□□ -0.35
VPS53-206ENST00000570359 PPP6R1Q9UPN7 881 aa12.89□□□□□ -0.35
VPS53-206ENST00000570359 WASLO00401 505 aaPredicted RBP12.89□□□□□ -0.35
VPS53-206ENST00000570359 SPATA31D1Q6ZQQ2 1576 aa12.89□□□□□ -0.35
VPS53-206ENST00000570359 NUDT16Q96DE0 195 aaKnown RBP12.89□□□□□ -0.35
VPS53-206ENST00000570359 CD163L1Q9NR16 1453 aa12.88□□□□□ -0.35
VPS53-206ENST00000570359 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS53-206ENST00000570359 DIAPH1O60610 1272 aaKnown RBP12.88□□□□□ -0.35
VPS53-206ENST00000570359 PPIP5K1Q6PFW1 1433 aa12.88□□□□□ -0.35
VPS53-206ENST00000570359 RBM33Q96EV2 1170 aaKnown RBP12.87□□□□□ -0.35
VPS53-206ENST00000570359 THUMPD2Q9BTF0 503 aaKnown RBP12.86□□□□□ -0.35
VPS53-206ENST00000570359 TRMT2AQ8IZ69 625 aaKnown RBP12.86□□□□□ -0.35
VPS53-206ENST00000570359 PMFBP1Q8TBY8 1022 aa12.86□□□□□ -0.35
VPS53-206ENST00000570359 NSD2O96028 1365 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms