RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 RNF19BQ6ZMZ0 732 aa7□□□□□ -1.29
VPS39-212ENST00000570023 FAM160A2Q8N612 972 aaPredicted RBP7□□□□□ -1.29
VPS39-212ENST00000570023 RSPH6AQ9H0K4 717 aa7□□□□□ -1.29
VPS39-212ENST00000570023 EIF4ENIF1Q9NRA8 985 aaKnown RBP7□□□□□ -1.29
VPS39-212ENST00000570023 PLEKHG3A1L390 1219 aa6.99□□□□□ -1.29
VPS39-212ENST00000570023 GGCXP38435 758 aa6.99□□□□□ -1.29
VPS39-212ENST00000570023 TUSC1Q2TAM9 212 aa6.99□□□□□ -1.29
VPS39-212ENST00000570023 RSBN1LQ6PCB5 846 aaPredicted RBP6.99□□□□□ -1.29
VPS39-212ENST00000570023 RIC3Q7Z5B4 369 aa6.99□□□□□ -1.29
VPS39-212ENST00000570023 MSS51Q4VC12 460 aa6.98□□□□□ -1.29
VPS39-212ENST00000570023 USB1Q9BQ65 265 aaKnown RBP6.98□□□□□ -1.29
VPS39-212ENST00000570023 SLC6A16Q9GZN6 736 aa6.98□□□□□ -1.29
VPS39-212ENST00000570023 S1PR4O95977 384 aa6.97□□□□□ -1.29
VPS39-212ENST00000570023 RNF223E7ERA6 249 aa6.96□□□□□ -1.3
VPS39-212ENST00000570023 MMP16P51512 607 aa6.96□□□□□ -1.3
VPS39-212ENST00000570023 SKIV2LQ15477 1246 aaKnown RBP6.96□□□□□ -1.3
VPS39-212ENST00000570023 SH3D19Q5HYK7 790 aa6.96□□□□□ -1.3
VPS39-212ENST00000570023 PRPF38BQ5VTL8 546 aaKnown RBP6.96□□□□□ -1.3
VPS39-212ENST00000570023 RETREG3Q86VR2 466 aa6.96□□□□□ -1.3
VPS39-212ENST00000570023 ANKLE1Q8NAG6 615 aa6.96□□□□□ -1.3
VPS39-212ENST00000570023 SPDYE5A6NIY4 337 aa6.95□□□□□ -1.3
VPS39-212ENST00000570023 SYMPKQ92797 1274 aaKnown RBP6.95□□□□□ -1.3
VPS39-212ENST00000570023 GOPCQ9HD26 462 aa6.95□□□□□ -1.3
VPS39-212ENST00000570023 LIMD1Q9UGP4 676 aa6.95□□□□□ -1.3
VPS39-212ENST00000570023 PCDHB15Q9Y5E8 787 aa6.95□□□□□ -1.3
VPS39-212ENST00000570023 C6orf229H3BNL8 230 aa6.94□□□□□ -1.3
VPS39-212ENST00000570023 DXOO77932 396 aaKnown RBP6.94□□□□□ -1.3
VPS39-212ENST00000570023 MTMR2Q13614 643 aa6.94□□□□□ -1.3
VPS39-212ENST00000570023 LILRB3O75022 631 aa6.93□□□□□ -1.3
VPS39-212ENST00000570023 HRCP23327 699 aa6.93□□□□□ -1.3
VPS39-212ENST00000570023 CLK2P49760 499 aaKnown RBP6.93□□□□□ -1.3
VPS39-212ENST00000570023 IL27Q8NEV9 243 aa6.93□□□□□ -1.3
VPS39-212ENST00000570023 ZBTB3Q9H5J0 574 aa6.93□□□□□ -1.3
VPS39-212ENST00000570023 POLR3EQ9NVU0 708 aa6.93□□□□□ -1.3
VPS39-212ENST00000570023 PPEF1O14829 653 aaPredicted RBP6.92□□□□□ -1.3
VPS39-212ENST00000570023 DESI1Q6ICB0 168 aa6.92□□□□□ -1.3
VPS39-212ENST00000570023 PRDM9Q9NQV7 894 aa6.92□□□□□ -1.3
VPS39-212ENST00000570023 V9GY48 417 aaPredicted RBP6.92□□□□□ -1.3
VPS39-212ENST00000570023 JUNDP17535 347 aa6.91□□□□□ -1.3
VPS39-212ENST00000570023 PRR7Q8TB68 274 aa6.91□□□□□ -1.3
VPS39-212ENST00000570023 EMID1Q96A84 441 aaPredicted RBP6.91□□□□□ -1.3
VPS39-212ENST00000570023 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS39-212ENST00000570023 QPCTQ16769 361 aa6.9□□□□□ -1.3
VPS39-212ENST00000570023 CABLES1Q8TDN4 633 aa6.9□□□□□ -1.3
VPS39-212ENST00000570023 CFAP99D6REC4 459 aa6.89□□□□□ -1.31
VPS39-212ENST00000570023 PLA2G2CQ5R387 149 aa6.89□□□□□ -1.31
VPS39-212ENST00000570023 PROCA1Q8NCQ7 364 aaPredicted RBP6.89□□□□□ -1.31
VPS39-212ENST00000570023 PRKD2Q9BZL6 878 aa6.89□□□□□ -1.31
VPS39-212ENST00000570023 FCF1Q9Y324 198 aaKnown RBP6.89□□□□□ -1.31
VPS39-212ENST00000570023 SLC19A1P41440 591 aa6.88□□□□□ -1.31
VPS39-212ENST00000570023 CSPP1Q1MSJ5 1256 aa6.88□□□□□ -1.31
VPS39-212ENST00000570023 RTL5Q5HYW3 569 aaPredicted RBP6.88□□□□□ -1.31
VPS39-212ENST00000570023 PPP2R2DQ66LE6 453 aa6.88□□□□□ -1.31
VPS39-212ENST00000570023 NUTM2BA6NNL0 878 aaPredicted RBP6.87□□□□□ -1.31
VPS39-212ENST00000570023 NUTM2EB1AL46 878 aaPredicted RBP6.87□□□□□ -1.31
VPS39-212ENST00000570023 RPIAP49247 311 aa6.87□□□□□ -1.31
VPS39-212ENST00000570023 PTPRNQ16849 979 aa6.87□□□□□ -1.31
VPS39-212ENST00000570023 NUTM2DQ5VT03 806 aaPredicted RBP6.87□□□□□ -1.31
VPS39-212ENST00000570023 LYPD8Q6UX82 237 aa6.87□□□□□ -1.31
VPS39-212ENST00000570023 LIAT1Q6ZQX7 453 aa6.87□□□□□ -1.31
VPS39-212ENST00000570023 NUTM2AQ8IVF1 878 aaPredicted RBP6.87□□□□□ -1.31
VPS39-212ENST00000570023 PCMTD1Q96MG8 357 aaPredicted RBP6.86□□□□□ -1.31
VPS39-212ENST00000570023 SPRYD7Q5W111 196 aa6.85□□□□□ -1.31
VPS39-212ENST00000570023 FBXO31Q5XUX0 539 aaPredicted RBP6.85□□□□□ -1.31
VPS39-212ENST00000570023 NUDT12Q9BQG2 462 aa6.85□□□□□ -1.31
VPS39-212ENST00000570023 EVA1BQ9NVM1 165 aa6.85□□□□□ -1.31
VPS39-212ENST00000570023 CCNYL3P0C7X3 344 aa6.84□□□□□ -1.31
VPS39-212ENST00000570023 CD2BP2O95400 341 aaKnown RBP6.83□□□□□ -1.32
VPS39-212ENST00000570023 ZNF598Q86UK7 904 aaKnown RBP6.83□□□□□ -1.32
VPS39-212ENST00000570023 PER1O15534 1290 aaPredicted RBP6.82□□□□□ -1.32
VPS39-212ENST00000570023 ZBTB24O43167 697 aaPredicted RBP6.82□□□□□ -1.32
VPS39-212ENST00000570023 KCNH2Q12809 1159 aa6.82□□□□□ -1.32
VPS39-212ENST00000570023 PTCRAQ6ISU1 281 aaPredicted RBP6.82□□□□□ -1.32
VPS39-212ENST00000570023 CCDC24Q8N4L8 307 aa6.82□□□□□ -1.32
VPS39-212ENST00000570023 HELBQ8NG08 1087 aaPredicted RBP6.82□□□□□ -1.32
VPS39-212ENST00000570023 F12P00748 615 aaPredicted RBP6.81□□□□□ -1.32
VPS39-212ENST00000570023 RFC5P40937 340 aa6.81□□□□□ -1.32
VPS39-212ENST00000570023 CTDSPL2Q05D32 466 aa6.8□□□□□ -1.32
VPS39-212ENST00000570023 TRIM32Q13049 653 aa6.8□□□□□ -1.32
VPS39-212ENST00000570023 ATP1B4Q9UN42 357 aaPredicted RBP6.8□□□□□ -1.32
VPS39-212ENST00000570023 TMEM259Q4ZIN3 620 aa6.79□□□□□ -1.32
VPS39-212ENST00000570023 ZNF697Q5TEC3 545 aa6.79□□□□□ -1.32
VPS39-212ENST00000570023 TRIM67Q6ZTA4 783 aa6.79□□□□□ -1.32
VPS39-212ENST00000570023 TSC1Q92574 1164 aa6.79□□□□□ -1.32
VPS39-212ENST00000570023 WNT7BP56706 349 aa6.78□□□□□ -1.32
VPS39-212ENST00000570023 PRR20EP86478 221 aa6.78□□□□□ -1.32
VPS39-212ENST00000570023 PRR20CP86479 221 aa6.78□□□□□ -1.32
VPS39-212ENST00000570023 PRR20DP86480 221 aa6.78□□□□□ -1.32
VPS39-212ENST00000570023 PRR20BP86481 221 aa6.78□□□□□ -1.32
VPS39-212ENST00000570023 PRR20AP86496 221 aa6.78□□□□□ -1.32
VPS39-212ENST00000570023 UNC93B1Q9H1C4 597 aa6.78□□□□□ -1.32
VPS39-212ENST00000570023 GDF9O60383 454 aa6.77□□□□□ -1.33
VPS39-212ENST00000570023 AP1G2O75843 785 aa6.77□□□□□ -1.33
VPS39-212ENST00000570023 PKD2L1Q9P0L9 805 aa6.77□□□□□ -1.33
VPS39-212ENST00000570023 MAP10Q9P2G4 905 aa6.77□□□□□ -1.33
VPS39-212ENST00000570023 SKOR1P84550 965 aa6.76□□□□□ -1.33
VPS39-212ENST00000570023 LAPTM4AQ15012 233 aa6.76□□□□□ -1.33
VPS39-212ENST00000570023 IRX2Q9BZI1 471 aaPredicted RBP6.76□□□□□ -1.33
VPS39-212ENST00000570023 WNT7AO00755 349 aa6.75□□□□□ -1.33
VPS39-212ENST00000570023 USP17L8P0C7I0 530 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms