RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 DCCP43146 1447 aa12.9□□□□□ -0.34
CHD9-219ENST00000569225 PLEKHH1Q9ULM0 1364 aa12.89□□□□□ -0.35
CHD9-219ENST00000569225 SAFB2Q14151 953 aaKnown RBP eCLIP12.89□□□□□ -0.35
CHD9-219ENST00000569225 CENPJQ9HC77 1338 aaPredicted RBP12.89□□□□□ -0.35
CHD9-219ENST00000569225 UBAP1LF5GYI3 381 aa12.89□□□□□ -0.35
CHD9-219ENST00000569225 ZEB1P37275 1124 aaPredicted RBP12.87□□□□□ -0.35
CHD9-219ENST00000569225 MINK1Q8N4C8 1332 aaPredicted RBP12.86□□□□□ -0.35
CHD9-219ENST00000569225 USP47Q96K76 1375 aa12.85□□□□□ -0.35
CHD9-219ENST00000569225 SLC24A1O60721 1099 aa12.85□□□□□ -0.35
CHD9-219ENST00000569225 SLAIN2Q9P270 581 aa12.85□□□□□ -0.35
CHD9-219ENST00000569225 CDC42BPGQ6DT37 1551 aa12.84□□□□□ -0.35
CHD9-219ENST00000569225 ARHGEF28Q8N1W1 1705 aaKnown RBP12.84□□□□□ -0.35
CHD9-219ENST00000569225 HIRIP3Q9BW71 556 aaPredicted RBP12.84□□□□□ -0.35
CHD9-219ENST00000569225 XIRP1Q702N8 1843 aaKnown RBP12.83□□□□□ -0.36
CHD9-219ENST00000569225 FBXO41Q8TF61 875 aa12.83□□□□□ -0.36
CHD9-219ENST00000569225 NALCNQ8IZF0 1738 aa12.83□□□□□ -0.36
CHD9-219ENST00000569225 SBNO2Q9Y2G9 1366 aa12.83□□□□□ -0.36
CHD9-219ENST00000569225 SCAF1Q9H7N4 1312 aaKnown RBP12.83□□□□□ -0.36
CHD9-219ENST00000569225 WASLO00401 505 aaPredicted RBP12.82□□□□□ -0.36
CHD9-219ENST00000569225 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.82□□□□□ -0.36
CHD9-219ENST00000569225 ADGRB2O60241 1585 aa12.82□□□□□ -0.36
CHD9-219ENST00000569225 EIF4G2P78344 907 aaKnown RBP eCLIP12.82□□□□□ -0.36
CHD9-219ENST00000569225 PIP4K2BP78356 416 aa12.82□□□□□ -0.36
CHD9-219ENST00000569225 MST1RQ04912 1400 aa12.81□□□□□ -0.36
CHD9-219ENST00000569225 EVC2Q86UK5 1308 aa12.81□□□□□ -0.36
CHD9-219ENST00000569225 ST20-MTHFSA0A0A6YYL1 179 aa12.81□□□□□ -0.36
CHD9-219ENST00000569225 ANKARQ7Z5J8 1434 aa12.8□□□□□ -0.36
CHD9-219ENST00000569225 CDK19Q9BWU1 502 aa12.8□□□□□ -0.36
CHD9-219ENST00000569225 C1orf167Q5SNV9 1468 aa12.8□□□□□ -0.36
CHD9-219ENST00000569225 SRPK2P78362 688 aaKnown RBP12.79□□□□□ -0.36
CHD9-219ENST00000569225 QRICH2Q9H0J4 1663 aa12.78□□□□□ -0.36
CHD9-219ENST00000569225 NUTM2FA1L443 756 aa12.78□□□□□ -0.36
CHD9-219ENST00000569225 ESCO1Q5FWF5 840 aa12.78□□□□□ -0.36
CHD9-219ENST00000569225 TMF1P82094 1093 aa12.77□□□□□ -0.37
CHD9-219ENST00000569225 TESK2Q96S53 571 aa12.77□□□□□ -0.37
CHD9-219ENST00000569225 TULP4Q9NRJ4 1543 aa12.77□□□□□ -0.37
CHD9-219ENST00000569225 HSPA5P11021 654 aaKnown RBP12.76□□□□□ -0.37
CHD9-219ENST00000569225 CDCA8Q53HL2 280 aa12.76□□□□□ -0.37
CHD9-219ENST00000569225 BRINP3Q76B58 766 aa12.76□□□□□ -0.37
CHD9-219ENST00000569225 NUDT16Q96DE0 195 aaKnown RBP12.76□□□□□ -0.37
CHD9-219ENST00000569225 FMN2Q9NZ56 1722 aa12.76□□□□□ -0.37
CHD9-219ENST00000569225 PUS7Q96PZ0 661 aaKnown RBP12.75□□□□□ -0.37
CHD9-219ENST00000569225 CABP2Q9NPB3 220 aa12.75□□□□□ -0.37
CHD9-219ENST00000569225 CCDC61Q9Y6R9 512 aa12.75□□□□□ -0.37
CHD9-219ENST00000569225 ATAD2Q6PL18 1390 aa12.74□□□□□ -0.37
CHD9-219ENST00000569225 ORAI2Q96SN7 254 aa12.74□□□□□ -0.37
CHD9-219ENST00000569225 PHF8Q9UPP1 1060 aa12.74□□□□□ -0.37
CHD9-219ENST00000569225 PRR36Q9H6K5 1346 aa12.73□□□□□ -0.37
CHD9-219ENST00000569225 ATP7BP35670 1465 aa12.73□□□□□ -0.37
CHD9-219ENST00000569225 ROBO1Q9Y6N7 1651 aa12.72□□□□□ -0.37
CHD9-219ENST00000569225 NPHP3Q7Z494 1330 aa12.72□□□□□ -0.37
CHD9-219ENST00000569225 NGDNQ8NEJ9 315 aaKnown RBP12.71□□□□□ -0.37
CHD9-219ENST00000569225 DISP3Q9P2K9 1392 aa12.71□□□□□ -0.38
CHD9-219ENST00000569225 PPIP5K1Q6PFW1 1433 aa12.7□□□□□ -0.38
CHD9-219ENST00000569225 PLEKHG3A1L390 1219 aa12.7□□□□□ -0.38
CHD9-219ENST00000569225 FOXO3O43524 673 aa12.7□□□□□ -0.38
CHD9-219ENST00000569225 KIF1AQ12756 1690 aa12.7□□□□□ -0.38
CHD9-219ENST00000569225 HSPA1LP34931 641 aa12.7□□□□□ -0.38
CHD9-219ENST00000569225 PMFBP1Q8TBY8 1022 aa12.7□□□□□ -0.38
CHD9-219ENST00000569225 USP32Q8NFA0 1604 aa12.69□□□□□ -0.38
CHD9-219ENST00000569225 NINLQ9Y2I6 1382 aa12.69□□□□□ -0.38
CHD9-219ENST00000569225 PSME1Q06323 249 aa12.69□□□□□ -0.38
CHD9-219ENST00000569225 CABP1Q9NZU7 370 aa12.69□□□□□ -0.38
CHD9-219ENST00000569225 AHDC1Q5TGY3 1603 aaPredicted RBP12.69□□□□□ -0.38
CHD9-219ENST00000569225 ILDR1Q86SU0 546 aaPredicted RBP12.68□□□□□ -0.38
CHD9-219ENST00000569225 TMC1Q8TDI8 760 aa12.68□□□□□ -0.38
CHD9-219ENST00000569225 POLR3AO14802 1390 aaPredicted RBP12.67□□□□□ -0.38
CHD9-219ENST00000569225 KRT28Q7Z3Y7 464 aa12.67□□□□□ -0.38
CHD9-219ENST00000569225 LRRC59Q96AG4 307 aaKnown RBP12.67□□□□□ -0.38
CHD9-219ENST00000569225 ACEP12821 1306 aa12.67□□□□□ -0.38
CHD9-219ENST00000569225 SOS2Q07890 1332 aaPredicted RBP12.67□□□□□ -0.38
CHD9-219ENST00000569225 ITSN1Q15811 1721 aa12.67□□□□□ -0.38
CHD9-219ENST00000569225 DDX17Q92841 729 aaKnown RBP12.66□□□□□ -0.38
CHD9-219ENST00000569225 TERF2IPQ9NYB0 399 aa12.66□□□□□ -0.38
CHD9-219ENST00000569225 TOPAZ1Q8N9V7 1692 aa12.66□□□□□ -0.38
CHD9-219ENST00000569225 HDGFL2Q7Z4V5 671 aaPredicted RBP12.65□□□□□ -0.38
CHD9-219ENST00000569225 POLR3GLQ9BT43 218 aa12.65□□□□□ -0.38
CHD9-219ENST00000569225 ZNF692Q9BU19 519 aaPredicted RBP12.65□□□□□ -0.38
CHD9-219ENST00000569225 BRD4O60885 1362 aaPredicted RBP12.65□□□□□ -0.38
CHD9-219ENST00000569225 XPCQ01831 940 aaPredicted RBP12.65□□□□□ -0.38
CHD9-219ENST00000569225 NHSL1Q5SYE7 1610 aa12.64□□□□□ -0.39
CHD9-219ENST00000569225 PXDNQ92626 1479 aa12.64□□□□□ -0.39
CHD9-219ENST00000569225 SBNO1A3KN83 1393 aa12.64□□□□□ -0.39
CHD9-219ENST00000569225 JCADQ9P266 1359 aa12.64□□□□□ -0.39
CHD9-219ENST00000569225 SLC12A5Q9H2X9 1139 aa12.63□□□□□ -0.39
CHD9-219ENST00000569225 PHLPP1O60346 1717 aa12.63□□□□□ -0.39
CHD9-219ENST00000569225 PAK3O75914 559 aaPredicted RBP12.62□□□□□ -0.39
CHD9-219ENST00000569225 COL16A1Q07092 1604 aaPredicted RBP12.62□□□□□ -0.39
CHD9-219ENST00000569225 ARHGEF10O15013 1369 aa12.62□□□□□ -0.39
CHD9-219ENST00000569225 KTN1Q86UP2 1357 aaKnown RBP12.62□□□□□ -0.39
CHD9-219ENST00000569225 KIF7Q2M1P5 1343 aa12.62□□□□□ -0.39
CHD9-219ENST00000569225 SPATA31A3Q5VYP0 1347 aa12.62□□□□□ -0.39
CHD9-219ENST00000569225 USP6P35125 1406 aa12.61□□□□□ -0.39
CHD9-219ENST00000569225 CPSF1Q10570 1443 aaKnown RBP12.61□□□□□ -0.39
CHD9-219ENST00000569225 TNS3Q68CZ2 1445 aa12.61□□□□□ -0.39
CHD9-219ENST00000569225 RGPD8O14715 1765 aaPredicted RBP12.61□□□□□ -0.39
CHD9-219ENST00000569225 ANKRD36BQ8N2N9 1353 aa12.61□□□□□ -0.39
CHD9-219ENST00000569225 LMOD2Q6P5Q4 547 aa12.61□□□□□ -0.39
CHD9-219ENST00000569225 C11orf95C9JLR9 678 aaPredicted RBP12.6□□□□□ -0.39
CHD9-219ENST00000569225 A0A1W2PP64 1363 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms