RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 PSDA5PKW4 1024 aaPredicted RBP18.4■□□□□ 0.54
VPS9D1-207ENST00000568691 HRCP23327 699 aa18.4■□□□□ 0.54
VPS9D1-207ENST00000568691 MARF1Q9Y4F3 1742 aaKnown RBP18.4■□□□□ 0.54
VPS9D1-207ENST00000568691 NEXMIFQ5QGS0 1516 aa18.39■□□□□ 0.54
VPS9D1-207ENST00000568691 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.38■□□□□ 0.53
VPS9D1-207ENST00000568691 XPCQ01831 940 aaPredicted RBP18.38■□□□□ 0.53
VPS9D1-207ENST00000568691 FAM50AQ14320 339 aaKnown RBP18.37■□□□□ 0.53
VPS9D1-207ENST00000568691 UNC5CLQ8IV45 518 aa18.37■□□□□ 0.53
VPS9D1-207ENST00000568691 PRAG1Q86YV5 1406 aa18.37■□□□□ 0.53
VPS9D1-207ENST00000568691 NUP155O75694 1391 aa18.35■□□□□ 0.53
VPS9D1-207ENST00000568691 SEPT12Q8IYM1 358 aa18.35■□□□□ 0.53
VPS9D1-207ENST00000568691 SPHKAPQ2M3C7 1700 aa18.35■□□□□ 0.53
VPS9D1-207ENST00000568691 ZNF326Q5BKZ1 582 aaKnown RBP18.34■□□□□ 0.53
VPS9D1-207ENST00000568691 NPHP3Q7Z494 1330 aa18.33■□□□□ 0.53
VPS9D1-207ENST00000568691 FOXO3O43524 673 aa18.33■□□□□ 0.52
VPS9D1-207ENST00000568691 ONECUT3O60422 494 aaPredicted RBP18.32■□□□□ 0.52
VPS9D1-207ENST00000568691 ESCO1Q5FWF5 840 aa18.31■□□□□ 0.52
VPS9D1-207ENST00000568691 CLTCL1P53675 1640 aa18.3■□□□□ 0.52
VPS9D1-207ENST00000568691 ROCK1Q13464 1354 aa18.3■□□□□ 0.52
VPS9D1-207ENST00000568691 SF3B2Q13435 895 aaKnown RBP18.28■□□□□ 0.52
VPS9D1-207ENST00000568691 CDC42BPGQ6DT37 1551 aa18.28■□□□□ 0.52
VPS9D1-207ENST00000568691 HFM1A2PYH4 1435 aa18.27■□□□□ 0.52
VPS9D1-207ENST00000568691 VPS72Q15906 364 aa18.27■□□□□ 0.52
VPS9D1-207ENST00000568691 USP32Q8NFA0 1604 aa18.27■□□□□ 0.51
VPS9D1-207ENST00000568691 SPATA31A3Q5VYP0 1347 aa18.26■□□□□ 0.51
VPS9D1-207ENST00000568691 KRT27Q7Z3Y8 459 aa18.26■□□□□ 0.51
VPS9D1-207ENST00000568691 APLP2Q06481 763 aa18.25■□□□□ 0.51
VPS9D1-207ENST00000568691 EN1Q05925 392 aaPredicted RBP18.24■□□□□ 0.51
VPS9D1-207ENST00000568691 R3HDM1Q15032 1099 aaKnown RBP18.24■□□□□ 0.51
VPS9D1-207ENST00000568691 NUTM2FA1L443 756 aa18.23■□□□□ 0.51
VPS9D1-207ENST00000568691 BAG6P46379 1132 aa18.22■□□□□ 0.51
VPS9D1-207ENST00000568691 CABLES1Q8TDN4 633 aa18.22■□□□□ 0.51
VPS9D1-207ENST00000568691 NAIPQ13075 1403 aa18.22■□□□□ 0.51
VPS9D1-207ENST00000568691 PLCH1Q4KWH8 1693 aa18.19■□□□□ 0.5
VPS9D1-207ENST00000568691 FAM182BQ5T319 152 aa18.19■□□□□ 0.5
VPS9D1-207ENST00000568691 YY1P25490 414 aa18.18■□□□□ 0.5
VPS9D1-207ENST00000568691 WAPLQ7Z5K2 1190 aa18.18■□□□□ 0.5
VPS9D1-207ENST00000568691 LRPPRCP42704 1394 aaKnown RBP18.17■□□□□ 0.5
VPS9D1-207ENST00000568691 PLEKHH1Q9ULM0 1364 aa18.17■□□□□ 0.5
VPS9D1-207ENST00000568691 DISP2A7MBM2 1401 aa18.17■□□□□ 0.5
VPS9D1-207ENST00000568691 VGFO15240 615 aaPredicted RBP18.17■□□□□ 0.5
VPS9D1-207ENST00000568691 NWD2Q9ULI1 1742 aa18.16■□□□□ 0.5
VPS9D1-207ENST00000568691 FAM83GA6ND36 823 aa18.16■□□□□ 0.5
VPS9D1-207ENST00000568691 KRT28Q7Z3Y7 464 aa18.16■□□□□ 0.5
VPS9D1-207ENST00000568691 EZH2Q15910 746 aaKnown RBP18.14■□□□□ 0.49
VPS9D1-207ENST00000568691 FAM98CQ17RN3 349 aaKnown RBP18.14■□□□□ 0.49
VPS9D1-207ENST00000568691 CCDC9Q9Y3X0 531 aaKnown RBP18.14■□□□□ 0.49
VPS9D1-207ENST00000568691 ABCA3Q99758 1704 aa18.14■□□□□ 0.49
VPS9D1-207ENST00000568691 CCDC144AA2RUR9 1427 aa18.14■□□□□ 0.49
VPS9D1-207ENST00000568691 TECPR2O15040 1411 aa18.14■□□□□ 0.49
VPS9D1-207ENST00000568691 TNS3Q68CZ2 1445 aa18.14■□□□□ 0.49
VPS9D1-207ENST00000568691 NRAPQ86VF7 1730 aa18.13■□□□□ 0.49
VPS9D1-207ENST00000568691 TNS1Q9HBL0 1735 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-207ENST00000568691 PLEKHG5O94827 1062 aa18.12■□□□□ 0.49
VPS9D1-207ENST00000568691 CAMKK2Q96RR4 588 aa18.12■□□□□ 0.49
VPS9D1-207ENST00000568691 FMN2Q9NZ56 1722 aa18.12■□□□□ 0.49
VPS9D1-207ENST00000568691 KIF1BO60333 1816 aa18.12■□□□□ 0.49
VPS9D1-207ENST00000568691 RGPD1P0DJD0 1748 aa18.11■□□□□ 0.49
VPS9D1-207ENST00000568691 PPLO60437 1756 aa18.09■□□□□ 0.49
VPS9D1-207ENST00000568691 KIF1AQ12756 1690 aa18.09■□□□□ 0.49
VPS9D1-207ENST00000568691 RPGRIP1LQ68CZ1 1315 aa18.09■□□□□ 0.49
VPS9D1-207ENST00000568691 ADGRF5Q8IZF2 1346 aa18.09■□□□□ 0.49
VPS9D1-207ENST00000568691 STK26Q9P289 416 aa18.09■□□□□ 0.49
VPS9D1-207ENST00000568691 ITGAEP38570 1179 aa18.08■□□□□ 0.48
VPS9D1-207ENST00000568691 THSD7AQ9UPZ6 1657 aa18.08■□□□□ 0.48
VPS9D1-207ENST00000568691 A0A0G2JS52 829 aa18.07■□□□□ 0.48
VPS9D1-207ENST00000568691 MYT1Q01538 1121 aa18.07■□□□□ 0.48
VPS9D1-207ENST00000568691 SBNO1A3KN83 1393 aa18.06■□□□□ 0.48
VPS9D1-207ENST00000568691 ABCC11Q96J66 1382 aa18.06■□□□□ 0.48
VPS9D1-207ENST00000568691 SPATA31A5Q5VU36 1347 aa18.05■□□□□ 0.48
VPS9D1-207ENST00000568691 SPATA31A7Q8IWB4 1347 aa18.05■□□□□ 0.48
VPS9D1-207ENST00000568691 HAP1P54257 671 aaPredicted RBP18.05■□□□□ 0.48
VPS9D1-207ENST00000568691 TMEM132EQ6IEE7 984 aa18.05■□□□□ 0.48
VPS9D1-207ENST00000568691 BTG4Q9NY30 223 aa18.05■□□□□ 0.48
VPS9D1-207ENST00000568691 PHF8Q9UPP1 1060 aa18.05■□□□□ 0.48
VPS9D1-207ENST00000568691 NRXN1Q9ULB1 1477 aa18.04■□□□□ 0.48
VPS9D1-207ENST00000568691 RGPD8O14715 1765 aaPredicted RBP18.04■□□□□ 0.48
VPS9D1-207ENST00000568691 TRIM37O94972 964 aa18.02■□□□□ 0.48
VPS9D1-207ENST00000568691 KNDC1Q76NI1 1749 aa18.01■□□□□ 0.47
VPS9D1-207ENST00000568691 ARHGEF10O15013 1369 aa18.01■□□□□ 0.47
VPS9D1-207ENST00000568691 PSME1Q06323 249 aa18■□□□□ 0.47
VPS9D1-207ENST00000568691 LMOD2Q6P5Q4 547 aa18■□□□□ 0.47
VPS9D1-207ENST00000568691 RREB1Q92766 1687 aa17.99■□□□□ 0.47
VPS9D1-207ENST00000568691 RRBP1Q9P2E9 1410 aaKnown RBP17.99■□□□□ 0.47
VPS9D1-207ENST00000568691 NUP188Q5SRE5 1749 aa17.98■□□□□ 0.47
VPS9D1-207ENST00000568691 TRPM3Q9HCF6 1732 aaPredicted RBP17.98■□□□□ 0.47
VPS9D1-207ENST00000568691 YTHDC2Q9H6S0 1430 aaKnown RBP17.98■□□□□ 0.47
VPS9D1-207ENST00000568691 COL14A1Q05707 1796 aaKnown RBP17.97■□□□□ 0.47
VPS9D1-207ENST00000568691 CAMTA1Q9Y6Y1 1673 aa17.97■□□□□ 0.47
VPS9D1-207ENST00000568691 APBA3O96018 575 aa17.97■□□□□ 0.47
VPS9D1-207ENST00000568691 IFT172Q9UG01 1749 aa17.97■□□□□ 0.47
VPS9D1-207ENST00000568691 UTRNP46939 3433 aa17.97■□□□□ 0.47
VPS9D1-207ENST00000568691 ADGRB2O60241 1585 aa17.96■□□□□ 0.47
VPS9D1-207ENST00000568691 PARD3Q8TEW0 1356 aa17.96■□□□□ 0.47
VPS9D1-207ENST00000568691 PMFBP1Q8TBY8 1022 aa17.95■□□□□ 0.46
VPS9D1-207ENST00000568691 PIK3C2GO75747 1445 aa17.95■□□□□ 0.46
VPS9D1-207ENST00000568691 SPATA31E1Q6ZUB1 1445 aa17.95■□□□□ 0.46
VPS9D1-207ENST00000568691 SPATA31A1Q5TZJ5 1347 aa17.95■□□□□ 0.46
VPS9D1-207ENST00000568691 NINLQ9Y2I6 1382 aa17.94■□□□□ 0.46
VPS9D1-207ENST00000568691 ALS2Q96Q42 1657 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms