RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 FOXD4L5Q5VV16 416 aaPredicted RBP4.83□□□□□ -1.64
VPS35-209ENST00000568642 TYW1BQ6NUM6 668 aa4.83□□□□□ -1.64
VPS35-209ENST00000568642 ZNF598Q86UK7 904 aaKnown RBP4.83□□□□□ -1.64
VPS35-209ENST00000568642 FOXD4L4Q8WXT5 416 aaPredicted RBP4.83□□□□□ -1.64
VPS35-209ENST00000568642 TMUB1Q9BVT8 246 aa4.83□□□□□ -1.64
VPS35-209ENST00000568642 URB2Q14146 1524 aaKnown RBP4.82□□□□□ -1.64
VPS35-209ENST00000568642 FANCD2Q9BXW9 1451 aa4.82□□□□□ -1.64
VPS35-209ENST00000568642 NCKAP5LQ9HCH0 1330 aa4.82□□□□□ -1.64
VPS35-209ENST00000568642 PLEKHG3A1L390 1219 aa4.82□□□□□ -1.64
VPS35-209ENST00000568642 C11orf95C9JLR9 678 aaPredicted RBP4.82□□□□□ -1.64
VPS35-209ENST00000568642 RNF223E7ERA6 249 aa4.82□□□□□ -1.64
VPS35-209ENST00000568642 C6orf132Q5T0Z8 1188 aa4.82□□□□□ -1.64
VPS35-209ENST00000568642 FBXW7Q969H0 707 aa4.82□□□□□ -1.64
VPS35-209ENST00000568642 KDM4CQ9H3R0 1056 aa4.82□□□□□ -1.64
VPS35-209ENST00000568642 A6NJR5 290 aa4.81□□□□□ -1.64
VPS35-209ENST00000568642 TRAK2O60296 914 aa4.81□□□□□ -1.64
VPS35-209ENST00000568642 LORP23490 312 aaPredicted RBP4.81□□□□□ -1.64
VPS35-209ENST00000568642 COPS2P61201 443 aa4.81□□□□□ -1.64
VPS35-209ENST00000568642 ZNF697Q5TEC3 545 aa4.81□□□□□ -1.64
VPS35-209ENST00000568642 TSKSQ9UJT2 592 aa4.81□□□□□ -1.64
VPS35-209ENST00000568642 LTBP4Q8N2S1 1624 aa4.8□□□□□ -1.64
VPS35-209ENST00000568642 SMAPO00193 183 aa4.8□□□□□ -1.64
VPS35-209ENST00000568642 PHF14O94880 888 aa4.8□□□□□ -1.64
VPS35-209ENST00000568642 IRF5Q13568 498 aa4.8□□□□□ -1.64
VPS35-209ENST00000568642 LIAT1Q6ZQX7 453 aa4.8□□□□□ -1.64
VPS35-209ENST00000568642 ARHGEF1Q92888 912 aaKnown RBP4.8□□□□□ -1.64
VPS35-209ENST00000568642 MFAP1P55081 439 aaKnown RBP4.79□□□□□ -1.64
VPS35-209ENST00000568642 MAP3K9P80192 1104 aa4.79□□□□□ -1.64
VPS35-209ENST00000568642 CRIPAKQ8N1N5 446 aa4.79□□□□□ -1.64
VPS35-209ENST00000568642 CLUAP1Q96AJ1 413 aa4.79□□□□□ -1.64
VPS35-209ENST00000568642 EMILIN3Q9NT22 766 aa4.79□□□□□ -1.64
VPS35-209ENST00000568642 SETD1AO15047 1707 aaKnown RBP4.79□□□□□ -1.64
VPS35-209ENST00000568642 PTPRMP28827 1452 aa4.78□□□□□ -1.64
VPS35-209ENST00000568642 C3orf80F5H4A9 247 aa4.78□□□□□ -1.64
VPS35-209ENST00000568642 TERTO14746 1132 aaKnown RBP4.78□□□□□ -1.64
VPS35-209ENST00000568642 PPEF1O14829 653 aaPredicted RBP4.78□□□□□ -1.64
VPS35-209ENST00000568642 FAM117AQ9C073 453 aa4.78□□□□□ -1.64
VPS35-209ENST00000568642 FAM181BA6NEQ2 426 aa4.77□□□□□ -1.65
VPS35-209ENST00000568642 TRIM66O15016 1216 aa4.77□□□□□ -1.65
VPS35-209ENST00000568642 FNBP4Q8N3X1 1017 aaPredicted RBP4.77□□□□□ -1.65
VPS35-209ENST00000568642 AK7Q96M32 723 aa4.77□□□□□ -1.65
VPS35-209ENST00000568642 IGSF5Q9NSI5 407 aa4.77□□□□□ -1.65
VPS35-209ENST00000568642 MAPKBP1O60336 1514 aa4.77□□□□□ -1.65
VPS35-209ENST00000568642 PPRC1Q5VV67 1664 aaKnown RBP4.77□□□□□ -1.65
VPS35-209ENST00000568642 KIF21BO75037 1637 aa4.76□□□□□ -1.65
VPS35-209ENST00000568642 RNF40O75150 1001 aa4.76□□□□□ -1.65
VPS35-209ENST00000568642 ZPR1O75312 459 aa4.76□□□□□ -1.65
VPS35-209ENST00000568642 HSP90B1P14625 803 aaKnown RBP4.76□□□□□ -1.65
VPS35-209ENST00000568642 HSPA2P54652 639 aa4.76□□□□□ -1.65
VPS35-209ENST00000568642 PACS2Q86VP3 889 aa4.76□□□□□ -1.65
VPS35-209ENST00000568642 IQSEC2Q5JU85 1478 aa4.75□□□□□ -1.65
VPS35-209ENST00000568642 SNRPBP14678 240 aaKnown RBP4.75□□□□□ -1.65
VPS35-209ENST00000568642 PDE4DQ08499 809 aa4.75□□□□□ -1.65
VPS35-209ENST00000568642 RBM33Q96EV2 1170 aaKnown RBP4.75□□□□□ -1.65
VPS35-209ENST00000568642 GZF1Q9H116 711 aaPredicted RBP4.75□□□□□ -1.65
VPS35-209ENST00000568642 AQRO60306 1485 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS35-209ENST00000568642 AXIN1O15169 862 aa4.74□□□□□ -1.65
VPS35-209ENST00000568642 AVPP01185 164 aa4.74□□□□□ -1.65
VPS35-209ENST00000568642 RBM25P49756 843 aaKnown RBP4.74□□□□□ -1.65
VPS35-209ENST00000568642 ZSCAN1Q8NBB4 408 aa4.74□□□□□ -1.65
VPS35-209ENST00000568642 PKD2L1Q9P0L9 805 aa4.74□□□□□ -1.65
VPS35-209ENST00000568642 FAM198AQ9UFP1 575 aa4.74□□□□□ -1.65
VPS35-209ENST00000568642 DCAF1Q9Y4B6 1507 aa4.73□□□□□ -1.65
VPS35-209ENST00000568642 TLL1O43897 1013 aa4.73□□□□□ -1.65
VPS35-209ENST00000568642 CDK11BP21127 795 aaKnown RBP4.73□□□□□ -1.65
VPS35-209ENST00000568642 TMCO4Q5TGY1 634 aa4.73□□□□□ -1.65
VPS35-209ENST00000568642 ANKLE1Q8NAG6 615 aa4.73□□□□□ -1.65
VPS35-209ENST00000568642 RETREG2Q8NC44 543 aa4.73□□□□□ -1.65
VPS35-209ENST00000568642 CDK11AQ9UQ88 783 aaPredicted RBP4.73□□□□□ -1.65
VPS35-209ENST00000568642 ADAMTSL3P82987 1691 aa4.73□□□□□ -1.65
VPS35-209ENST00000568642 FLIIQ13045 1269 aa4.72□□□□□ -1.65
VPS35-209ENST00000568642 TSR1Q2NL82 804 aaKnown RBP4.72□□□□□ -1.65
VPS35-209ENST00000568642 PLA2G2CQ5R387 149 aa4.72□□□□□ -1.65
VPS35-209ENST00000568642 AEBP1Q8IUX7 1158 aa4.72□□□□□ -1.65
VPS35-209ENST00000568642 EPAS1Q99814 870 aa4.72□□□□□ -1.65
VPS35-209ENST00000568642 KRTAP4-8Q9BYQ9 185 aa4.72□□□□□ -1.65
VPS35-209ENST00000568642 WDR70Q9NW82 654 aa4.72□□□□□ -1.65
VPS35-209ENST00000568642 STRCQ7RTU9 1775 aa4.71□□□□□ -1.66
VPS35-209ENST00000568642 COL17A1Q9UMD9 1497 aaPredicted RBP4.71□□□□□ -1.66
VPS35-209ENST00000568642 GPR37O15354 613 aa4.71□□□□□ -1.66
VPS35-209ENST00000568642 S1PR4O95977 384 aa4.71□□□□□ -1.66
VPS35-209ENST00000568642 GMPRP36959 345 aa4.71□□□□□ -1.66
VPS35-209ENST00000568642 FOXC1Q12948 553 aa4.71□□□□□ -1.66
VPS35-209ENST00000568642 ARIH1Q9Y4X5 557 aaPredicted RBP4.71□□□□□ -1.66
VPS35-209ENST00000568642 PDE4AP27815 886 aa4.7□□□□□ -1.66
VPS35-209ENST00000568642 GSK3AP49840 483 aa4.7□□□□□ -1.66
VPS35-209ENST00000568642 XP32Q5T750 250 aa4.7□□□□□ -1.66
VPS35-209ENST00000568642 CHMP7Q8WUX9 453 aaPredicted RBP4.7□□□□□ -1.66
VPS35-209ENST00000568642 TATDN2Q93075 761 aa4.7□□□□□ -1.66
VPS35-209ENST00000568642 CFAP43Q8NDM7 1665 aa4.7□□□□□ -1.66
VPS35-209ENST00000568642 UNCXA6NJT0 531 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 UBAP1LF5GYI3 381 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 SMCPP49901 116 aaPredicted RBP4.69□□□□□ -1.66
VPS35-209ENST00000568642 E2F4Q16254 413 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 RBM26Q5T8P6 1007 aaKnown RBP4.69□□□□□ -1.66
VPS35-209ENST00000568642 BLOC1S3Q6QNY0 202 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 DHX37Q8IY37 1157 aaKnown RBP4.69□□□□□ -1.66
VPS35-209ENST00000568642 FAM177A1Q8N128 213 aaPredicted RBP4.69□□□□□ -1.66
VPS35-209ENST00000568642 CDCA7LQ96GN5 454 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 DDX27Q96GQ7 796 aaKnown RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms