RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 FAM117AQ9C073 453 aa5.77□□□□□ -1.49
VPS35-208ENST00000568612 PRDM9Q9NQV7 894 aa5.77□□□□□ -1.49
VPS35-208ENST00000568612 RNF223E7ERA6 249 aa5.76□□□□□ -1.49
VPS35-208ENST00000568612 RSBN1LQ6PCB5 846 aaPredicted RBP5.76□□□□□ -1.49
VPS35-208ENST00000568612 RIC3Q7Z5B4 369 aa5.76□□□□□ -1.49
VPS35-208ENST00000568612 DDRGK1Q96HY6 314 aa5.76□□□□□ -1.49
VPS35-208ENST00000568612 POLR3EQ9NVU0 708 aa5.76□□□□□ -1.49
VPS35-208ENST00000568612 PCDHGC3Q9UN70 934 aa5.76□□□□□ -1.49
VPS35-208ENST00000568612 SALL2Q9Y467 1007 aaPredicted RBP5.76□□□□□ -1.49
VPS35-208ENST00000568612 TTBK1Q5TCY1 1321 aaPredicted RBP5.75□□□□□ -1.49
VPS35-208ENST00000568612 BRPF1P55201 1214 aaPredicted RBP5.75□□□□□ -1.49
VPS35-208ENST00000568612 MYSM1Q5VVJ2 828 aa5.75□□□□□ -1.49
VPS35-208ENST00000568612 FAM160A2Q8N612 972 aaPredicted RBP5.75□□□□□ -1.49
VPS35-208ENST00000568612 PRKD2Q9BZL6 878 aa5.75□□□□□ -1.49
VPS35-208ENST00000568612 RSPH6AQ9H0K4 717 aa5.75□□□□□ -1.49
VPS35-208ENST00000568612 NUTM2BA6NNL0 878 aaPredicted RBP5.74□□□□□ -1.49
VPS35-208ENST00000568612 NUTM2EB1AL46 878 aaPredicted RBP5.74□□□□□ -1.49
VPS35-208ENST00000568612 CLK2P49760 499 aaKnown RBP5.74□□□□□ -1.49
VPS35-208ENST00000568612 MTMR2Q13614 643 aa5.74□□□□□ -1.49
VPS35-208ENST00000568612 MSS51Q4VC12 460 aa5.74□□□□□ -1.49
VPS35-208ENST00000568612 NUTM2DQ5VT03 806 aaPredicted RBP5.74□□□□□ -1.49
VPS35-208ENST00000568612 NUTM2AQ8IVF1 878 aaPredicted RBP5.74□□□□□ -1.49
VPS35-208ENST00000568612 CCDC24Q8N4L8 307 aa5.74□□□□□ -1.49
VPS35-208ENST00000568612 IL27Q8NEV9 243 aa5.74□□□□□ -1.49
VPS35-208ENST00000568612 TSC1Q92574 1164 aa5.74□□□□□ -1.49
VPS35-208ENST00000568612 FCF1Q9Y324 198 aaKnown RBP5.74□□□□□ -1.49
VPS35-208ENST00000568612 PCDHB15Q9Y5E8 787 aa5.74□□□□□ -1.49
VPS35-208ENST00000568612 SPTLC1O15269 473 aa5.73□□□□□ -1.49
VPS35-208ENST00000568612 RGS20O76081 388 aa5.73□□□□□ -1.49
VPS35-208ENST00000568612 RETREG3Q86VR2 466 aa5.73□□□□□ -1.49
VPS35-208ENST00000568612 ANKLE1Q8NAG6 615 aa5.73□□□□□ -1.49
VPS35-208ENST00000568612 CABLES1Q8TDN4 633 aa5.73□□□□□ -1.49
VPS35-208ENST00000568612 LIMD1Q9UGP4 676 aa5.73□□□□□ -1.49
VPS35-208ENST00000568612 PRR7Q8TB68 274 aa5.72□□□□□ -1.49
VPS35-208ENST00000568612 ZBTB3Q9H5J0 574 aa5.72□□□□□ -1.49
VPS35-208ENST00000568612 PLEKHG3A1L390 1219 aa5.71□□□□□ -1.5
VPS35-208ENST00000568612 JUNDP17535 347 aa5.71□□□□□ -1.5
VPS35-208ENST00000568612 HRCP23327 699 aa5.71□□□□□ -1.5
VPS35-208ENST00000568612 SLC19A1P41440 591 aa5.71□□□□□ -1.5
VPS35-208ENST00000568612 SPDYE5A6NIY4 337 aa5.7□□□□□ -1.5
VPS35-208ENST00000568612 ZBTB24O43167 697 aaPredicted RBP5.7□□□□□ -1.5
VPS35-208ENST00000568612 GJA5P36382 358 aa5.7□□□□□ -1.5
VPS35-208ENST00000568612 SKIV2LQ15477 1246 aaKnown RBP5.7□□□□□ -1.5
VPS35-208ENST00000568612 QPCTQ16769 361 aa5.7□□□□□ -1.5
VPS35-208ENST00000568612 SH3D19Q5HYK7 790 aa5.7□□□□□ -1.5
VPS35-208ENST00000568612 PLA2G2CQ5R387 149 aa5.7□□□□□ -1.5
VPS35-208ENST00000568612 DXOO77932 396 aaKnown RBP5.69□□□□□ -1.5
VPS35-208ENST00000568612 MMP16P51512 607 aa5.69□□□□□ -1.5
VPS35-208ENST00000568612 PRPF38BQ5VTL8 546 aaKnown RBP5.69□□□□□ -1.5
VPS35-208ENST00000568612 LIAT1Q6ZQX7 453 aa5.69□□□□□ -1.5
VPS35-208ENST00000568612 PROCA1Q8NCQ7 364 aaPredicted RBP5.69□□□□□ -1.5
VPS35-208ENST00000568612 NUDT12Q9BQG2 462 aa5.69□□□□□ -1.5
VPS35-208ENST00000568612 V9GY48 417 aaPredicted RBP5.69□□□□□ -1.5
VPS35-208ENST00000568612 CFAP99D6REC4 459 aa5.68□□□□□ -1.5
VPS35-208ENST00000568612 PCMTD1Q96MG8 357 aaPredicted RBP5.68□□□□□ -1.5
VPS35-208ENST00000568612 LILRB3O75022 631 aa5.67□□□□□ -1.5
VPS35-208ENST00000568612 CTHP32929 405 aa5.67□□□□□ -1.5
VPS35-208ENST00000568612 RTL5Q5HYW3 569 aaPredicted RBP5.67□□□□□ -1.5
VPS35-208ENST00000568612 ZNF697Q5TEC3 545 aa5.67□□□□□ -1.5
VPS35-208ENST00000568612 HELBQ8NG08 1087 aaPredicted RBP5.67□□□□□ -1.5
VPS35-208ENST00000568612 IRX2Q9BZI1 471 aaPredicted RBP5.67□□□□□ -1.5
VPS35-208ENST00000568612 CD2BP2O95400 341 aaKnown RBP5.66□□□□□ -1.5
VPS35-208ENST00000568612 CCNYL3P0C7X3 344 aa5.66□□□□□ -1.5
VPS35-208ENST00000568612 TUSC1Q2TAM9 212 aa5.66□□□□□ -1.5
VPS35-208ENST00000568612 SPRYD7Q5W111 196 aa5.66□□□□□ -1.5
VPS35-208ENST00000568612 EMID1Q96A84 441 aaPredicted RBP5.66□□□□□ -1.5
VPS35-208ENST00000568612 RPIAP49247 311 aa5.65□□□□□ -1.5
VPS35-208ENST00000568612 FOXC1Q12948 553 aa5.65□□□□□ -1.5
VPS35-208ENST00000568612 PTPRNQ16849 979 aa5.65□□□□□ -1.5
VPS35-208ENST00000568612 ZNF598Q86UK7 904 aaKnown RBP5.65□□□□□ -1.5
VPS35-208ENST00000568612 TNFRSF10AO00220 468 aa5.64□□□□□ -1.51
VPS35-208ENST00000568612 GFRA3O60609 400 aa5.64□□□□□ -1.51
VPS35-208ENST00000568612 TRIM32Q13049 653 aa5.64□□□□□ -1.51
VPS35-208ENST00000568612 DESI1Q6ICB0 168 aa5.64□□□□□ -1.51
VPS35-208ENST00000568612 PDZRN3Q9UPQ7 1066 aa5.64□□□□□ -1.51
VPS35-208ENST00000568612 AP1G2O75843 785 aa5.63□□□□□ -1.51
VPS35-208ENST00000568612 KCNH2Q12809 1159 aa5.63□□□□□ -1.51
VPS35-208ENST00000568612 PTCRAQ6ISU1 281 aaPredicted RBP5.63□□□□□ -1.51
VPS35-208ENST00000568612 LYPD8Q6UX82 237 aa5.63□□□□□ -1.51
VPS35-208ENST00000568612 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS35-208ENST00000568612 UNC93B1Q9H1C4 597 aa5.63□□□□□ -1.51
VPS35-208ENST00000568612 PER1O15534 1290 aaPredicted RBP5.62□□□□□ -1.51
VPS35-208ENST00000568612 CTDSPL2Q05D32 466 aa5.62□□□□□ -1.51
VPS35-208ENST00000568612 LINC01559Q495D7 138 aa5.62□□□□□ -1.51
VPS35-208ENST00000568612 FBXO31Q5XUX0 539 aaPredicted RBP5.62□□□□□ -1.51
VPS35-208ENST00000568612 GOPCQ9HD26 462 aa5.62□□□□□ -1.51
VPS35-208ENST00000568612 EVA1BQ9NVM1 165 aa5.62□□□□□ -1.51
VPS35-208ENST00000568612 MAP10Q9P2G4 905 aa5.62□□□□□ -1.51
VPS35-208ENST00000568612 RFC5P40937 340 aa5.61□□□□□ -1.51
VPS35-208ENST00000568612 PPP2R2DQ66LE6 453 aa5.6□□□□□ -1.51
VPS35-208ENST00000568612 Q6ZNB5 142 aa5.6□□□□□ -1.51
VPS35-208ENST00000568612 BAP1Q92560 729 aa5.6□□□□□ -1.51
VPS35-208ENST00000568612 LAPTM4AQ15012 233 aa5.59□□□□□ -1.51
VPS35-208ENST00000568612 AGERQ15109 404 aa5.59□□□□□ -1.51
VPS35-208ENST00000568612 LRRN4Q8WUT4 740 aa5.59□□□□□ -1.51
VPS35-208ENST00000568612 TTC24A2A3L6 582 aaPredicted RBP5.58□□□□□ -1.52
VPS35-208ENST00000568612 NRG2O14511 850 aaPredicted RBP5.58□□□□□ -1.52
VPS35-208ENST00000568612 GDF9O60383 454 aa5.58□□□□□ -1.52
VPS35-208ENST00000568612 F12P00748 615 aaPredicted RBP5.58□□□□□ -1.52
VPS35-208ENST00000568612 USP17L8P0C7I0 530 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms