RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 GPRASP1Q5JY77 1395 aa31.28■■■□□ 2.6
CLN3-234ENST00000568472 PLEKHH1Q9ULM0 1364 aa31.27■■■□□ 2.6
CLN3-234ENST00000568472 RALGAPBQ86X10 1494 aa31.25■■■□□ 2.59
CLN3-234ENST00000568472 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.24■■■□□ 2.59
CLN3-234ENST00000568472 PIP4K2BP78356 416 aa31.24■■■□□ 2.59
CLN3-234ENST00000568472 CARD11Q9BXL7 1154 aa31.22■■■□□ 2.59
CLN3-234ENST00000568472 SCAF1Q9H7N4 1312 aaKnown RBP31.22■■■□□ 2.59
CLN3-234ENST00000568472 SAFB2Q14151 953 aaKnown RBP eCLIP31.2■■■□□ 2.59
CLN3-234ENST00000568472 ILDR1Q86SU0 546 aaPredicted RBP31.2■■■□□ 2.59
CLN3-234ENST00000568472 NALCNQ8IZF0 1738 aa31.19■■■□□ 2.58
CLN3-234ENST00000568472 EIF3AQ14152 1382 aaKnown RBP31.18■■■□□ 2.58
CLN3-234ENST00000568472 CDC42BPGQ6DT37 1551 aa31.17■■■□□ 2.58
CLN3-234ENST00000568472 CENPJQ9HC77 1338 aaPredicted RBP31.16■■■□□ 2.58
CLN3-234ENST00000568472 MST1RQ04912 1400 aa31.15■■■□□ 2.58
CLN3-234ENST00000568472 ARHGEF28Q8N1W1 1705 aaKnown RBP31.14■■■□□ 2.58
CLN3-234ENST00000568472 MINK1Q8N4C8 1332 aaPredicted RBP31.12■■■□□ 2.57
CLN3-234ENST00000568472 C1orf167Q5SNV9 1468 aa31.09■■■□□ 2.57
CLN3-234ENST00000568472 ADGRB2O60241 1585 aa31.09■■■□□ 2.57
CLN3-234ENST00000568472 WASLO00401 505 aaPredicted RBP31.08■■■□□ 2.57
CLN3-234ENST00000568472 HIRIP3Q9BW71 556 aaPredicted RBP31.07■■■□□ 2.56
CLN3-234ENST00000568472 BRINP3Q76B58 766 aa31.06■■■□□ 2.56
CLN3-234ENST00000568472 SLC24A1O60721 1099 aa31.05■■■□□ 2.56
CLN3-234ENST00000568472 ANKARQ7Z5J8 1434 aa31.02■■■□□ 2.56
CLN3-234ENST00000568472 ROBO1Q9Y6N7 1651 aa31.02■■■□□ 2.56
CLN3-234ENST00000568472 ESCO1Q5FWF5 840 aa31.01■■■□□ 2.55
CLN3-234ENST00000568472 SBNO2Q9Y2G9 1366 aa31■■■□□ 2.55
CLN3-234ENST00000568472 FMN2Q9NZ56 1722 aa30.99■■■□□ 2.55
CLN3-234ENST00000568472 NUTM2FA1L443 756 aa30.99■■■□□ 2.55
CLN3-234ENST00000568472 HSPA1LP34931 641 aa30.99■■■□□ 2.55
CLN3-234ENST00000568472 ORAI2Q96SN7 254 aa30.99■■■□□ 2.55
CLN3-234ENST00000568472 CDK19Q9BWU1 502 aa30.99■■■□□ 2.55
CLN3-234ENST00000568472 EVC2Q86UK5 1308 aa30.98■■■□□ 2.55
CLN3-234ENST00000568472 USP47Q96K76 1375 aa30.95■■■□□ 2.55
CLN3-234ENST00000568472 TULP4Q9NRJ4 1543 aa30.95■■■□□ 2.55
CLN3-234ENST00000568472 QRICH2Q9H0J4 1663 aa30.94■■■□□ 2.54
CLN3-234ENST00000568472 ST20-MTHFSA0A0A6YYL1 179 aa30.94■■■□□ 2.54
CLN3-234ENST00000568472 SRPK2P78362 688 aaKnown RBP30.92■■■□□ 2.54
CLN3-234ENST00000568472 NUDT16Q96DE0 195 aaKnown RBP30.92■■■□□ 2.54
CLN3-234ENST00000568472 PHF8Q9UPP1 1060 aa30.92■■■□□ 2.54
CLN3-234ENST00000568472 NPHP3Q7Z494 1330 aa30.91■■■□□ 2.54
CLN3-234ENST00000568472 CCDC61Q9Y6R9 512 aa30.9■■■□□ 2.54
CLN3-234ENST00000568472 AHDC1Q5TGY3 1603 aaPredicted RBP30.9■■■□□ 2.54
CLN3-234ENST00000568472 PRR36Q9H6K5 1346 aa30.89■■■□□ 2.54
CLN3-234ENST00000568472 EIF4G2P78344 907 aaKnown RBP eCLIP30.86■■■□□ 2.53
CLN3-234ENST00000568472 PUS7Q96PZ0 661 aaKnown RBP30.86■■■□□ 2.53
CLN3-234ENST00000568472 TESK2Q96S53 571 aa30.86■■■□□ 2.53
CLN3-234ENST00000568472 FOXO3O43524 673 aa30.85■■■□□ 2.53
CLN3-234ENST00000568472 CABP2Q9NPB3 220 aa30.85■■■□□ 2.53
CLN3-234ENST00000568472 ATP7BP35670 1465 aa30.84■■■□□ 2.53
CLN3-234ENST00000568472 LRRC59Q96AG4 307 aaKnown RBP30.84■■■□□ 2.53
CLN3-234ENST00000568472 KIF1AQ12756 1690 aa30.84■■■□□ 2.53
CLN3-234ENST00000568472 SOS2Q07890 1332 aaPredicted RBP30.83■■■□□ 2.53
CLN3-234ENST00000568472 USP32Q8NFA0 1604 aa30.83■■■□□ 2.53
CLN3-234ENST00000568472 PHLPP1O60346 1717 aa30.81■■■□□ 2.52
CLN3-234ENST00000568472 NHSL1Q5SYE7 1610 aa30.81■■■□□ 2.52
CLN3-234ENST00000568472 PLEKHG3A1L390 1219 aa30.81■■■□□ 2.52
CLN3-234ENST00000568472 ATAD2Q6PL18 1390 aa30.8■■■□□ 2.52
CLN3-234ENST00000568472 TMF1P82094 1093 aa30.8■■■□□ 2.52
CLN3-234ENST00000568472 PSME1Q06323 249 aa30.8■■■□□ 2.52
CLN3-234ENST00000568472 PMFBP1Q8TBY8 1022 aa30.8■■■□□ 2.52
CLN3-234ENST00000568472 DDX17Q92841 729 aaKnown RBP30.8■■■□□ 2.52
CLN3-234ENST00000568472 NGDNQ8NEJ9 315 aaKnown RBP30.79■■■□□ 2.52
CLN3-234ENST00000568472 CDCA8Q53HL2 280 aa30.78■■■□□ 2.52
CLN3-234ENST00000568472 JCADQ9P266 1359 aa30.78■■■□□ 2.52
CLN3-234ENST00000568472 KRT28Q7Z3Y7 464 aa30.77■■■□□ 2.52
CLN3-234ENST00000568472 COL16A1Q07092 1604 aaPredicted RBP30.76■■■□□ 2.52
CLN3-234ENST00000568472 ITSN1Q15811 1721 aa30.76■■■□□ 2.51
CLN3-234ENST00000568472 RGPD8O14715 1765 aaPredicted RBP30.75■■■□□ 2.51
CLN3-234ENST00000568472 PPIP5K1Q6PFW1 1433 aa30.74■■■□□ 2.51
CLN3-234ENST00000568472 HSPA5P11021 654 aaKnown RBP30.73■■■□□ 2.51
CLN3-234ENST00000568472 CABP1Q9NZU7 370 aa30.73■■■□□ 2.51
CLN3-234ENST00000568472 POLR3AO14802 1390 aaPredicted RBP30.73■■■□□ 2.51
CLN3-234ENST00000568472 PXDNQ92626 1479 aa30.73■■■□□ 2.51
CLN3-234ENST00000568472 ZEB1P37275 1124 aaPredicted RBP30.72■■■□□ 2.51
CLN3-234ENST00000568472 ACEP12821 1306 aa30.72■■■□□ 2.51
CLN3-234ENST00000568472 SBNO1A3KN83 1393 aa30.7■■■□□ 2.51
CLN3-234ENST00000568472 XPCQ01831 940 aaPredicted RBP30.7■■■□□ 2.51
CLN3-234ENST00000568472 TOPAZ1Q8N9V7 1692 aa30.69■■■□□ 2.5
CLN3-234ENST00000568472 ZNF692Q9BU19 519 aaPredicted RBP30.68■■■□□ 2.5
CLN3-234ENST00000568472 SPATA31A6Q5VVP1 1343 aa30.68■■■□□ 2.5
CLN3-234ENST00000568472 SPATA31A3Q5VYP0 1347 aa30.67■■■□□ 2.5
CLN3-234ENST00000568472 BRD4O60885 1362 aaPredicted RBP30.66■■■□□ 2.5
CLN3-234ENST00000568472 NINLQ9Y2I6 1382 aa30.66■■■□□ 2.5
CLN3-234ENST00000568472 DISP3Q9P2K9 1392 aa30.65■■■□□ 2.5
CLN3-234ENST00000568472 TMC1Q8TDI8 760 aa30.63■■■□□ 2.49
CLN3-234ENST00000568472 PNPLA6Q8IY17 1366 aa30.63■■■□□ 2.49
CLN3-234ENST00000568472 ARHGEF10O15013 1369 aa30.62■■■□□ 2.49
CLN3-234ENST00000568472 TNS3Q68CZ2 1445 aa30.61■■■□□ 2.49
CLN3-234ENST00000568472 SHPRHQ149N8 1683 aa30.6■■■□□ 2.49
CLN3-234ENST00000568472 TERF2IPQ9NYB0 399 aa30.6■■■□□ 2.49
CLN3-234ENST00000568472 PAK3O75914 559 aaPredicted RBP30.58■■■□□ 2.49
CLN3-234ENST00000568472 HDGFL2Q7Z4V5 671 aaPredicted RBP30.58■■■□□ 2.49
CLN3-234ENST00000568472 SLC12A5Q9H2X9 1139 aa30.58■■■□□ 2.49
CLN3-234ENST00000568472 CPSF1Q10570 1443 aaKnown RBP30.57■■■□□ 2.48
CLN3-234ENST00000568472 USP6P35125 1406 aa30.56■■■□□ 2.48
CLN3-234ENST00000568472 LMOD2Q6P5Q4 547 aa30.55■■■□□ 2.48
CLN3-234ENST00000568472 KTN1Q86UP2 1357 aaKnown RBP30.53■■■□□ 2.48
CLN3-234ENST00000568472 TRPM3Q9HCF6 1732 aaPredicted RBP30.51■■■□□ 2.47
CLN3-234ENST00000568472 COL22A1Q8NFW1 1626 aaPredicted RBP30.5■■■□□ 2.47
CLN3-234ENST00000568472 SSH2Q76I76 1423 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms