RNA–Protein interactions for RNA: ENST00000568108.1

PTPN9-205, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 2

Gene PTPN9, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-205ENST00000568108 CLTCL1P53675 1640 aa9.54□□□□□ -0.88
PTPN9-205ENST00000568108 USP21Q9UK80 565 aa9.54□□□□□ -0.88
PTPN9-205ENST00000568108 RPGRIP1LQ68CZ1 1315 aa9.54□□□□□ -0.88
PTPN9-205ENST00000568108 PCGF6Q9BYE7 350 aa9.53□□□□□ -0.88
PTPN9-205ENST00000568108 TRPC5Q9UL62 973 aaPredicted RBP9.53□□□□□ -0.88
PTPN9-205ENST00000568108 RGS12O14924 1447 aa9.53□□□□□ -0.88
PTPN9-205ENST00000568108 NAIPQ13075 1403 aa9.52□□□□□ -0.89
PTPN9-205ENST00000568108 PTCH1Q13635 1447 aa9.52□□□□□ -0.89
PTPN9-205ENST00000568108 ESCO1Q5FWF5 840 aa9.52□□□□□ -0.89
PTPN9-205ENST00000568108 NALCNQ8IZF0 1738 aa9.52□□□□□ -0.89
PTPN9-205ENST00000568108 KIF1BO60333 1816 aa9.52□□□□□ -0.89
PTPN9-205ENST00000568108 FNBP4Q8N3X1 1017 aaPredicted RBP9.51□□□□□ -0.89
PTPN9-205ENST00000568108 HFM1A2PYH4 1435 aa9.5□□□□□ -0.89
PTPN9-205ENST00000568108 RRBP1Q9P2E9 1410 aaKnown RBP9.5□□□□□ -0.89
PTPN9-205ENST00000568108 FOXO3O43524 673 aa9.5□□□□□ -0.89
PTPN9-205ENST00000568108 NPHP3Q7Z494 1330 aa9.5□□□□□ -0.89
PTPN9-205ENST00000568108 ATAD2Q6PL18 1390 aa9.5□□□□□ -0.89
PTPN9-205ENST00000568108 XPCQ01831 940 aaPredicted RBP9.49□□□□□ -0.89
PTPN9-205ENST00000568108 STK26Q9P289 416 aa9.49□□□□□ -0.89
PTPN9-205ENST00000568108 NUTM2FA1L443 756 aa9.48□□□□□ -0.89
PTPN9-205ENST00000568108 HRCP23327 699 aa9.48□□□□□ -0.89
PTPN9-205ENST00000568108 RGL3Q3MIN7 710 aa9.48□□□□□ -0.89
PTPN9-205ENST00000568108 WAPLQ7Z5K2 1190 aa9.48□□□□□ -0.89
PTPN9-205ENST00000568108 ADGRF5Q8IZF2 1346 aa9.48□□□□□ -0.89
PTPN9-205ENST00000568108 LAMC1P11047 1609 aa9.48□□□□□ -0.89
PTPN9-205ENST00000568108 PRAG1Q86YV5 1406 aa9.48□□□□□ -0.89
PTPN9-205ENST00000568108 LRPPRCP42704 1394 aaKnown RBP9.47□□□□□ -0.89
PTPN9-205ENST00000568108 ATRNO75882 1429 aa9.47□□□□□ -0.89
PTPN9-205ENST00000568108 TMEM132EQ6IEE7 984 aa9.46□□□□□ -0.9
PTPN9-205ENST00000568108 CCDC125Q86Z20 511 aa9.46□□□□□ -0.9
PTPN9-205ENST00000568108 GJD4Q96KN9 370 aaPredicted RBP9.46□□□□□ -0.9
PTPN9-205ENST00000568108 ZRANB1Q9UGI0 708 aa9.46□□□□□ -0.9
PTPN9-205ENST00000568108 MYOM2P54296 1465 aa9.45□□□□□ -0.9
PTPN9-205ENST00000568108 BCL9LQ86UU0 1499 aa9.45□□□□□ -0.9
PTPN9-205ENST00000568108 SLC4A2P04920 1241 aa9.44□□□□□ -0.9
PTPN9-205ENST00000568108 MPHOSPH9Q99550 1183 aa9.44□□□□□ -0.9
PTPN9-205ENST00000568108 ABCC11Q96J66 1382 aa9.44□□□□□ -0.9
PTPN9-205ENST00000568108 ANKRD30BQ9BXX2 1392 aa9.44□□□□□ -0.9
PTPN9-205ENST00000568108 CCDC144AA2RUR9 1427 aa9.44□□□□□ -0.9
PTPN9-205ENST00000568108 PXDNQ92626 1479 aa9.44□□□□□ -0.9
PTPN9-205ENST00000568108 PPLO60437 1756 aa9.44□□□□□ -0.9
PTPN9-205ENST00000568108 COL22A1Q8NFW1 1626 aaPredicted RBP9.43□□□□□ -0.9
PTPN9-205ENST00000568108 CDC42BPGQ6DT37 1551 aa9.43□□□□□ -0.9
PTPN9-205ENST00000568108 SPATA31A3Q5VYP0 1347 aa9.43□□□□□ -0.9
PTPN9-205ENST00000568108 ATXN8OSP0DMR3 200 aa9.43□□□□□ -0.9
PTPN9-205ENST00000568108 KRT28Q7Z3Y7 464 aa9.43□□□□□ -0.9
PTPN9-205ENST00000568108 UNC5CLQ8IV45 518 aa9.43□□□□□ -0.9
PTPN9-205ENST00000568108 PLEKHH1Q9ULM0 1364 aa9.42□□□□□ -0.9
PTPN9-205ENST00000568108 SIRT1Q96EB6 747 aa9.42□□□□□ -0.9
PTPN9-205ENST00000568108 TECPR2O15040 1411 aa9.41□□□□□ -0.9
PTPN9-205ENST00000568108 SPATA31E1Q6ZUB1 1445 aa9.41□□□□□ -0.9
PTPN9-205ENST00000568108 HAP1P54257 671 aaPredicted RBP9.41□□□□□ -0.9
PTPN9-205ENST00000568108 PSME1Q06323 249 aa9.41□□□□□ -0.9
PTPN9-205ENST00000568108 C14orf93Q9H972 538 aaKnown RBP9.41□□□□□ -0.9
PTPN9-205ENST00000568108 YTHDC2Q9H6S0 1430 aaKnown RBP9.4□□□□□ -0.9
PTPN9-205ENST00000568108 PLEKHG5O94827 1062 aa9.4□□□□□ -0.9
PTPN9-205ENST00000568108 CABLES1Q8TDN4 633 aa9.4□□□□□ -0.9
PTPN9-205ENST00000568108 PHF8Q9UPP1 1060 aa9.4□□□□□ -0.9
PTPN9-205ENST00000568108 ZEB1P37275 1124 aaPredicted RBP9.39□□□□□ -0.91
PTPN9-205ENST00000568108 CFAP70Q5T0N1 1121 aa9.39□□□□□ -0.91
PTPN9-205ENST00000568108 LMOD2Q6P5Q4 547 aa9.39□□□□□ -0.91
PTPN9-205ENST00000568108 SEPT12Q8IYM1 358 aa9.39□□□□□ -0.91
PTPN9-205ENST00000568108 CCDC9Q9Y3X0 531 aaKnown RBP9.39□□□□□ -0.91
PTPN9-205ENST00000568108 SLIT2O94813 1529 aa9.39□□□□□ -0.91
PTPN9-205ENST00000568108 RALGAPBQ86X10 1494 aa9.39□□□□□ -0.91
PTPN9-205ENST00000568108 PIK3C2GO75747 1445 aa9.39□□□□□ -0.91
PTPN9-205ENST00000568108 DHX57Q6P158 1386 aaKnown RBP9.38□□□□□ -0.91
PTPN9-205ENST00000568108 MYCNP04198 464 aaPredicted RBP9.38□□□□□ -0.91
PTPN9-205ENST00000568108 SF3B2Q13435 895 aaKnown RBP9.38□□□□□ -0.91
PTPN9-205ENST00000568108 SAFB2Q14151 953 aaKnown RBP eCLIP9.38□□□□□ -0.91
PTPN9-205ENST00000568108 VPS72Q15906 364 aa9.38□□□□□ -0.91
PTPN9-205ENST00000568108 MARF1Q9Y4F3 1742 aaKnown RBP9.38□□□□□ -0.91
PTPN9-205ENST00000568108 BLMP54132 1417 aaPredicted RBP9.38□□□□□ -0.91
PTPN9-205ENST00000568108 DEFB132Q7Z7B7 95 aa9.37□□□□□ -0.91
PTPN9-205ENST00000568108 PRAM1Q96QH2 718 aa9.37□□□□□ -0.91
PTPN9-205ENST00000568108 POGKQ9P215 609 aa9.37□□□□□ -0.91
PTPN9-205ENST00000568108 SRCAPQ6ZRS2 3230 aa9.37□□□□□ -0.91
PTPN9-205ENST00000568108 FAM83GA6ND36 823 aa9.36□□□□□ -0.91
PTPN9-205ENST00000568108 ONECUT3O60422 494 aaPredicted RBP9.36□□□□□ -0.91
PTPN9-205ENST00000568108 PMFBP1Q8TBY8 1022 aa9.36□□□□□ -0.91
PTPN9-205ENST00000568108 GLI3P10071 1580 aa9.36□□□□□ -0.91
PTPN9-205ENST00000568108 FMN2Q9NZ56 1722 aa9.36□□□□□ -0.91
PTPN9-205ENST00000568108 SBNO1A3KN83 1393 aa9.36□□□□□ -0.91
PTPN9-205ENST00000568108 KIF1AQ12756 1690 aa9.36□□□□□ -0.91
PTPN9-205ENST00000568108 ACIN1Q9UKV3 1341 aaKnown RBP9.35□□□□□ -0.91
PTPN9-205ENST00000568108 AMER1Q5JTC6 1135 aaPredicted RBP9.35□□□□□ -0.91
PTPN9-205ENST00000568108 TNS3Q68CZ2 1445 aa9.35□□□□□ -0.91
PTPN9-205ENST00000568108 KNDC1Q76NI1 1749 aa9.35□□□□□ -0.91
PTPN9-205ENST00000568108 KRT27Q7Z3Y8 459 aa9.35□□□□□ -0.91
PTPN9-205ENST00000568108 ARHGEF10O15013 1369 aa9.35□□□□□ -0.91
PTPN9-205ENST00000568108 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.34□□□□□ -0.91
PTPN9-205ENST00000568108 IFT172Q9UG01 1749 aa9.34□□□□□ -0.91
PTPN9-205ENST00000568108 A0A0G2JS52 829 aa9.34□□□□□ -0.91
PTPN9-205ENST00000568108 MYT1Q01538 1121 aa9.34□□□□□ -0.91
PTPN9-205ENST00000568108 USP32Q8NFA0 1604 aa9.34□□□□□ -0.91
PTPN9-205ENST00000568108 NRXN1Q9ULB1 1477 aa9.34□□□□□ -0.91
PTPN9-205ENST00000568108 RGPD8O14715 1765 aaPredicted RBP9.33□□□□□ -0.92
PTPN9-205ENST00000568108 HIRIP3Q9BW71 556 aaPredicted RBP9.33□□□□□ -0.92
PTPN9-205ENST00000568108 EP400Q96L91 3159 aa9.33□□□□□ -0.92
PTPN9-205ENST00000568108 FAM98CQ17RN3 349 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms