RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 LAPTM4BQ86VI4 370 aa9.73□□□□□ -0.85
VPS39-209ENST00000568029 RSPH6AQ9H0K4 717 aa9.73□□□□□ -0.85
VPS39-209ENST00000568029 ERICH3Q5RHP9 1530 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 BIVM-ERCC5R4GMW8 1640 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 POTEB3A0JP26 581 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 DIXDC1Q155Q3 683 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 SH3D19Q5HYK7 790 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 POTEBQ6S5H4 581 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 NLRP7Q8WX94 980 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 BEGAINQ9BUH8 593 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 AXIN2Q9Y2T1 843 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 ABCC2Q92887 1545 aa9.72□□□□□ -0.85
VPS39-209ENST00000568029 FAM98CQ17RN3 349 aaKnown RBP9.71□□□□□ -0.86
VPS39-209ENST00000568029 NBPF3Q9H094 633 aa9.71□□□□□ -0.86
VPS39-209ENST00000568029 KIF21BO75037 1637 aa9.71□□□□□ -0.86
VPS39-209ENST00000568029 MAP3K4Q9Y6R4 1608 aa9.71□□□□□ -0.86
VPS39-209ENST00000568029 BHMG1C9JSJ3 638 aaPredicted RBP9.7□□□□□ -0.86
VPS39-209ENST00000568029 CD46P15529 392 aa9.7□□□□□ -0.86
VPS39-209ENST00000568029 ILDR2Q71H61 639 aa9.7□□□□□ -0.86
VPS39-209ENST00000568029 GLI2P10070 1586 aa9.7□□□□□ -0.86
VPS39-209ENST00000568029 SMAPO00193 183 aa9.69□□□□□ -0.86
VPS39-209ENST00000568029 LSM11P83369 360 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS39-209ENST00000568029 TOP2BQ02880 1626 aa9.69□□□□□ -0.86
VPS39-209ENST00000568029 WRNQ14191 1432 aaPredicted RBP eCLIP9.68□□□□□ -0.86
VPS39-209ENST00000568029 ASXL2Q76L83 1435 aa9.68□□□□□ -0.86
VPS39-209ENST00000568029 SKIV2LQ15477 1246 aaKnown RBP9.67□□□□□ -0.86
VPS39-209ENST00000568029 RSPH4AQ5TD94 716 aa9.67□□□□□ -0.86
VPS39-209ENST00000568029 TTBK1Q5TCY1 1321 aaPredicted RBP9.66□□□□□ -0.86
VPS39-209ENST00000568029 HDGFP51858 240 aaKnown RBP9.66□□□□□ -0.86
VPS39-209ENST00000568029 PCMTD1Q96MG8 357 aaPredicted RBP9.66□□□□□ -0.86
VPS39-209ENST00000568029 SLC4A3P48751 1232 aa9.65□□□□□ -0.86
VPS39-209ENST00000568029 ADGRD1Q6QNK2 874 aa9.65□□□□□ -0.86
VPS39-209ENST00000568029 SEPT9Q9UHD8 586 aaPredicted RBP9.65□□□□□ -0.86
VPS39-209ENST00000568029 DDX11L8A8MPP1 907 aa9.64□□□□□ -0.87
VPS39-209ENST00000568029 HRO43593 1189 aa9.64□□□□□ -0.87
VPS39-209ENST00000568029 GJA5P36382 358 aa9.64□□□□□ -0.87
VPS39-209ENST00000568029 TBC1D2Q9BYX2 928 aa9.64□□□□□ -0.87
VPS39-209ENST00000568029 EPRSP07814 1512 aaKnown RBP9.63□□□□□ -0.87
VPS39-209ENST00000568029 TUSC1Q2TAM9 212 aa9.63□□□□□ -0.87
VPS39-209ENST00000568029 SWT1Q5T5J6 900 aaKnown RBP9.63□□□□□ -0.87
VPS39-209ENST00000568029 MYSM1Q5VVJ2 828 aa9.63□□□□□ -0.87
VPS39-209ENST00000568029 SLF2Q8IX21 1173 aa9.63□□□□□ -0.87
VPS39-209ENST00000568029 KRTAP3-3Q9BYR6 98 aa9.63□□□□□ -0.87
VPS39-209ENST00000568029 KRTAP3-2Q9BYR7 98 aa9.63□□□□□ -0.87
VPS39-209ENST00000568029 MRPL50Q8N5N7 158 aaKnown RBP9.62□□□□□ -0.87
VPS39-209ENST00000568029 NECTIN2Q92692 538 aa9.62□□□□□ -0.87
VPS39-209ENST00000568029 ZCCHC11Q5TAX3 1644 aaKnown RBP9.62□□□□□ -0.87
VPS39-209ENST00000568029 USP46P62068 366 aa9.61□□□□□ -0.87
VPS39-209ENST00000568029 SPIRE2Q8WWL2 714 aa9.61□□□□□ -0.87
VPS39-209ENST00000568029 ZFRQ96KR1 1074 aaKnown RBP9.61□□□□□ -0.87
VPS39-209ENST00000568029 PLB1Q6P1J6 1458 aa9.6□□□□□ -0.87
VPS39-209ENST00000568029 GCGRP47871 477 aa9.6□□□□□ -0.87
VPS39-209ENST00000568029 KIAA0586Q9BVV6 1533 aa9.6□□□□□ -0.87
VPS39-209ENST00000568029 CLK2P49760 499 aaKnown RBP9.59□□□□□ -0.87
VPS39-209ENST00000568029 SAMD7Q7Z3H4 446 aa9.59□□□□□ -0.87
VPS39-209ENST00000568029 NUTM1Q86Y26 1132 aa9.59□□□□□ -0.87
VPS39-209ENST00000568029 RDH13Q8NBN7 331 aa9.59□□□□□ -0.87
VPS39-209ENST00000568029 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS39-209ENST00000568029 PCF11O94913 1555 aaKnown RBP9.58□□□□□ -0.88
VPS39-209ENST00000568029 ADAMTSL3P82987 1691 aa9.58□□□□□ -0.88
VPS39-209ENST00000568029 PTPRGP23470 1445 aa9.58□□□□□ -0.88
VPS39-209ENST00000568029 SOCS7O14512 581 aa9.58□□□□□ -0.88
VPS39-209ENST00000568029 SPTLC1O15269 473 aa9.58□□□□□ -0.88
VPS39-209ENST00000568029 SLC10A3P09131 477 aa9.58□□□□□ -0.88
VPS39-209ENST00000568029 KDM4AO75164 1064 aa9.57□□□□□ -0.88
VPS39-209ENST00000568029 TIMELESSQ9UNS1 1208 aa9.57□□□□□ -0.88
VPS39-209ENST00000568029 DISP3Q9P2K9 1392 aa9.57□□□□□ -0.88
VPS39-209ENST00000568029 PTPRMP28827 1452 aa9.57□□□□□ -0.88
VPS39-209ENST00000568029 MADDQ8WXG6 1647 aa9.56□□□□□ -0.88
VPS39-209ENST00000568029 SPATA31D1Q6ZQQ2 1576 aa9.56□□□□□ -0.88
VPS39-209ENST00000568029 TEX14Q8IWB6 1497 aa9.56□□□□□ -0.88
VPS39-209ENST00000568029 FLIIQ13045 1269 aa9.55□□□□□ -0.88
VPS39-209ENST00000568029 RSBN1LQ6PCB5 846 aaPredicted RBP9.55□□□□□ -0.88
VPS39-209ENST00000568029 RIC3Q7Z5B4 369 aa9.55□□□□□ -0.88
VPS39-209ENST00000568029 LRCH3Q96II8 777 aa9.55□□□□□ -0.88
VPS39-209ENST00000568029 POLR3EQ9NVU0 708 aa9.55□□□□□ -0.88
VPS39-209ENST00000568029 UHRF1BP1LA0JNW5 1464 aa9.54□□□□□ -0.88
VPS39-209ENST00000568029 PPP2R2DQ66LE6 453 aa9.54□□□□□ -0.88
VPS39-209ENST00000568029 ANKRD13DQ6ZTN6 518 aa9.54□□□□□ -0.88
VPS39-209ENST00000568029 STAC3Q96MF2 364 aa9.54□□□□□ -0.88
VPS39-209ENST00000568029 KDM5BQ9UGL1 1544 aa9.54□□□□□ -0.88
VPS39-209ENST00000568029 DISP1Q96F81 1524 aa9.53□□□□□ -0.88
VPS39-209ENST00000568029 HOXA2O43364 376 aa9.53□□□□□ -0.88
VPS39-209ENST00000568029 C14orf37Q86TY3 774 aa9.53□□□□□ -0.88
VPS39-209ENST00000568029 PROCA1Q8NCQ7 364 aaPredicted RBP9.53□□□□□ -0.88
VPS39-209ENST00000568029 ANKK1Q8NFD2 765 aa9.53□□□□□ -0.88
VPS39-209ENST00000568029 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.53□□□□□ -0.88
VPS39-209ENST00000568029 TNIKQ9UKE5 1360 aa9.52□□□□□ -0.88
VPS39-209ENST00000568029 MOXD2PA6NHM9 499 aa9.52□□□□□ -0.89
VPS39-209ENST00000568029 GRIPAP1Q4V328 841 aa9.52□□□□□ -0.89
VPS39-209ENST00000568029 PRR14Q9BWN1 585 aa9.52□□□□□ -0.89
VPS39-209ENST00000568029 LIMD1Q9UGP4 676 aa9.52□□□□□ -0.89
VPS39-209ENST00000568029 RIMS1Q86UR5 1692 aaKnown RBP9.51□□□□□ -0.89
VPS39-209ENST00000568029 BCORL1Q5H9F3 1711 aa9.51□□□□□ -0.89
VPS39-209ENST00000568029 IQGAP2Q13576 1575 aa9.51□□□□□ -0.89
VPS39-209ENST00000568029 UACAQ9BZF9 1416 aa9.51□□□□□ -0.89
VPS39-209ENST00000568029 SOWAHBA6NEL2 793 aa9.51□□□□□ -0.89
VPS39-209ENST00000568029 GOLGA8CPA6NN73 597 aa9.51□□□□□ -0.89
VPS39-209ENST00000568029 CFHP08603 1231 aa9.51□□□□□ -0.89
VPS39-209ENST00000568029 KMT5BQ4FZB7 885 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms