RNA–Protein interactions for RNA: ENST00000566121.1

CMTM3-212, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-212ENST00000566121 CDC42BPGQ6DT37 1551 aa22.41■■□□□ 1.18
CMTM3-212ENST00000566121 YTHDC2Q9H6S0 1430 aaKnown RBP22.39■■□□□ 1.17
CMTM3-212ENST00000566121 PNPLA6Q8IY17 1366 aa22.38■■□□□ 1.17
CMTM3-212ENST00000566121 KNDC1Q76NI1 1749 aa22.37■■□□□ 1.17
CMTM3-212ENST00000566121 ORAI2Q96SN7 254 aa22.37■■□□□ 1.17
CMTM3-212ENST00000566121 MEX3CQ5U5Q3 659 aaKnown RBP22.36■■□□□ 1.17
CMTM3-212ENST00000566121 DHX57Q6P158 1386 aaKnown RBP22.36■■□□□ 1.17
CMTM3-212ENST00000566121 TMEM132EQ6IEE7 984 aa22.35■■□□□ 1.17
CMTM3-212ENST00000566121 NPHP3Q7Z494 1330 aa22.34■■□□□ 1.17
CMTM3-212ENST00000566121 WAPLQ7Z5K2 1190 aa22.34■■□□□ 1.17
CMTM3-212ENST00000566121 DDX17Q92841 729 aaKnown RBP22.32■■□□□ 1.16
CMTM3-212ENST00000566121 STK26Q9P289 416 aa22.32■■□□□ 1.16
CMTM3-212ENST00000566121 CDK12Q9NYV4 1490 aaPredicted RBP22.31■■□□□ 1.16
CMTM3-212ENST00000566121 CFAP70Q5T0N1 1121 aa22.31■■□□□ 1.16
CMTM3-212ENST00000566121 ESCO1Q5FWF5 840 aa22.3■■□□□ 1.16
CMTM3-212ENST00000566121 DLC1Q96QB1 1528 aa22.29■■□□□ 1.16
CMTM3-212ENST00000566121 PLEKHH1Q9ULM0 1364 aa22.28■■□□□ 1.16
CMTM3-212ENST00000566121 NUTM2BA6NNL0 878 aaPredicted RBP22.27■■□□□ 1.16
CMTM3-212ENST00000566121 NUTM2EB1AL46 878 aaPredicted RBP22.27■■□□□ 1.16
CMTM3-212ENST00000566121 RXRBP28702 533 aa22.27■■□□□ 1.16
CMTM3-212ENST00000566121 NUTM2AQ8IVF1 878 aaPredicted RBP22.27■■□□□ 1.16
CMTM3-212ENST00000566121 AFF2P51816 1311 aa22.27■■□□□ 1.16
CMTM3-212ENST00000566121 PXDNQ92626 1479 aa22.26■■□□□ 1.15
CMTM3-212ENST00000566121 COL22A1Q8NFW1 1626 aaPredicted RBP22.25■■□□□ 1.15
CMTM3-212ENST00000566121 FNBP4Q8N3X1 1017 aaPredicted RBP22.25■■□□□ 1.15
CMTM3-212ENST00000566121 ADGRB1O14514 1584 aa22.24■■□□□ 1.15
CMTM3-212ENST00000566121 FOXO3O43524 673 aa22.23■■□□□ 1.15
CMTM3-212ENST00000566121 FMN2Q9NZ56 1722 aa22.22■■□□□ 1.15
CMTM3-212ENST00000566121 RBM6P78332 1123 aaKnown RBP22.21■■□□□ 1.15
CMTM3-212ENST00000566121 PRAM1Q96QH2 718 aa22.21■■□□□ 1.15
CMTM3-212ENST00000566121 DCAF11Q8TEB1 546 aa22.2■■□□□ 1.14
CMTM3-212ENST00000566121 QTRT2Q9H974 415 aaKnown RBP22.2■■□□□ 1.14
CMTM3-212ENST00000566121 NGLY1Q96IV0 654 aa22.19■■□□□ 1.14
CMTM3-212ENST00000566121 C8orf37Q96NL8 207 aa22.19■■□□□ 1.14
CMTM3-212ENST00000566121 SPATA31A3Q5VYP0 1347 aa22.19■■□□□ 1.14
CMTM3-212ENST00000566121 ANKARQ7Z5J8 1434 aa22.19■■□□□ 1.14
CMTM3-212ENST00000566121 KIF1AQ12756 1690 aa22.19■■□□□ 1.14
CMTM3-212ENST00000566121 PHF8Q9UPP1 1060 aa22.17■■□□□ 1.14
CMTM3-212ENST00000566121 ADGRB2O60241 1585 aa22.16■■□□□ 1.14
CMTM3-212ENST00000566121 PSME1Q06323 249 aa22.16■■□□□ 1.14
CMTM3-212ENST00000566121 POGKQ9P215 609 aa22.16■■□□□ 1.14
CMTM3-212ENST00000566121 SBNO1A3KN83 1393 aa22.15■■□□□ 1.14
CMTM3-212ENST00000566121 EIF3AQ14152 1382 aaKnown RBP22.15■■□□□ 1.14
CMTM3-212ENST00000566121 ADAMTS2O95450 1211 aa22.14■■□□□ 1.13
CMTM3-212ENST00000566121 KRT28Q7Z3Y7 464 aa22.14■■□□□ 1.13
CMTM3-212ENST00000566121 TRPC5Q9UL62 973 aaPredicted RBP22.14■■□□□ 1.13
CMTM3-212ENST00000566121 KDM2AQ9Y2K7 1162 aa22.13■■□□□ 1.13
CMTM3-212ENST00000566121 NUTM2FA1L443 756 aa22.12■■□□□ 1.13
CMTM3-212ENST00000566121 UPF1Q92900 1129 aaKnown RBP eCLIP22.12■■□□□ 1.137e-10■■■■■ 28
CMTM3-212ENST00000566121 USP21Q9UK80 565 aa22.12■■□□□ 1.13
CMTM3-212ENST00000566121 TRAK1Q9UPV9 953 aa22.11■■□□□ 1.13
CMTM3-212ENST00000566121 ATRNO75882 1429 aa22.1■■□□□ 1.13
CMTM3-212ENST00000566121 WASLO00401 505 aaPredicted RBP22.09■■□□□ 1.13
CMTM3-212ENST00000566121 BCL9LQ86UU0 1499 aa22.09■■□□□ 1.13
CMTM3-212ENST00000566121 ARHGEF10O15013 1369 aa22.08■■□□□ 1.12
CMTM3-212ENST00000566121 TNS3Q68CZ2 1445 aa22.07■■□□□ 1.12
CMTM3-212ENST00000566121 XPCQ01831 940 aaPredicted RBP22.07■■□□□ 1.12
CMTM3-212ENST00000566121 KIAA1210Q9ULL0 1709 aa22.06■■□□□ 1.12
CMTM3-212ENST00000566121 SAFB2Q14151 953 aaKnown RBP eCLIP22.05■■□□□ 1.12
CMTM3-212ENST00000566121 SLIT2O94813 1529 aa22.05■■□□□ 1.12
CMTM3-212ENST00000566121 RGS12O14924 1447 aa22.05■■□□□ 1.12
CMTM3-212ENST00000566121 MARF1Q9Y4F3 1742 aaKnown RBP22.04■■□□□ 1.12
CMTM3-212ENST00000566121 USP32Q8NFA0 1604 aa22.04■■□□□ 1.12
CMTM3-212ENST00000566121 TULP4Q9NRJ4 1543 aa22.04■■□□□ 1.12
CMTM3-212ENST00000566121 RGPD8O14715 1765 aaPredicted RBP22.03■■□□□ 1.12
CMTM3-212ENST00000566121 UNC5CLQ8IV45 518 aa22.02■■□□□ 1.12
CMTM3-212ENST00000566121 PRR36Q9H6K5 1346 aa22.02■■□□□ 1.12
CMTM3-212ENST00000566121 MINK1Q8N4C8 1332 aaPredicted RBP22.01■■□□□ 1.11
CMTM3-212ENST00000566121 GJD4Q96KN9 370 aaPredicted RBP22■■□□□ 1.11
CMTM3-212ENST00000566121 TNKS1BP1Q9C0C2 1729 aaKnown RBP22■■□□□ 1.11
CMTM3-212ENST00000566121 GPRASP1Q5JY77 1395 aa21.99■■□□□ 1.11
CMTM3-212ENST00000566121 HIRIP3Q9BW71 556 aaPredicted RBP21.99■■□□□ 1.11
CMTM3-212ENST00000566121 PMFBP1Q8TBY8 1022 aa21.98■■□□□ 1.11
CMTM3-212ENST00000566121 ARHGEF28Q8N1W1 1705 aaKnown RBP21.97■■□□□ 1.11
CMTM3-212ENST00000566121 ONECUT3O60422 494 aaPredicted RBP21.96■■□□□ 1.11
CMTM3-212ENST00000566121 NUDT16Q96DE0 195 aaKnown RBP21.96■■□□□ 1.11
CMTM3-212ENST00000566121 ATAD2Q6PL18 1390 aa21.96■■□□□ 1.11
CMTM3-212ENST00000566121 PLEKHG3A1L390 1219 aa21.95■■□□□ 1.1
CMTM3-212ENST00000566121 CCDC61Q9Y6R9 512 aa21.95■■□□□ 1.1
CMTM3-212ENST00000566121 VPS72Q15906 364 aa21.94■■□□□ 1.1
CMTM3-212ENST00000566121 CCDC125Q86Z20 511 aa21.94■■□□□ 1.1
CMTM3-212ENST00000566121 ATP7BP35670 1465 aa21.94■■□□□ 1.1
CMTM3-212ENST00000566121 TRPM3Q9HCF6 1732 aaPredicted RBP21.94■■□□□ 1.1
CMTM3-212ENST00000566121 EP400Q96L91 3159 aa21.93■■□□□ 1.1
CMTM3-212ENST00000566121 POLR3AO14802 1390 aaPredicted RBP21.93■■□□□ 1.1
CMTM3-212ENST00000566121 NBPF1Q3BBV0 1214 aa21.93■■□□□ 1.1
CMTM3-212ENST00000566121 CDK19Q9BWU1 502 aa21.93■■□□□ 1.1
CMTM3-212ENST00000566121 NGDNQ8NEJ9 315 aaKnown RBP21.92■■□□□ 1.1
CMTM3-212ENST00000566121 L3MBTL2Q969R5 705 aa21.92■■□□□ 1.1
CMTM3-212ENST00000566121 NWD2Q9ULI1 1742 aa21.92■■□□□ 1.1
CMTM3-212ENST00000566121 ALS2Q96Q42 1657 aa21.91■■□□□ 1.1
CMTM3-212ENST00000566121 BRD4O60885 1362 aaPredicted RBP21.9■■□□□ 1.1
CMTM3-212ENST00000566121 FAM83GA6ND36 823 aa21.9■■□□□ 1.1
CMTM3-212ENST00000566121 HAP1P54257 671 aaPredicted RBP21.9■■□□□ 1.1
CMTM3-212ENST00000566121 CABLES1Q8TDN4 633 aa21.9■■□□□ 1.1
CMTM3-212ENST00000566121 RALGAPBQ86X10 1494 aa21.9■■□□□ 1.1
CMTM3-212ENST00000566121 ITSN1Q15811 1721 aa21.89■■□□□ 1.09
CMTM3-212ENST00000566121 CENPJQ9HC77 1338 aaPredicted RBP21.87■■□□□ 1.09
CMTM3-212ENST00000566121 NBPF8Q3BBV2 869 aa21.87■■□□□ 1.09
CMTM3-212ENST00000566121 LMOD2Q6P5Q4 547 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms