RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 USP47Q96K76 1375 aa17.79■□□□□ 0.44
SF3B3-206ENST00000565990 SBNO2Q9Y2G9 1366 aa17.79■□□□□ 0.44
SF3B3-206ENST00000565990 SLC24A1O60721 1099 aa17.78■□□□□ 0.44
SF3B3-206ENST00000565990 EIF4G2P78344 907 aaKnown RBP eCLIP17.78■□□□□ 0.44
SF3B3-206ENST00000565990 TESK2Q96S53 571 aa17.78■□□□□ 0.44
SF3B3-206ENST00000565990 ADGRL3Q9HAR2 1447 aa17.78■□□□□ 0.44
SF3B3-206ENST00000565990 NALCNQ8IZF0 1738 aa17.78■□□□□ 0.44
SF3B3-206ENST00000565990 QRICH2Q9H0J4 1663 aa17.77■□□□□ 0.44
SF3B3-206ENST00000565990 SAFB2Q14151 953 aaKnown RBP eCLIP17.76■□□□□ 0.43
SF3B3-206ENST00000565990 ADGRB2O60241 1585 aa17.75■□□□□ 0.43
SF3B3-206ENST00000565990 HSPA5P11021 654 aaKnown RBP17.75■□□□□ 0.43
SF3B3-206ENST00000565990 DCCP43146 1447 aa17.74■□□□□ 0.43
SF3B3-206ENST00000565990 MSH6P52701 1360 aa17.74■□□□□ 0.43
SF3B3-206ENST00000565990 MINK1Q8N4C8 1332 aaPredicted RBP17.73■□□□□ 0.43
SF3B3-206ENST00000565990 WASLO00401 505 aaPredicted RBP17.73■□□□□ 0.43
SF3B3-206ENST00000565990 C14orf37Q86TY3 774 aa17.73■□□□□ 0.43
SF3B3-206ENST00000565990 CADPS2Q86UW7 1296 aa17.73■□□□□ 0.43
SF3B3-206ENST00000565990 CDC42BPGQ6DT37 1551 aa17.72■□□□□ 0.43
SF3B3-206ENST00000565990 PUS7Q96PZ0 661 aaKnown RBP17.72■□□□□ 0.43
SF3B3-206ENST00000565990 ATF3P18847 181 aa17.71■□□□□ 0.43
SF3B3-206ENST00000565990 HIRIP3Q9BW71 556 aaPredicted RBP17.71■□□□□ 0.43
SF3B3-206ENST00000565990 CDK19Q9BWU1 502 aa17.71■□□□□ 0.43
SF3B3-206ENST00000565990 EVC2Q86UK5 1308 aa17.7■□□□□ 0.42
SF3B3-206ENST00000565990 FMN2Q9NZ56 1722 aa17.69■□□□□ 0.42
SF3B3-206ENST00000565990 SLAIN2Q9P270 581 aa17.69■□□□□ 0.42
SF3B3-206ENST00000565990 RGPD8O14715 1765 aaPredicted RBP17.68■□□□□ 0.42
SF3B3-206ENST00000565990 TULP4Q9NRJ4 1543 aa17.67■□□□□ 0.42
SF3B3-206ENST00000565990 MST1RQ04912 1400 aa17.67■□□□□ 0.42
SF3B3-206ENST00000565990 TOM1O60784 492 aa17.67■□□□□ 0.42
SF3B3-206ENST00000565990 TMF1P82094 1093 aa17.66■□□□□ 0.42
SF3B3-206ENST00000565990 USP32Q8NFA0 1604 aa17.65■□□□□ 0.42
SF3B3-206ENST00000565990 ANKARQ7Z5J8 1434 aa17.64■□□□□ 0.42
SF3B3-206ENST00000565990 C1orf167Q5SNV9 1468 aa17.64■□□□□ 0.41
SF3B3-206ENST00000565990 C11orf95C9JLR9 678 aaPredicted RBP17.64■□□□□ 0.41
SF3B3-206ENST00000565990 NUDT16Q96DE0 195 aaKnown RBP17.64■□□□□ 0.41
SF3B3-206ENST00000565990 CABP2Q9NPB3 220 aa17.64■□□□□ 0.41
SF3B3-206ENST00000565990 PRR36Q9H6K5 1346 aa17.64■□□□□ 0.41
SF3B3-206ENST00000565990 CDCA8Q53HL2 280 aa17.63■□□□□ 0.41
SF3B3-206ENST00000565990 CCDC61Q9Y6R9 512 aa17.63■□□□□ 0.41
SF3B3-206ENST00000565990 DISP3Q9P2K9 1392 aa17.63■□□□□ 0.41
SF3B3-206ENST00000565990 UBAP1LF5GYI3 381 aa17.62■□□□□ 0.41
SF3B3-206ENST00000565990 SRPK2P78362 688 aaKnown RBP17.62■□□□□ 0.41
SF3B3-206ENST00000565990 PLEKHG3A1L390 1219 aa17.61■□□□□ 0.41
SF3B3-206ENST00000565990 ORAI2Q96SN7 254 aa17.6■□□□□ 0.41
SF3B3-206ENST00000565990 ATP7BP35670 1465 aa17.6■□□□□ 0.41
SF3B3-206ENST00000565990 NUTM2FA1L443 756 aa17.59■□□□□ 0.41
SF3B3-206ENST00000565990 ITSN1Q15811 1721 aa17.58■□□□□ 0.41
SF3B3-206ENST00000565990 TOPAZ1Q8N9V7 1692 aa17.58■□□□□ 0.41
SF3B3-206ENST00000565990 ATAD2Q6PL18 1390 aa17.58■□□□□ 0.4
SF3B3-206ENST00000565990 BRINP3Q76B58 766 aa17.58■□□□□ 0.4
SF3B3-206ENST00000565990 ESCO1Q5FWF5 840 aa17.57■□□□□ 0.4
SF3B3-206ENST00000565990 PHF8Q9UPP1 1060 aa17.57■□□□□ 0.4
SF3B3-206ENST00000565990 CABP1Q9NZU7 370 aa17.56■□□□□ 0.4
SF3B3-206ENST00000565990 ROBO1Q9Y6N7 1651 aa17.55■□□□□ 0.4
SF3B3-206ENST00000565990 PPIP5K1Q6PFW1 1433 aa17.55■□□□□ 0.4
SF3B3-206ENST00000565990 KIF7Q2M1P5 1343 aa17.54■□□□□ 0.4
SF3B3-206ENST00000565990 SLC12A5Q9H2X9 1139 aa17.54■□□□□ 0.4
SF3B3-206ENST00000565990 KIF1AQ12756 1690 aa17.54■□□□□ 0.4
SF3B3-206ENST00000565990 POLR3AO14802 1390 aaPredicted RBP17.53■□□□□ 0.4
SF3B3-206ENST00000565990 NINLQ9Y2I6 1382 aa17.53■□□□□ 0.4
SF3B3-206ENST00000565990 WASHC2AQ641Q2 1341 aa17.52■□□□□ 0.4
SF3B3-206ENST00000565990 PIP4K2BP78356 416 aa17.52■□□□□ 0.4
SF3B3-206ENST00000565990 PMFBP1Q8TBY8 1022 aa17.52■□□□□ 0.4
SF3B3-206ENST00000565990 ZNF692Q9BU19 519 aaPredicted RBP17.52■□□□□ 0.4
SF3B3-206ENST00000565990 ACEP12821 1306 aa17.51■□□□□ 0.39
SF3B3-206ENST00000565990 FOXO3O43524 673 aa17.51■□□□□ 0.39
SF3B3-206ENST00000565990 CPSF1Q10570 1443 aaKnown RBP17.51■□□□□ 0.39
SF3B3-206ENST00000565990 FBXO41Q8TF61 875 aa17.51■□□□□ 0.39
SF3B3-206ENST00000565990 CCDC7Q96M83 1385 aa17.51■□□□□ 0.39
SF3B3-206ENST00000565990 NHSL1Q5SYE7 1610 aa17.5■□□□□ 0.39
SF3B3-206ENST00000565990 AKAP12Q02952 1782 aa17.5■□□□□ 0.39
SF3B3-206ENST00000565990 CD163L1Q9NR16 1453 aa17.5■□□□□ 0.39
SF3B3-206ENST00000565990 MYOM1P52179 1685 aa17.49■□□□□ 0.39
SF3B3-206ENST00000565990 TMC1Q8TDI8 760 aa17.49■□□□□ 0.39
SF3B3-206ENST00000565990 SOS2Q07890 1332 aaPredicted RBP17.48■□□□□ 0.39
SF3B3-206ENST00000565990 NPHP3Q7Z494 1330 aa17.48■□□□□ 0.39
SF3B3-206ENST00000565990 AHDC1Q5TGY3 1603 aaPredicted RBP17.48■□□□□ 0.39
SF3B3-206ENST00000565990 PSME1Q06323 249 aa17.48■□□□□ 0.39
SF3B3-206ENST00000565990 NGDNQ8NEJ9 315 aaKnown RBP17.48■□□□□ 0.39
SF3B3-206ENST00000565990 ZNF316A6NFI3 1004 aaPredicted RBP17.47■□□□□ 0.39
SF3B3-206ENST00000565990 KRT28Q7Z3Y7 464 aa17.47■□□□□ 0.39
SF3B3-206ENST00000565990 DDX17Q92841 729 aaKnown RBP17.47■□□□□ 0.39
SF3B3-206ENST00000565990 TERF2IPQ9NYB0 399 aa17.47■□□□□ 0.39
SF3B3-206ENST00000565990 SSH2Q76I76 1423 aa17.47■□□□□ 0.39
SF3B3-206ENST00000565990 PXDNQ92626 1479 aa17.46■□□□□ 0.39
SF3B3-206ENST00000565990 BRD4O60885 1362 aaPredicted RBP17.46■□□□□ 0.39
SF3B3-206ENST00000565990 ANKRD36BQ8N2N9 1353 aa17.45■□□□□ 0.38
SF3B3-206ENST00000565990 DIEXFQ68CQ4 756 aaKnown RBP17.45■□□□□ 0.38
SF3B3-206ENST00000565990 SCAF1Q9H7N4 1312 aaKnown RBP17.45■□□□□ 0.38
SF3B3-206ENST00000565990 PHLPP1O60346 1717 aa17.44■□□□□ 0.38
SF3B3-206ENST00000565990 MON2Q7Z3U7 1717 aa17.44■□□□□ 0.38
SF3B3-206ENST00000565990 HDGFL2Q7Z4V5 671 aaPredicted RBP17.44■□□□□ 0.38
SF3B3-206ENST00000565990 CARD14Q9BXL6 1004 aa17.44■□□□□ 0.38
SF3B3-206ENST00000565990 TRPM3Q9HCF6 1732 aaPredicted RBP17.44■□□□□ 0.38
SF3B3-206ENST00000565990 SBNO1A3KN83 1393 aa17.43■□□□□ 0.38
SF3B3-206ENST00000565990 POLR3GLQ9BT43 218 aa17.43■□□□□ 0.38
SF3B3-206ENST00000565990 PANK3Q9H999 370 aa17.43■□□□□ 0.38
SF3B3-206ENST00000565990 USP6P35125 1406 aa17.43■□□□□ 0.38
SF3B3-206ENST00000565990 A0A1W2PP64 1363 aa17.42■□□□□ 0.38
SF3B3-206ENST00000565990 KTN1Q86UP2 1357 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms