RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 NUTM2AQ8IVF1 878 aaPredicted RBP30.31■■■□□ 2.44
CLN3-219ENST00000565778 YTHDC2Q9H6S0 1430 aaKnown RBP30.3■■■□□ 2.44
CLN3-219ENST00000565778 TECPR2O15040 1411 aa30.3■■■□□ 2.44
CLN3-219ENST00000565778 POTEAQ6S8J7 498 aa30.29■■■□□ 2.44
CLN3-219ENST00000565778 MYOM2P54296 1465 aa30.29■■■□□ 2.44
CLN3-219ENST00000565778 ESCO1Q5FWF5 840 aa30.28■■■□□ 2.44
CLN3-219ENST00000565778 SIRT1Q96EB6 747 aa30.28■■■□□ 2.44
CLN3-219ENST00000565778 NRXN1Q9ULB1 1477 aa30.27■■■□□ 2.44
CLN3-219ENST00000565778 NUTM2FA1L443 756 aa30.27■■■□□ 2.44
CLN3-219ENST00000565778 PLEKHH1Q9ULM0 1364 aa30.27■■■□□ 2.44
CLN3-219ENST00000565778 STAC3Q96MF2 364 aa30.25■■■□□ 2.43
CLN3-219ENST00000565778 NHSL1Q5SYE7 1610 aa30.22■■■□□ 2.43
CLN3-219ENST00000565778 SHPRHQ149N8 1683 aa30.21■■■□□ 2.43
CLN3-219ENST00000565778 LRP6O75581 1613 aa30.21■■■□□ 2.43
CLN3-219ENST00000565778 SAFB2Q14151 953 aaKnown RBP eCLIP30.2■■■□□ 2.43
CLN3-219ENST00000565778 PRAM1Q96QH2 718 aa30.2■■■□□ 2.43
CLN3-219ENST00000565778 POGKQ9P215 609 aa30.2■■■□□ 2.43
CLN3-219ENST00000565778 SOS2Q07890 1332 aaPredicted RBP30.2■■■□□ 2.42
CLN3-219ENST00000565778 CDC42BPGQ6DT37 1551 aa30.18■■■□□ 2.42
CLN3-219ENST00000565778 FOXO3O43524 673 aa30.17■■■□□ 2.42
CLN3-219ENST00000565778 TRAK1Q9UPV9 953 aa30.17■■■□□ 2.42
CLN3-219ENST00000565778 KNDC1Q76NI1 1749 aa30.16■■■□□ 2.42
CLN3-219ENST00000565778 LAMC1P11047 1609 aa30.16■■■□□ 2.42
CLN3-219ENST00000565778 ZNF772Q68DY9 489 aaPredicted RBP30.16■■■□□ 2.42
CLN3-219ENST00000565778 NPHP3Q7Z494 1330 aa30.16■■■□□ 2.42
CLN3-219ENST00000565778 PNPLA6Q8IY17 1366 aa30.15■■■□□ 2.42
CLN3-219ENST00000565778 XPCQ01831 940 aaPredicted RBP30.12■■■□□ 2.41
CLN3-219ENST00000565778 C8orf37Q96NL8 207 aa30.09■■■□□ 2.41
CLN3-219ENST00000565778 ADAMTS2O95450 1211 aa30.08■■■□□ 2.41
CLN3-219ENST00000565778 AFF2P51816 1311 aa30.06■■■□□ 2.4
CLN3-219ENST00000565778 NGLY1Q96IV0 654 aa30.05■■■□□ 2.4
CLN3-219ENST00000565778 ADGRB1O14514 1584 aa30.05■■■□□ 2.4
CLN3-219ENST00000565778 HIRIP3Q9BW71 556 aaPredicted RBP30.04■■■□□ 2.4
CLN3-219ENST00000565778 PHF8Q9UPP1 1060 aa30.04■■■□□ 2.4
CLN3-219ENST00000565778 DLC1Q96QB1 1528 aa30.04■■■□□ 2.4
CLN3-219ENST00000565778 MINK1Q8N4C8 1332 aaPredicted RBP30.03■■■□□ 2.4
CLN3-219ENST00000565778 KRT28Q7Z3Y7 464 aa30.03■■■□□ 2.4
CLN3-219ENST00000565778 RXRBP28702 533 aa30.01■■■□□ 2.39
CLN3-219ENST00000565778 FMN2Q9NZ56 1722 aa30.01■■■□□ 2.39
CLN3-219ENST00000565778 PXDNQ92626 1479 aa29.99■■■□□ 2.39
CLN3-219ENST00000565778 PSME1Q06323 249 aa29.98■■■□□ 2.39
CLN3-219ENST00000565778 QTRT2Q9H974 415 aaKnown RBP29.98■■■□□ 2.39
CLN3-219ENST00000565778 PMFBP1Q8TBY8 1022 aa29.96■■■□□ 2.39
CLN3-219ENST00000565778 SIN3AQ96ST3 1273 aa29.96■■■□□ 2.39
CLN3-219ENST00000565778 NEUROD1Q13562 356 aa29.95■■■□□ 2.39
CLN3-219ENST00000565778 WASLO00401 505 aaPredicted RBP29.94■■■□□ 2.38
CLN3-219ENST00000565778 SPATA31A3Q5VYP0 1347 aa29.94■■■□□ 2.38
CLN3-219ENST00000565778 NBPF1Q3BBV0 1214 aa29.92■■■□□ 2.38
CLN3-219ENST00000565778 L3MBTL2Q969R5 705 aa29.91■■■□□ 2.38
CLN3-219ENST00000565778 USP21Q9UK80 565 aa29.91■■■□□ 2.38
CLN3-219ENST00000565778 ANKARQ7Z5J8 1434 aa29.9■■■□□ 2.38
CLN3-219ENST00000565778 LMOD2Q6P5Q4 547 aa29.9■■■□□ 2.38
CLN3-219ENST00000565778 KIF1AQ12756 1690 aa29.9■■■□□ 2.38
CLN3-219ENST00000565778 RGPD8O14715 1765 aaPredicted RBP29.9■■■□□ 2.38
CLN3-219ENST00000565778 EIF3AQ14152 1382 aaKnown RBP29.89■■■□□ 2.37
CLN3-219ENST00000565778 COL22A1Q8NFW1 1626 aaPredicted RBP29.87■■■□□ 2.37
CLN3-219ENST00000565778 PLEKHG5O94827 1062 aa29.87■■■□□ 2.37
CLN3-219ENST00000565778 RBM6P78332 1123 aaKnown RBP29.87■■■□□ 2.37
CLN3-219ENST00000565778 FNBP4Q8N3X1 1017 aaPredicted RBP29.87■■■□□ 2.37
CLN3-219ENST00000565778 PRR36Q9H6K5 1346 aa29.86■■■□□ 2.37
CLN3-219ENST00000565778 ADGRB2O60241 1585 aa29.86■■■□□ 2.37
CLN3-219ENST00000565778 HAP1P54257 671 aaPredicted RBP29.85■■■□□ 2.37
CLN3-219ENST00000565778 NGDNQ8NEJ9 315 aaKnown RBP29.83■■■□□ 2.37
CLN3-219ENST00000565778 CDK19Q9BWU1 502 aa29.83■■■□□ 2.37
CLN3-219ENST00000565778 TRPC5Q9UL62 973 aaPredicted RBP29.83■■■□□ 2.37
CLN3-219ENST00000565778 SBNO1A3KN83 1393 aa29.82■■■□□ 2.36
CLN3-219ENST00000565778 TRIM26Q12899 539 aaPredicted RBP29.82■■■□□ 2.36
CLN3-219ENST00000565778 NUDT16Q96DE0 195 aaKnown RBP29.82■■■□□ 2.36
CLN3-219ENST00000565778 GPRASP1Q5JY77 1395 aa29.81■■■□□ 2.36
CLN3-219ENST00000565778 CABLES1Q8TDN4 633 aa29.81■■■□□ 2.36
CLN3-219ENST00000565778 TNS3Q68CZ2 1445 aa29.8■■■□□ 2.36
CLN3-219ENST00000565778 USP32Q8NFA0 1604 aa29.8■■■□□ 2.36
CLN3-219ENST00000565778 KIAA1210Q9ULL0 1709 aa29.79■■■□□ 2.36
CLN3-219ENST00000565778 TULP4Q9NRJ4 1543 aa29.79■■■□□ 2.36
CLN3-219ENST00000565778 ARHGEF28Q8N1W1 1705 aaKnown RBP29.78■■■□□ 2.36
CLN3-219ENST00000565778 ARHGEF10O15013 1369 aa29.77■■■□□ 2.36
CLN3-219ENST00000565778 CDK12Q9NYV4 1490 aaPredicted RBP29.76■■■□□ 2.35
CLN3-219ENST00000565778 PAK3O75914 559 aaPredicted RBP29.75■■■□□ 2.35
CLN3-219ENST00000565778 CENPJQ9HC77 1338 aaPredicted RBP29.73■■■□□ 2.35
CLN3-219ENST00000565778 CCDC61Q9Y6R9 512 aa29.72■■■□□ 2.35
CLN3-219ENST00000565778 UPF1Q92900 1129 aaKnown RBP eCLIP29.71■■■□□ 2.35
CLN3-219ENST00000565778 BCL9LQ86UU0 1499 aa29.7■■■□□ 2.35
CLN3-219ENST00000565778 SRPK2P78362 688 aaKnown RBP29.7■■■□□ 2.35
CLN3-219ENST00000565778 UNC5CLQ8IV45 518 aa29.7■■■□□ 2.35
CLN3-219ENST00000565778 ATRNO75882 1429 aa29.69■■■□□ 2.34
CLN3-219ENST00000565778 GJD4Q96KN9 370 aaPredicted RBP29.68■■■□□ 2.34
CLN3-219ENST00000565778 RGS12O14924 1447 aa29.68■■■□□ 2.34
CLN3-219ENST00000565778 ATP7BP35670 1465 aa29.67■■■□□ 2.34
CLN3-219ENST00000565778 MARF1Q9Y4F3 1742 aaKnown RBP29.66■■■□□ 2.34
CLN3-219ENST00000565778 NBPF8Q3BBV2 869 aa29.65■■■□□ 2.34
CLN3-219ENST00000565778 ACEP12821 1306 aa29.65■■■□□ 2.34
CLN3-219ENST00000565778 ROCK2O75116 1388 aaKnown RBP29.64■■■□□ 2.34
CLN3-219ENST00000565778 PLEKHG3A1L390 1219 aa29.64■■■□□ 2.34
CLN3-219ENST00000565778 FAM83GA6ND36 823 aa29.64■■■□□ 2.34
CLN3-219ENST00000565778 CABP2Q9NPB3 220 aa29.64■■■□□ 2.34
CLN3-219ENST00000565778 SLIT2O94813 1529 aa29.62■■■□□ 2.33
CLN3-219ENST00000565778 TRPM3Q9HCF6 1732 aaPredicted RBP29.59■■■□□ 2.33
CLN3-219ENST00000565778 CCDC9Q9Y3X0 531 aaKnown RBP29.59■■■□□ 2.33
CLN3-219ENST00000565778 POLR3AO14802 1390 aaPredicted RBP29.58■■■□□ 2.33
CLN3-219ENST00000565778 ITSN1Q15811 1721 aa29.58■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms