RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-209ENST00000565511 PLEKHH1Q9ULM0 1364 aa35.28■■■■□ 3.24
RAB40C-209ENST00000565511 NRXN1Q9ULB1 1477 aa35.27■■■■□ 3.24
RAB40C-209ENST00000565511 WAPLQ7Z5K2 1190 aa35.26■■■■□ 3.24
RAB40C-209ENST00000565511 LRRC59Q96AG4 307 aaKnown RBP35.24■■■■□ 3.23
RAB40C-209ENST00000565511 MYOM2P54296 1465 aa35.22■■■■□ 3.23
RAB40C-209ENST00000565511 ABCC11Q96J66 1382 aa35.22■■■■□ 3.23
RAB40C-209ENST00000565511 YTHDC2Q9H6S0 1430 aaKnown RBP35.22■■■■□ 3.23
RAB40C-209ENST00000565511 SOS2Q07890 1332 aaPredicted RBP35.2■■■■□ 3.23
RAB40C-209ENST00000565511 ACIN1Q9UKV3 1341 aaKnown RBP35.19■■■■□ 3.22
RAB40C-209ENST00000565511 FMN2Q9NZ56 1722 aa35.18■■■■□ 3.22
RAB40C-209ENST00000565511 ZNF772Q68DY9 489 aaPredicted RBP35.16■■■■□ 3.22
RAB40C-209ENST00000565511 AFF2P51816 1311 aa35.15■■■■□ 3.22
RAB40C-209ENST00000565511 C14orf93Q9H972 538 aaKnown RBP35.15■■■■□ 3.22
RAB40C-209ENST00000565511 CFAP70Q5T0N1 1121 aa35.14■■■■□ 3.22
RAB40C-209ENST00000565511 PXDNQ92626 1479 aa35.13■■■■□ 3.21
RAB40C-209ENST00000565511 NUTM2FA1L443 756 aa35.12■■■■□ 3.21
RAB40C-209ENST00000565511 COL22A1Q8NFW1 1626 aaPredicted RBP35.11■■■■□ 3.21
RAB40C-209ENST00000565511 ESCO1Q5FWF5 840 aa35.1■■■■□ 3.21
RAB40C-209ENST00000565511 C8orf37Q96NL8 207 aa35.08■■■■□ 3.21
RAB40C-209ENST00000565511 RGPD8O14715 1765 aaPredicted RBP35.08■■■■□ 3.21
RAB40C-209ENST00000565511 XPCQ01831 940 aaPredicted RBP35.06■■■■□ 3.2
RAB40C-209ENST00000565511 ADGRB1O14514 1584 aa35.05■■■■□ 3.2
RAB40C-209ENST00000565511 ADAMTS2O95450 1211 aa35.04■■■■□ 3.2
RAB40C-209ENST00000565511 NPHP3Q7Z494 1330 aa35.02■■■■□ 3.2
RAB40C-209ENST00000565511 FOXO3O43524 673 aa35.01■■■■□ 3.2
RAB40C-209ENST00000565511 DHX57Q6P158 1386 aaKnown RBP35■■■■□ 3.19
RAB40C-209ENST00000565511 RXRBP28702 533 aa35■■■■□ 3.19
RAB40C-209ENST00000565511 SIRT1Q96EB6 747 aa35■■■■□ 3.19
RAB40C-209ENST00000565511 KIF1AQ12756 1690 aa35■■■■□ 3.19
RAB40C-209ENST00000565511 DLC1Q96QB1 1528 aa34.99■■■■□ 3.19
RAB40C-209ENST00000565511 CDK12Q9NYV4 1490 aaPredicted RBP34.98■■■■□ 3.19
RAB40C-209ENST00000565511 SAFB2Q14151 953 aaKnown RBP eCLIP34.96■■■■□ 3.19
RAB40C-209ENST00000565511 PRAM1Q96QH2 718 aa34.96■■■■□ 3.19
RAB40C-209ENST00000565511 MARF1Q9Y4F3 1742 aaKnown RBP34.95■■■■□ 3.19
RAB40C-209ENST00000565511 RGS12O14924 1447 aa34.95■■■■□ 3.19
RAB40C-209ENST00000565511 USP32Q8NFA0 1604 aa34.95■■■■□ 3.18
RAB40C-209ENST00000565511 HRCP23327 699 aa34.94■■■■□ 3.18
RAB40C-209ENST00000565511 NGLY1Q96IV0 654 aa34.93■■■■□ 3.18
RAB40C-209ENST00000565511 KDM2AQ9Y2K7 1162 aa34.93■■■■□ 3.18
RAB40C-209ENST00000565511 QTRT2Q9H974 415 aaKnown RBP34.92■■■■□ 3.18
RAB40C-209ENST00000565511 ADGRB2O60241 1585 aa34.91■■■■□ 3.18
RAB40C-209ENST00000565511 DCAF11Q8TEB1 546 aa34.9■■■■□ 3.18
RAB40C-209ENST00000565511 UPF1Q92900 1129 aaKnown RBP eCLIP34.87■■■■□ 3.17
RAB40C-209ENST00000565511 RBM6P78332 1123 aaKnown RBP34.85■■■■□ 3.17
RAB40C-209ENST00000565511 TRAK1Q9UPV9 953 aa34.85■■■■□ 3.17
RAB40C-209ENST00000565511 SPATA31A3Q5VYP0 1347 aa34.84■■■■□ 3.17
RAB40C-209ENST00000565511 FNBP4Q8N3X1 1017 aaPredicted RBP34.83■■■■□ 3.17
RAB40C-209ENST00000565511 USP21Q9UK80 565 aa34.83■■■■□ 3.17
RAB40C-209ENST00000565511 PHF8Q9UPP1 1060 aa34.83■■■■□ 3.17
RAB40C-209ENST00000565511 ATRNO75882 1429 aa34.82■■■■□ 3.17
RAB40C-209ENST00000565511 ARHGEF28Q8N1W1 1705 aaKnown RBP34.82■■■■□ 3.16
RAB40C-209ENST00000565511 POGKQ9P215 609 aa34.82■■■■□ 3.16
RAB40C-209ENST00000565511 KRT28Q7Z3Y7 464 aa34.81■■■■□ 3.16
RAB40C-209ENST00000565511 BCL9LQ86UU0 1499 aa34.8■■■■□ 3.16
RAB40C-209ENST00000565511 ABCA3Q99758 1704 aa34.79■■■■□ 3.16
RAB40C-209ENST00000565511 HIRIP3Q9BW71 556 aaPredicted RBP34.79■■■■□ 3.16
RAB40C-209ENST00000565511 TNS3Q68CZ2 1445 aa34.78■■■■□ 3.16
RAB40C-209ENST00000565511 ANKARQ7Z5J8 1434 aa34.78■■■■□ 3.16
RAB40C-209ENST00000565511 MINK1Q8N4C8 1332 aaPredicted RBP34.77■■■■□ 3.16
RAB40C-209ENST00000565511 PRR36Q9H6K5 1346 aa34.76■■■■□ 3.15
RAB40C-209ENST00000565511 TRPM3Q9HCF6 1732 aaPredicted RBP34.75■■■■□ 3.15
RAB40C-209ENST00000565511 TRPC5Q9UL62 973 aaPredicted RBP34.74■■■■□ 3.15
RAB40C-209ENST00000565511 TNKS1BP1Q9C0C2 1729 aaKnown RBP34.73■■■■□ 3.15
RAB40C-209ENST00000565511 TULP4Q9NRJ4 1543 aa34.72■■■■□ 3.15
RAB40C-209ENST00000565511 PMFBP1Q8TBY8 1022 aa34.72■■■■□ 3.15
RAB40C-209ENST00000565511 SBNO1A3KN83 1393 aa34.7■■■■□ 3.15
RAB40C-209ENST00000565511 SLIT2O94813 1529 aa34.7■■■■□ 3.14
RAB40C-209ENST00000565511 CABLES1Q8TDN4 633 aa34.69■■■■□ 3.14
RAB40C-209ENST00000565511 STAC3Q96MF2 364 aa34.69■■■■□ 3.14
RAB40C-209ENST00000565511 KIAA1210Q9ULL0 1709 aa34.67■■■■□ 3.14
RAB40C-209ENST00000565511 PLEKHG5O94827 1062 aa34.66■■■■□ 3.14
RAB40C-209ENST00000565511 ALS2Q96Q42 1657 aa34.66■■■■□ 3.14
RAB40C-209ENST00000565511 PLCH1Q4KWH8 1693 aa34.65■■■■□ 3.14
RAB40C-209ENST00000565511 GLI3P10071 1580 aa34.65■■■■□ 3.14
RAB40C-209ENST00000565511 WASLO00401 505 aaPredicted RBP34.64■■■■□ 3.14
RAB40C-209ENST00000565511 PSME1Q06323 249 aa34.63■■■■□ 3.13
RAB40C-209ENST00000565511 ATP7BP35670 1465 aa34.61■■■■□ 3.13
RAB40C-209ENST00000565511 LMOD2Q6P5Q4 547 aa34.59■■■■□ 3.13
RAB40C-209ENST00000565511 ARHGEF10O15013 1369 aa34.59■■■■□ 3.13
RAB40C-209ENST00000565511 EIF3AQ14152 1382 aaKnown RBP34.59■■■■□ 3.13
RAB40C-209ENST00000565511 RALGAPBQ86X10 1494 aa34.58■■■■□ 3.13
RAB40C-209ENST00000565511 CRYBG1Q9Y4K1 1723 aa34.58■■■■□ 3.13
RAB40C-209ENST00000565511 ITSN1Q15811 1721 aa34.58■■■■□ 3.13
RAB40C-209ENST00000565511 NBPF1Q3BBV0 1214 aa34.57■■■■□ 3.12
RAB40C-209ENST00000565511 UNC5CLQ8IV45 518 aa34.57■■■■□ 3.12
RAB40C-209ENST00000565511 NWD2Q9ULI1 1742 aa34.56■■■■□ 3.12
RAB40C-209ENST00000565511 GJD4Q96KN9 370 aaPredicted RBP34.56■■■■□ 3.12
RAB40C-209ENST00000565511 TOPAZ1Q8N9V7 1692 aa34.56■■■■□ 3.12
RAB40C-209ENST00000565511 ATAD2Q6PL18 1390 aa34.54■■■■□ 3.12
RAB40C-209ENST00000565511 HAP1P54257 671 aaPredicted RBP34.52■■■■□ 3.12
RAB40C-209ENST00000565511 BRWD3Q6RI45 1802 aa34.52■■■■□ 3.12
RAB40C-209ENST00000565511 NRAPQ86VF7 1730 aa34.52■■■■□ 3.12
RAB40C-209ENST00000565511 GPRASP1Q5JY77 1395 aa34.5■■■■□ 3.11
RAB40C-209ENST00000565511 EP400Q96L91 3159 aa34.5■■■■□ 3.11
RAB40C-209ENST00000565511 NUDT16Q96DE0 195 aaKnown RBP34.49■■■■□ 3.11
RAB40C-209ENST00000565511 FAM83GA6ND36 823 aa34.46■■■■□ 3.11
RAB40C-209ENST00000565511 NGDNQ8NEJ9 315 aaKnown RBP34.46■■■■□ 3.11
RAB40C-209ENST00000565511 CDK19Q9BWU1 502 aa34.46■■■■□ 3.11
RAB40C-209ENST00000565511 SIN3AQ96ST3 1273 aa34.43■■■■□ 3.1
RAB40C-209ENST00000565511 COL14A1Q05707 1796 aaKnown RBP34.42■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 197 ms